Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physeter_20catodon_20[refseq_20GCF_5F000472045.1_202013-09-30] 11,711 sequences; 2,280,727,784 total letters Query= NC_004828.1 Length=4694 Score E Sequences producing significant alignments: (Bits) Value seq11495 219 1e-53 >seq11495 Length=911852 Score = 219 bits (242), Expect = 1e-53 Identities = 252/338 (75%), Gaps = 1/338 (0%) Strand=Plus/Plus Query 1244 GACATGCGACCACCGGCAAGACCAACATCGCGGAGGCTATTGCCCATGCTGTGCCGTTCT 1303 ||| |||||||||| ||||||| ||||||| ||||||||||||||||||||||| || | Sbjct 676179 GACCTGCGACCACCAGCAAGACAAACATCGTGGAGGCTATTGCCCATGCTGTGCTATTTT 676238 Query 1304 ATGGATGCGTTAACTGGACCAACGAGAACTTTCCGTTCAACGACTGCGTCGAAAAAATGA 1363 |||| || | |||||||| || ||||||||||| |||| ||||| || || || ||| Sbjct 676239 ATGGCTGTGGAAACTGGACTAATGAGAACTTTCCTTTCAGTGACTGGGTAGATAAGATGG 676298 Query 1364 TTATCTGGTGGGAGGAGGGCAAAATGACCGCCAAAGTGGTGGAAACAGCCAAGGCGATTC 1423 || ||||||||||| || || | ||| ||| | || || | || || || ||| Sbjct 676299 CGATTTGGTGGGAGGAAGGAAAGACGACTAGTAAAATCGTAGAGTCTGCTAAAGCCATTT 676358 Query 1424 TGGGAGGATCTCGGGTG-AGAGTGGACCAAAAATGCAAAGCTTCGGTTCCGATCGAACCG 1482 |||| || || ||| | || || |||||||| |||| ||| || | || ||||| Sbjct 676359 TGGGTGGGTCGGCCGTGCGGGGTTGATCAAAAATGTAAAGGTTCTGTGCAAATTGAACCA 676418 Query 1483 ACGCCGGTCATTATTACCAGTAACACCAACATGTGTTATGTCATCGACGGGAACACGACC 1542 ||||| || ||||||||||||| | | | |||| ||| | || ||||||| || Sbjct 676419 ACGCCTGTACTTATTACCAGTAATATATATAAGTGTACTGTGGTTGATGGGAACAGCACT 676478 Query 1543 ACGTTCGAGCATAAGCAGCCGTTGGAGGACAGGATGTT 1580 || || || |||||| |||| |||||||| || ||||| Sbjct 676479 ACCTTGGAACATAAGGAGCCTTTGGAGGAAAGAATGTT 676516 Score = 104 bits (114), Expect = 7e-19 Identities = 305/468 (65%), Gaps = 10/468 (2%) Strand=Plus/Plus Query 2937 TCCTCCGGAAATTGGCATTGCGATTCCCAATGGCTGGAAAACGGAGTCGTCACTCGAACC 2996 ||||| |||||||||||| | |||| ||||||| | || ||| |||| | || Sbjct 677821 TCCTCAGGAAATTGGCAT-GTGATTGTCAATGGCAAGGGAATCTCGTCACCACTTGTTCC 677879 Query 2997 ACCCGAACCTGGGTCTTGCCCAGCTACAACAACCACCTGTACAAACGAATCCAAGGACCC 3056 ||| |||| ||||| | ||| ||| ||||| | || ||||| | || |||| || Sbjct 677880 ACCAGAACTTGGGTGCTCCCCTCCTATGACAACAATCTCTACAAGCAGATTAAAGG--CC 677937 Query 3057 AGCGGAGGCNNNNNNNNNNNNNNATTCTTTGGATTCAGCACCCCCTGGGGATACTTTGAC 3116 | | | | ||| || | ||||||||| |||| ||| | || Sbjct 677938 AT----GCCTCCGACATGTCCGCCTACTTGGGTTACAGCACCCC-TGGGCCTACCTCAAC 677992 Query 3117 TACAATCGATTCCACTGCCACTTTTCCCCGCGAGACTGGCAACGACTCATCAACAACAAC 3176 | ||| ||||||| ||||||| || |||||||| || || |||||||||||| || Sbjct 677993 TTCAAGAGATTCCAGTGCCACTGGAGTCCCCGAGACTGTCAGCGGCTCATCAACAACTAC 678052 Query 3177 TGGGGCATCCGTCCCAAAGCGATGCGCTTTAGACTCTTTAACATCCAGGTTAAAGAGGTC 3236 ||||||||||| || ||||| | | | | | || ||||| || ||||| |||||| Sbjct 678053 TGGGGCATCCGACCAAAAGCTTGTAGAATCAAAATTTTCAACATACAAGTTAAGGAGGTC 678112 Query 3237 ACGGTCCAAGACTTCAACACCACCATCGGCAACAACCTCACCAGTACGGTCCAGGTCTTT 3296 | || || || | || || | ||| ||||| || || ||||| | ||| Sbjct 678113 ATGGAGGCAGCGGGCATAAAGACAATTGCCAATAACCTAACGTCAACCATCCAGATTTTT 678172 Query 3297 GCGGACAAGGACTACCAACTGCCGTACGTCCTCGGATCGGCTACCGAAGGCACCT-TCCC 3355 || || | ||||| ||||| || || | ||| || ||||| || || ||| Sbjct 678173 GCAGATGACACATACCAGCTGCCATATGTGATTGGAAATGCCACCGAGGGGTGCTCACCC 678232 Query 3356 GCCGTTCCCAGCGGATATCTACACGATCCCGCAGTACGGGTACTGCAC 3403 || ||||| | ||| | | | | | || |||||| ||| |||||| Sbjct 678233 GCTTTTCCC-GGTGATGTTTTTATGCTGCCTCAGTACTGGTGCTGCAC 678279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14906890345785