Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physeter_20catodon_20[refseq_20GCF_5F000472045.1_202013-09-30] 11,711 sequences; 2,280,727,784 total letters Query= NC_006260.1 Length=4721 Score E Sequences producing significant alignments: (Bits) Value seq11495 170 6e-39 >seq11495 Length=911852 Score = 170 bits (188), Expect = 6e-39 Identities = 273/389 (70%), Gaps = 5/389 (1%) Strand=Plus/Plus Query 1286 GCTGGGCCCAGAAAAAGTTCGGGAAGCGCAACACCATCTGGCTGTTTGGGCCCGCCACCA 1345 ||||||||| | ||||| ||| |||| |||||||| | | | || || |||| Sbjct 676131 GCTGGGCCCGGTGGGAGTTCAACAAGTGCAATGCCATCTGGTTCTACAGACCTGCGACCA 676190 Query 1346 CCGGCAAGACCAACATTGCGGAAGCCATCGCCCACGCCGTGCCCTTCTACGGCTGCGTCA 1405 || ||||||| ||||| | ||| || || ||||| || |||| || || ||||| | | Sbjct 676191 CCAGCAAGACAAACATCGTGGAGGCTATTGCCCATGCTGTGCTATTTTATGGCTGTGGAA 676250 Query 1406 ACTGGACCAATGAGAACTTTCCCTTCAACGATTGCGTCGACAAGATGGTGATCTGGTGGG 1465 ||||||| |||||||||||||| |||| || || || || ||||||| ||| ||||||| Sbjct 676251 ACTGGACTAATGAGAACTTTCCTTTCAGTGACTGGGTAGATAAGATGGCGATTTGGTGGG 676310 Query 1466 AGGAGGGCAAGATGACGGCCAAGGTCGTGGAGTCCGCCAAGGCCATTCTCGGCGG--CAG 1523 |||| || |||| ||| || |||| ||||| || || |||||| | || || | | Sbjct 676311 AGGAAGGAAAGACGACTAGTAAAATCGTAGAGTCTGCTAAAGCCATTTTGGGTGGGTCGG 676370 Query 1524 CAAGGTGC-GCGTGGACCAAAAGTGCAAGTCGTCCGCCCAGATCGACCCCACCCCCGTGA 1582 | |||| | || || ||||| || || || | || || || || || || || Sbjct 676371 C--CGTGCGGGGTTGATCAAAAATGTAAAGGTTCTGTGCAAATTGAACCAACGCCTGTAC 676428 Query 1583 TCGTCACCTCCAACACCAACATGTGCGCCGTGATTGACGGGAACAGCACCACCTTCGAGC 1642 | | ||| || | | | ||| | ||| |||| ||||||||||| ||||| || | Sbjct 676429 TTATTACCAGTAATATATATAAGTGTACTGTGGTTGATGGGAACAGCACTACCTTGGAAC 676488 Query 1643 ACCAGCAGCCGTTGCAGGACCGGATGTTC 1671 | || |||| ||| |||| | |||||| Sbjct 676489 ATAAGGAGCCTTTGGAGGAAAGAATGTTC 676517 Score = 123 bits (136), Expect = 7e-25 Identities = 315/468 (67%), Gaps = 31/468 (7%) Strand=Plus/Plus Query 2895 CCTCAGGAAATTGGCATTGCGATTCCACATGGCTGGGCGACAGAGTCATTACCACCAG-- 2952 ||||||||||||||||| | |||| ||||| || | |||| |||| | Sbjct 677822 CCTCAGGAAATTGGCAT-GTGATTGTCAATGGCAAGGGAATCTCGTCA---CCACTTGTT 677877 Query 2953 -CACCCGAACCTGGGCCCTGCCCACCTACAACAACCACCTCTACAAGCAAATCTCCAGTG 3011 |||| |||| |||| || ||| |||| ||||| | ||||||||||| || Sbjct 677878 CCACCAGAACTTGGGTGCTCCCCTCCTATGACAACAATCTCTACAAGCAGATT------- 677930 Query 3012 AAACTGCAGGTAGTACCAACGACAA---CACCTACTTCGGCTACAGCACCCCCTGGGGGT 3068 || ||| | || ||||| | ||||||| || ||||||||||| |||| | Sbjct 677931 -AA----AGGCCATGCCTCCGACATGTCCGCCTACTTGGGTTACAGCACCCC-TGGGCCT 677984 Query 3069 ATTTTGACTTTAACAGATTCCACTGCCACTTCTCACCACGTGACTGGCAGCGACTCATCA 3128 | | |||| || |||||||| ||||||| || || ||||| ||||| ||||||| Sbjct 677985 ACCTCAACTTCAAGAGATTCCAGTGCCACTGGAGTCCCCGAGACTGTCAGCGGCTCATCA 678044 Query 3129 ACAACAACTGGGGATTCCGGCCCAAGAAGCT--GCGGTTCAAGCTCTTCAACATCCAGGT 3186 ||||| ||||||| |||| || | ||||| | |||| | |||||||| || || Sbjct 678045 ACAACTACTGGGGCATCCGACC--AAAAGCTTGTAGAATCAAAATTTTCAACATACAAGT 678102 Query 3187 CAAGGAGGTCACGACGAATGACGGCGTTACGACCATCGCTAATAACCTTACCAGCACGAT 3246 |||||||||| | | | ||| | | ||| || || |||||||| || || || Sbjct 678103 TAAGGAGGTCATGGAGGCAGCGGGCATAAAGACAATTGCCAATAACCTAACGTCAACCAT 678162 Query 3247 TCAGGTATTCTCGGACTCGGAATACCAGCTGCCGTACGTCCTCGGCTCTGCGCACC-AGG 3305 ||| | || | || |||||||||||| || || | || ||| |||| ||| Sbjct 678163 CCAGATTTTTGCAGATGACACATACCAGCTGCCATATGTGATTGGAAATGC-CACCGAGG 678221 Query 3306 GCTGC-CTGCCTCCGTTCCCGGCGGACGTCTTCATGATTCCTCAGTAC 3352 | ||| | || | ||||||| || || || ||| | ||||||||| Sbjct 678222 GGTGCTCACCCGCTTTTCCCGG-TGATGTTTTTATGCTGCCTCAGTAC 678268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14993279278890