Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physeter_20catodon_20[refseq_20GCF_5F000472045.1_202013-09-30] 11,711 sequences; 2,280,727,784 total letters Query= NC_006261.1 Length=4393 Score E Sequences producing significant alignments: (Bits) Value seq11495 165 2e-37 >seq11495 Length=911852 Score = 165 bits (182), Expect = 2e-37 Identities = 255/361 (71%), Gaps = 5/361 (1%) Strand=Plus/Plus Query 1212 GCAACACCATCTGGCTGTTTGGACCCGCCACCACCGGCAAGACCAACATTGCGGAAGCCA 1271 |||| |||||||| | | |||| || |||||| ||||||| ||||| | ||| || | Sbjct 676158 GCAATGCCATCTGGTTCTACAGACCTGCGACCACCAGCAAGACAAACATCGTGGAGGCTA 676217 Query 1272 TCGCCCACGCCGTGCCCTTCTACGGCTGCGTCAACTGGACCAATGAGAACTTTCCCTTCA 1331 | ||||| || |||| || || ||||| | |||||||| |||||||||||||| |||| Sbjct 676218 TTGCCCATGCTGTGCTATTTTATGGCTGTGGAAACTGGACTAATGAGAACTTTCCTTTCA 676277 Query 1332 ATGATTGCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGCAAGATGACGGCCAAGGTCG 1391 ||| || || || ||||||| ||| ||||||||||| || |||| ||| || ||| Sbjct 676278 GTGACTGGGTAGATAAGATGGCGATTTGGTGGGAGGAAGGAAAGACGACTAGTAAAATCG 676337 Query 1392 TGGAGTCCGCCAAGGCCATTCTCGGCGG--CAGCAAGGTGC-GCGTGGACCAAAAGTGCA 1448 | ||||| || || |||||| | || || | || |||| | || || ||||| || | Sbjct 676338 TAGAGTCTGCTAAAGCCATTTTGGGTGGGTCGGC--CGTGCGGGGTTGATCAAAAATGTA 676395 Query 1449 AGTCGTCCGCCCAGATCGACCCCACCCCCGTGATCGTCACCTCCAACACCAACATGTGCG 1508 | || | || || || || || || || | | ||| || | | | ||| Sbjct 676396 AAGGTTCTGTGCAAATTGAACCAACGCCTGTACTTATTACCAGTAATATATATAAGTGTA 676455 Query 1509 CCGTGATTGACGGGAACAGCACCACCTTCGAGCACCAGCAGCCTCTCCAGGACCGGATGT 1568 | ||| |||| ||||||||||| ||||| || || || ||||| | |||| | |||| Sbjct 676456 CTGTGGTTGATGGGAACAGCACTACCTTGGAACATAAGGAGCCTTTGGAGGAAAGAATGT 676515 Query 1569 T 1569 | Sbjct 676516 T 676516 Score = 147 bits (162), Expect = 6e-32 Identities = 319/467 (68%), Gaps = 24/467 (5%) Strand=Plus/Plus Query 2793 TCCTCGGGAAATTGGCATTGCGATTCCACATGGCTGGGCGACAGAGTCATCACCACCAG- 2851 ||||| |||||||||||| | |||| ||||| || | || ||||||| | Sbjct 677821 TCCTCAGGAAATTGGCAT-GTGATTGTCAATGGCAAGGGAATC---TCGTCACCACTTGT 677876 Query 2852 --CACCCGAACCTGGGCCCTGCCCACCTACAACAACCACCTCTACAAGCAAATCTCCAAC 2909 |||| |||| |||| || ||| |||| ||||| | ||||||||||| || || Sbjct 677877 TCCACCAGAACTTGGGTGCTCCCCTCCTATGACAACAATCTCTACAAGCAGATTA--AA- 677933 Query 2910 GGGACATCGGGAGGAGCCACCAACGACAACACCTACTTCGGCTACAGCACCCCCTGGGGG 