Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physeter_20catodon_20[refseq_20GCF_5F000472045.1_202013-09-30] 11,711 sequences; 2,280,727,784 total letters Query= NC_006148.1 Length=4432 Score E Sequences producing significant alignments: (Bits) Value seq11495 122 2e-24 >seq11495 Length=911852 Score = 122 bits (134), Expect = 2e-24 Identities = 202/289 (70%), Gaps = 11/289 (4%) Strand=Plus/Plus Query 3795 CAGGTATGGTGTGGTCTAATAGAGACATTTACTTACAGGGGCCTATTTGGGCTAAAATTC 3854 |||||||| | ||| ||| |||||| || | ||||| ||||||||||| ||||||| Sbjct 678921 CAGGTATG-TATGG----ATAAAGACATCTATCTCCAGGGCCCTATTTGGGCGAAAATTC 678975 Query 3855 CAAATACAGATGGACATTTTCATCCTTCTCCCAGAATGGGTGGTTTTGGATTAAAACATC 3914 | | || |||| ||||||| ||| ||| | ||||| || ||||| | ||||||| Sbjct 678976 CTGACACTGATGACAATTTTCAGCCTCATCCTAACATGGGAGGCTTTGGGTGCAAACATC 679035 Query 3915 CTCCGCCTATGATTCTGATCAAAAATACACCAGTTCCTGCTGATCCTCCAACTACCTTCA 3974 | || || ||||||||| |||||||| ||||| ||||| || ||||| | |||||| Sbjct 679036 CACCTCCGATGATTCTGCAGAAAAATACTCCAGTCCCTGCAGAACCTCCTGCGGCCTTCA 679095 Query 3975 ATCCAATGCCACAGACTA---GTTTCATTACTGAATACAGTACAGGACAAGTAACTGTTG 4031 | || ||| | || ||| |||| | | || || || || ||||| || | Sbjct 679096 CTGAAA---CACCTATTAAGTCTTTTATTAGTCAGTATCCCACTGGTCAGGTAACAGTGG 679152 Query 4032 AAATGTTGTGGGAGGTACAGAAAGAATCCTCCAAAAGATGGAATCCAGA 4080 |||| |||||| | | ||||||| |||| | ||| |||| || Sbjct 679153 AAATTGATTGGGAGCGAAAATCAGAATCCAGCAAACGCTGGTATCCCGA 679201 Score = 98.7 bits (108), Expect = 3e-17 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 1280 CAAGAGAAACACCATCTGGCTGTATGGTCCAGCTACTACCGGCAAAACCATCATCGCTCA 1339 |||| | || |||||||| | || | || || || ||| |||| || | ||||| | Sbjct 676153 CAAGTGCAATGCCATCTGGTTCTACAGACCTGCGACCACCAGCAAGACAAACATCGTGGA 676212 Query 1340 AGCTATTGCACATGCTGTTAAACTGTTTGCTGGTGTTAATTGGACTAATGAAAACTTTCC 1399 |||||||| |||||||| | | | || ||| || ||||||||||| |||||||| Sbjct 676213 GGCTATTGCCCATGCTGTGCTATTTTATGGCTGTGGAAACTGGACTAATGAGAACTTTCC 676272 Query 1400 CTTCTGTAACTGTCCAGGGAAACTGCTTATCTGGTGGGAGGAGGGCAAGATGACAAACAA 1459 ||| || |||| || || || || ||||||||||| || |||| ||| | || Sbjct 676273 TTTCAGTGACTGGGTAGATAAGATGGCGATTTGGTGGGAGGAAGGAAAGACGACTAGTAA 676332 Query 1460 AATGGTGGAGACGGCTAAATGTATACTGGGGGGATCTGCTGT 1501 ||| || ||| | |||||| || |||| || || || || Sbjct 676333 AATCGTAGAGTCTGCTAAAGCCATTTTGGGTGGGTCGGCCGT 676374 Score = 89.7 bits (98), Expect = 1e-14 Identities = 301/463 (65%), Gaps = 18/463 (4%) Strand=Plus/Plus Query 2663 TCCTCAGGTGATTGGCATTGCGATACCAAGTGG-ATGGGAGACCACGTCATTACAAAGTC 2721 |||||||| |||||||| | ||| | ||| | |||| | | ||||| || || Sbjct 677821 TCCTCAGGAAATTGGCAT-GTGATTGTCAATGGCAAGGGA-ATCTCGTCACCACTTGTTC 677878 Query 2722 AACCAGAACTTGGGTGCTCCCCACTTACGGGAATCATCTCTACGGGCCTATCAACTTTGA 2781 ||||||||||||||||||||| | || | || |||||||| || || || | Sbjct 677879 CACCAGAACTTGGGTGCTCCCCTCCTATGACAACAATCTCTACAAGCAGATTAAAGGCCA 677938 Query 2782 CGGCACC-ACAGGTTCGGGTGCTAATGCAGCCTATGCAGGATACAAGACTCCCTGGGGGT 2840 | | || ||| || || | || || || |||| || ||||||| | Sbjct 677939 TGCCTCCGACATGTCCGCCTACT-----------TG--GGTTACAGCAC-CCCTGGGCCT 677984 Query 2841 ACTTTGACTTCAATCGATTCCATTGCCACTTCTCCCCCCGAGACTGGCAAAGACTCATCA 2900 || | ||||||| ||||||| ||||||| ||||||||||| || | ||||||| Sbjct 677985 ACCTCAACTTCAAGAGATTCCAGTGCCACTGGAGTCCCCGAGACTGTCAGCGGCTCATCA 678044 Query 2901 ACAACCACACAGGCATCAGGCCGAAAGGACTCAAAATCAAAGTCTTTAACGTCCAAGTCA 2960 ||||| || |||||| | || |||| | ||||||| | || ||| | ||||| | Sbjct 678045 ACAACTACTGGGGCATCCGACCAAAAGCTTGTAGAATCAAAATTTTCAACATACAAGTTA 678104 Query 2961 AAGAAGTTACAACACAAGATTCAACGAAAACAATTGCCAACAATCTCACCAGCACCGTAC 3020 | || || | || | || ||||||||||| || || || ||| | | Sbjct 678105 AGGAGGTCATGGAGGCAGCGGGCATAAAGACAATTGCCAATAACCTAACGTCAACCATCC 678164 Query 3021 AGATCTTTGCGGACGAGAACTACGACTTACCATATGTATTAGGCAGTGCTACACAAGGCA 3080 |||| ||||| || || | ||| | | |||||||| | || | ||| || | || Sbjct 678165 AGATTTTTGCAGATGACACATACCAGCTGCCATATGTGATTGGAAATGCCACCGAGGGGT 678224 Query 3081 CATTTCCTCCATTTCCCAATGATGTATTTATGTTACCACAATA 3123 | || | |||||| |||||| |||||| | || || || Sbjct 678225 GCTCACCCGCTTTTCCCGGTGATGTTTTTATGCTGCCTCAGTA 678267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14068597735655