Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physeter_20catodon_20[refseq_20GCF_5F000472045.1_202013-09-30] 11,711 sequences; 2,280,727,784 total letters Query= NC_006147.2 Length=5132 Score E Sequences producing significant alignments: (Bits) Value seq11495 293 8e-76 >seq11495 Length=911852 Score = 293 bits (324), Expect = 8e-76 Identities = 290/374 (78%), Gaps = 1/374 (0%) Strand=Plus/Plus Query 1520 GAATTCAACAAAAGAAATGCCATATGGCTCTACGGACCTGCGACCACCGGAAAGACCAAC 1579 || |||||||| | |||||||| ||| ||||| |||||||||||||| | ||||| ||| Sbjct 676145 GAGTTCAACAAGTGCAATGCCATCTGGTTCTACAGACCTGCGACCACCAGCAAGACAAAC 676204 Query 1580 ATAGCCGAGGCTATTGCCCATGCTGTACCCTTCTATGGCTGTGTTAACTGGACTAATGAG 1639 || | |||||||||||||||||||| | || |||||||||| ||||||||||||||| Sbjct 676205 ATCGTGGAGGCTATTGCCCATGCTGTGCTATTTTATGGCTGTGGAAACTGGACTAATGAG 676264 Query 1640 AACTTCCCATTTAATGACTGCGTTGATAAAATGCTTATATGGTGGGAGGAGGGAAAAATG 1699 ||||| || || | |||||| || ||||| ||| || ||||||||||| ||||| | | Sbjct 676265 AACTTTCCTTTCAGTGACTGGGTAGATAAGATGGCGATTTGGTGGGAGGAAGGAAAGACG 676324 Query 1700 ACCAATAAAGTAGTGGAATCCGCAAAAGCGATACTgggggggTCTGCTGTAC-GAGTTGA 1758 || | |||| | || || || || ||||| || |||| ||||| || || | | ||||| Sbjct 676325 ACTAGTAAAATCGTAGAGTCTGCTAAAGCCATTTTGGGTGGGTCGGCCGTGCGGGGTTGA 676384 Query 1759 TCAAAAGTGTAAGGGGTCTGTTTGTATTGAACCTACTCCTGTAATAATTACCAGTAATAC 1818 |||||| ||||| || ||||| |||||||| || |||||| | ||||||||||||| Sbjct 676385 TCAAAAATGTAAAGGTTCTGTGCAAATTGAACCAACGCCTGTACTTATTACCAGTAATAT 676444 Query 1819 TGATATGTGCATGATTGTGGATGGAAATTCTACTACAATGGAACACAGAATTCCTTTGGA 1878 ||| ||| | | || ||||| || ||||| ||||||| | |||||||| Sbjct 676445 ATATAAGTGTACTGTGGTTGATGGGAACAGCACTACCTTGGAACATAAGGAGCCTTTGGA 676504 Query 1879 GGAAAGAATGTTCC 1892 |||||||||||||| Sbjct 676505 GGAAAGAATGTTCC 676518 Score = 131 bits (144), Expect = 5e-27 Identities = 226/323 (70%), Gaps = 13/323 (4%) Strand=Plus/Plus Query 3257 GGATACAGCACCCCCTGGGGGTACTTTGATTTCAACAGATTCCACTGCCATTTCTCTCCA 3316 || ||||||||||| |||| ||| | | ||||| |||||||| ||||| | ||| Sbjct 677964 GGTTACAGCACCCC-TGGGCCTACCTCAACTTCAAGAGATTCCAGTGCCACTGGAGTCCC 678022 Query 3317 AGAGACTGGCAGAGACTCATCAACAACCATTGGGGGATTAGACCGAAAGCACTCAAATTC 3376 ||||||| ||| | |||||||||||| | ||||| || |||| ||||| | | || Sbjct 678023 CGAGACTGTCAGCGGCTCATCAACAACTACTGGGGCATCCGACCAAAAGCTTGTAGAATC 678082 Query 3377 AAGATATTCAATGTGCAAGTTAAAGAAGTCACGACGCAAGACCAGACAAAGACTATTGCT 3436 || || ||||| | |||||||| || |||| | | || | |||||| ||||| Sbjct 678083 AAAATTTTCAACATACAAGTTAAGGAGGTCATGGAGGCAGCGGGCATAAAGACAATTGCC 678142 Query 3437 AACAACCTTACCTCTACAATCCAGATATTCACGGATAATGAACACCAGCTGCCCTATGTT 3496 || ||||| || || || |||||||| || | ||| | | |||||||||| ||||| Sbjct 678143 AATAACCTAACGTCAACCATCCAGATTTTTGCAGATGACACATACCAGCTGCCATATGTG 678202 Query 3497 CTGGGCTCGGCCACGGAGGGGACGATGC-CAC---CGTTCCCCTCAGATG--TGTATGCC 3550 | || ||||| |||||| ||| ||| | || ||| |||| | ||||| Sbjct 678203 ATTGGAAATGCCACCGAGGGG----TGCTCACCCGCTTTTCCCGGTGATGTTTTTATGC- 678257 Query 3551 TTGCCCCAGTACGGCTACTGCAC 3573 |||| |||||| | | |||||| Sbjct 678258 -TGCCTCAGTACTGGTGCTGCAC 678279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16308310816155