Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physeter_20catodon_20[refseq_20GCF_5F000472045.1_202013-09-30] 11,711 sequences; 2,280,727,784 total letters Query= NC_005889.1 Length=4693 Score E Sequences producing significant alignments: (Bits) Value seq11495 165 2e-37 >seq11495 Length=911852 Score = 165 bits (182), Expect = 2e-37 Identities = 246/354 (69%), Gaps = 1/354 (0%) Strand=Plus/Plus Query 1341 CCGTCTGGCTGTATGGACCCGCGACCACCGGAAAGACCAACATCGCGGAAGCCATCTCTC 1400 || ||||| | || |||| ||||||||| | ||||| ||||||| ||| || || | | Sbjct 676164 CCATCTGGTTCTACAGACCTGCGACCACCAGCAAGACAAACATCGTGGAGGCTATTGCCC 676223 Query 1401 ACACCGTGCCCTTTTATGGCTGTGTGAACTGGACTAATGAGAACTTNNNNNNNNNNNNNN 1460 | | |||| ||||||||||||| |||||||||||||||||||| Sbjct 676224 ATGCTGTGCTATTTTATGGCTGTGGAAACTGGACTAATGAGAACTTTCCTTTCAGTGACT 676283 Query 1461 NNNNNGAAAAAATGTTGATCTGGTGGGAGGAGGGAAAGATGACCAGCAAGGTGGTGGAAC 1520 || || ||| ||| ||||||||||| ||||||| ||| || || | || || Sbjct 676284 GGGTAGATAAGATGGCGATTTGGTGGGAGGAAGGAAAGACGACTAGTAAAATCGTAGAGT 676343 Query 1521 CCGCCAAGGCCATCTTgggggggTCTAGAGTACGAG-TGGATCAAAAATGTAAATCCTCT 1579 | || || ||||| ||||| ||||| || || | | ||||||||||||||| ||| Sbjct 676344 CTGCTAAAGCCATTTTGGGTGGGTCGGCCGTGCGGGGTTGATCAAAAATGTAAAGGTTCT 676403 Query 1580 GTACAAGTAGACTCTACCCCGGTGATTATCACCTCCAATACTAACATGTGTGTGGTGGTG 1639 || ||| | || | || || || |||| ||| |||| | | |||| ||||| Sbjct 676404 GTGCAAATTGAACCAACGCCTGTACTTATTACCAGTAATATATATAAGTGTACTGTGGTT 676463 Query 1640 GATGGGAACTCCACGACCTTTGAACACCAGCAGCCGCTGGAAGACCGCATGTTC 1693 ||||||||| ||| ||||| ||||| || |||| |||| || | |||||| Sbjct 676464 GATGGGAACAGCACTACCTTGGAACATAAGGAGCCTTTGGAGGAAAGAATGTTC 676517 Score = 122 bits (134), Expect = 3e-24 Identities = 217/308 (70%), Gaps = 8/308 (3%) Strand=Plus/Plus Query 3025 CCCCTGGGGATACTTTGACTTTAACCGCTTCCACTGCCACTTCTCGCCAAGAGACTGGCA 3084 |||||||| ||| | |||| || | ||||| ||||||| || ||||||| || Sbjct 677974 CCCCTGGGCCTACCTCAACTTCAAGAGATTCCAGTGCCACTGGAGTCCCCGAGACTGTCA 678033 Query 3085 AAGGCTCATCAACAACCACTGGGGACTGCGCCCCAAAAGCATGCA-AGTCCGCATCTTCA 3143 |||||||||||||| ||||||| | || |||||||| || | | || || |||| Sbjct 678034 GCGGCTCATCAACAACTACTGGGGCATCCG-ACCAAAAGCTTGTAGAATCAAAATTTTCA 678092 Query 3144 ACATCCAAGTTAAGGAGGTCACGACGTCTAACGGGGA-GACGACCGTATCCAACAACCTC 3202 |||| |||||||||||||||| | | | | |||| | | ||| | |||| ||||| Sbjct 678093 ACATACAAGTTAAGGAGGTCATGGAGGC-AGCGGGCATAAAGACAATTGCCAATAACCTA 678151 Query 3203 ACCAGCACGGTCCAGATCTTTGCGGACAGCACGTACGAGCTCCCGTACGTGA-TGGATGC 3261 || || ||||||| ||||| || ||| ||| |||| || || |||| |||| Sbjct 678152 ACGTCAACCATCCAGATTTTTGCAGATGACACATACCAGCTGCCATATGTGATTGGA--A 678209 Query 3262 AGGTCA-GGAGGGCAGCTTGCCTCCTTTCCCCAACGACGTGTTCATGGTGCCTCAGTACG 3320 | | || ||||| ||| || |||| ||| || || || ||| ||||||||||| Sbjct 678210 ATGCCACCGAGGGGTGCTCACCCGCTTTTCCCGGTGATGTTTTTATGCTGCCTCAGTACT 678269 Query 3321 GGTACTGC 3328 ||| |||| Sbjct 678270 GGTGCTGC 678277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14903690755670