Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physeter_20catodon_20[refseq_20GCF_5F000472045.1_202013-09-30] 11,711 sequences; 2,280,727,784 total letters Query= NC_006152.1 Length=4642 Score E Sequences producing significant alignments: (Bits) Value seq11495 232 2e-57 >seq11495 Length=911852 Score = 232 bits (256), Expect = 2e-57 Identities = 274/370 (74%), Gaps = 1/370 (0%) Strand=Plus/Plus Query 1316 TTCAACAAGAGGAACACCGTCTGGCTCTACGGACCCGCCACGACCGGCAAGACCAACATC 1375 ||||||||| | || || ||||| ||||| |||| || || ||| ||||||| |||||| Sbjct 676148 TTCAACAAGTGCAATGCCATCTGGTTCTACAGACCTGCGACCACCAGCAAGACAAACATC 676207 Query 1376 GCGGAGGCCATCGCCCACACTGTGCCCTTTTACGGCTGCGTGAACTGGACCAATGAAAAC 1435 | |||||| || ||||| |||||| ||||| ||||| | |||||||| ||||| ||| Sbjct 676208 GTGGAGGCTATTGCCCATGCTGTGCTATTTTATGGCTGTGGAAACTGGACTAATGAGAAC 676267 Query 1436 TTTCCCTTTAATGACTGTGTGGACAAAATGCTCATTTGGTGGGAGGAGGGAAAGATGACC 1495 ||||| || | |||||| || || || ||| |||||||||||||| ||||||| ||| Sbjct 676268 TTTCCTTTCAGTGACTGGGTAGATAAGATGGCGATTTGGTGGGAGGAAGGAAAGACGACT 676327 Query 1496 AACAAGGTGGTTGAATCCGCCAAGGCCATCCTGGGGGGCTCAAAGGTGC-GGGTCGATCA 1554 | || | || || || || || ||||| |||| || || |||| |||| ||||| Sbjct 676328 AGTAAAATCGTAGAGTCTGCTAAAGCCATTTTGGGTGGGTCGGCCGTGCGGGGTTGATCA 676387 Query 1555 GAAATGTAAATCCTCTGTTCAAATTGATTCTACCCCTGTCATTGTAACTTCCAATACAAA 1614 ||||||||| ||||| |||||||| | || ||||| || | || |||| | | Sbjct 676388 AAAATGTAAAGGTTCTGTGCAAATTGAACCAACGCCTGTACTTATTACCAGTAATATATA 676447 Query 1615 CATGTGTGTGGTGGTGGATGGGAATTCCACGACCTTTGAACACCAGCAGCCGCTGGAGGA 1674 | |||| ||||| |||||||| ||| ||||| ||||| || |||| ||||||| Sbjct 676448 TAAGTGTACTGTGGTTGATGGGAACAGCACTACCTTGGAACATAAGGAGCCTTTGGAGGA 676507 Query 1675 CCGCATGTTC 1684 | |||||| Sbjct 676508 AAGAATGTTC 676517 Score = 161 bits (178), Expect = 3e-36 Identities = 286/416 (69%), Gaps = 13/416 (3%) Strand=Plus/Plus Query 2892 TCGTCACCAAGT---CCACCCGAACCTGGGTGCTGCCCAGCTACAACAACCACCAGTACC 2948 ||||||||| | ||||| |||| |||||||| ||| ||| ||||| | | ||| Sbjct 677863 TCGTCACCACTTGTTCCACCAGAACTTGGGTGCTCCCCTCCTATGACAACAATCTCTACA 677922 Query 2949 GAGAGATCAAAAGCGGCTCCGTCGACGGAAGCAACGCCAACGCCTACTTTGGATACAGCA 3008 |||| ||| || || |||| | | | ||||||||| || ||||||| Sbjct 677923 AGCAGATTAAAGGCCATGCCTCCGAC-------ATGTC--CGCCTACTTGGGTTACAGCA 677973 Query 3009 CCCCCTGGGGGTACTTTGACTTTAACCGCTTCCACAGCCACTGGAGCCCCCGAGACTGGC 3068 |||| |||| ||| | |||| || | ||||| |||||||||| ||||||||||| | Sbjct 677974 CCCC-TGGGCCTACCTCAACTTCAAGAGATTCCAGTGCCACTGGAGTCCCCGAGACTGTC 678032 Query 3069 AAAGACTCATCAACAACTACTGGGGCTTCAGACCCCGGTCCCTCAGAGTCAAAATCTTCA 3128 | | ||||||||||||||||||||| || |||| | ||| ||||||| |||| Sbjct 678033 AGCGGCTCATCAACAACTACTGGGGCATCCGACCAAAAGCTTGTAGAATCAAAATTTTCA 678092 Query 3129 ACATTCAAGTCAAAGAGGTCACGGTGCAGGACTCCACCACNNNNATCGCCAACAACCTCA 3188 |||| ||||| || ||||||| || | | || | || ||||| ||||| | Sbjct 678093 ACATACAAGTTAAGGAGGTCATGGAGGCAGCGGGCATAAAGACAATTGCCAATAACCTAA 678152 Query 3189 CCTCCACCGTCCAAGTGTTTACGGACGACGACTACCAGCTGCCCTACGTCGTCGGCAACG 3248 | || ||| |||| | ||| | || ||| ||||||||||| || || | || || | Sbjct 678153 CGTCAACCATCCAGATTTTTGCAGATGACACATACCAGCTGCCATATGTGATTGGAAATG 678212 Query 3249 GGACCGAGGGATGCCTGCCGGCCTTCCCTCCGCAGGTCTTTACGCTGCCGCAGTAC 3304 |||||||| ||| || || || || | || |||| |||||| |||||| Sbjct 678213 CCACCGAGGGGTGCTCACCCGCTTTTCCCGGTGATGTTTTTATGCTGCCTCAGTAC 678268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14740511659805