2969 || ||| ||| || || | ||||||| || ||||||||||| |||| Sbjct 677934 -GGCCAT--------GCCTCCGACATGTCCGCCTACTTGGGTTACAGCACCCC-TGGGCC 677983 Query 2970 TATTTTGACTTTAACAGATTCCACTGCCACTTTTCACCACGTGACTGGCAGCGACTCATC 3029 || | |||| || |||||||| ||||||| || || ||||| ||||| |||||| Sbjct 677984 TACCTCAACTTCAAGAGATTCCAGTGCCACTGGAGTCCCCGAGACTGTCAGCGGCTCATC 678043 Query 3030 AACAACAACTGGGGATTCCGGCCCAAGAGACT-CAGCTTCAAGCTCTTCAACATCCAGGT 3088 |||||| ||||||| ||| | |||| || | || |||| | |||||||| || || Sbjct 678044 AACAACTACTGGGGCATCC-GACCAAAAGCTTGTAGAATCAAAATTTTCAACATACAAGT 678102 Query 3089 CAAGGAGGTCACGCAGAATGAAGGCACCAAGACCATCGCCAATAACCTCACCAGCACCAT 3148 |||||||||| | || | |||| ||||| || ||||||||||| || ||||| Sbjct 678103 TAAGGAGGTCATGGAGGCAGCGGGCATAAAGACAATTGCCAATAACCTAACGTCAACCAT 678162 Query 3149 CCAGGTGTTTACGGACTCGGAGTACCAGCTGCCGTACGTTCTCGGCTCTGCCCACCAGGG 3208 |||| | ||| | || ||||||||||| || || | || |||| | |||| Sbjct 678163 CCAGATTTTTGCAGATGACACATACCAGCTGCCATATGTGATTGGAAATGCCACCGAGGG 678222 Query 3209 CTGC-CTGCCTCCGTTCCCGGCGGACGTGTTCATGATTCCCCAGTAC 3254 ||| | || | ||||||| || || || ||| | || |||||| Sbjct 678223 GTGCTCACCCGCTTTTCCCGG-TGATGTTTTTATGCTGCCTCAGTAC 678268 Score = 104 bits (114), Expect = 7e-19 Identities = 188/275 (68%), Gaps = 0/275 (0%) Strand=Plus/Plus Query 3957 GACGTGTACCTGCAGGGTCCCATCTGGGCCAAGATTCCTCACACGGACGGCAACTTCCAC 4016 ||| | || || ||||| || || ||||| || |||||| |||| || | ||| || || Sbjct 678939 GACATCTATCTCCAGGGCCCTATTTGGGCGAAAATTCCTGACACTGATGACAATTTTCAG 678998 Query 4017 CCGTCTCCGCTGATGGGCGGCTTTGGCCTGAAACATCCTCCGCCTCAGATCCTGATCAAG 4076 || ||| ||||| |||||||| |||||||| || || ||| ||| || Sbjct 678999 CCTCATCCTAACATGGGAGGCTTTGGGTGCAAACATCCACCTCCGATGATTCTGCAGAAA 679058 Query 4077 AACACGCCTGTACCTGCGGATCCTCCGACCACCTTCAACCAGTCAAAGCTGAACTCTTTC 4136 || || || || ||||| || ||||| | |||||| | || | || ||||| Sbjct 679059 AATACTCCAGTCCCTGCAGAACCTCCTGCGGCCTTCACTGAAACACCTATTAAGTCTTTT 679118 Query 4137 ATCACGCAATACAGCACCGGACAGGTCAGCGTGGAAATTGAATGGGAGCTGCAGAAGGAA 4196 || | || || ||| || ||||| | ||||||||||| ||||||| | ||| Sbjct 679119 ATTAGTCAGTATCCCACTGGTCAGGTAACAGTGGAAATTGATTGGGAGCGAAAATCAGAA 679178 Query 4197 AACAGCAAGCGCTGGAACCCCGAGATCCAGTACAC 4231 |||||| |||||| | ||||||||||| | ||| Sbjct 679179 TCCAGCAAACGCTGGTATCCCGAGATCCAATTCAC 679213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 13943813721170