Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physeter_20catodon_20[refseq_20GCF_5F000472045.1_202013-09-30] 11,711 sequences; 2,280,727,784 total letters Query= NC_006263.1 Length=4682 Score E Sequences producing significant alignments: (Bits) Value seq11495 232 2e-57 >seq11495 Length=911852 Score = 232 bits (256), Expect = 2e-57 Identities = 255/338 (75%), Gaps = 1/338 (0%) Strand=Plus/Plus Query 1244 GACCTGCGACCACCGGCAAGACCAACATCGCGGAGGCTATTGCCCATGCTGTGCCGTTCT 1303 |||||||||||||| ||||||| ||||||| ||||||||||||||||||||||| || | Sbjct 676179 GACCTGCGACCACCAGCAAGACAAACATCGTGGAGGCTATTGCCCATGCTGTGCTATTTT 676238 Query 1304 ATGGATGCGTTAACTGGACCAACGAGAACTTTCCGTTCAACGACTGCGTCGAAAAGATGA 1363 |||| || | |||||||| || ||||||||||| |||| ||||| || || |||||| Sbjct 676239 ATGGCTGTGGAAACTGGACTAATGAGAACTTTCCTTTCAGTGACTGGGTAGATAAGATGG 676298 Query 1364 TTATCTGGTGGGAAGAGGGCAAAATGACCGCCAAGGTGGTGGAAACGGCTAAAGCGATTC 1423 || |||||||| || || || | ||| || | || || | |||||||| ||| Sbjct 676299 CGATTTGGTGGGAGGAAGGAAAGACGACTAGTAAAATCGTAGAGTCTGCTAAAGCCATTT 676358 Query 1424 TGGGAGGATCTCGGGTG-AGAGTGGACCAAAAATGCAAAGCTTCGGTTCCGATCGAACCG 1482 |||| || || ||| | || || |||||||| |||| ||| || | || ||||| Sbjct 676359 TGGGTGGGTCGGCCGTGCGGGGTTGATCAAAAATGTAAAGGTTCTGTGCAAATTGAACCA 676418 Query 1483 ACGCCGGTCATTATTACCAGTAACACCAACATGTGTTATGTCATCGACGGGAACACGACT 1542 ||||| || ||||||||||||| | | | |||| ||| | || ||||||| ||| Sbjct 676419 ACGCCTGTACTTATTACCAGTAATATATATAAGTGTACTGTGGTTGATGGGAACAGCACT 676478 Query 1543 ACGTTCGAGCATAAGCAGCCGTTGGAGGACAGGATGTT 1580 || || || |||||| |||| |||||||| || ||||| Sbjct 676479 ACCTTGGAACATAAGGAGCCTTTGGAGGAAAGAATGTT 676516 Score = 102 bits (112), Expect = 2e-18 Identities = 207/304 (68%), Gaps = 14/304 (5%) Strand=Plus/Plus Query 2925 TCCTCGGGAAATTGGCATTGCGATTCCCAATGGCTGGACAACGGAGTCGTTACCCGAACC 2984 ||||| |||||||||||| | |||| ||||||| | || ||| || | || Sbjct 677821 TCCTCAGGAAATTGGCAT-GTGATTGTCAATGGCAAGGGAATCTCGTCACCACTTGTTCC 677879 Query 2985 ACTCGAACCTGGGTCCTGCCCAGCTACAACAACCACTTGTACAAGCGGATCCAAGGACCG 3044 || |||| ||||| || ||| ||| ||||| | | ||||||| ||| |||| | Sbjct 677880 ACCAGAACTTGGGTGCTCCCCTCCTATGACAACAATCTCTACAAGCAGATTAAAGGCCAT 677939 Query 3045 GGAGGAACCGACC---CCAACAATAAATTCTTTGGATTCAGCACCCCCTGGGGGTACTTT 3101 | ||||| || | | ||| || | ||||||||| |||| ||| | Sbjct 677940 GCCT---CCGACATGTCCGCCTA------CTTGGGTTACAGCACCCC-TGGGCCTACCTC 677989 Query 3102 GACTACAACCGATTCCACTGCCACTTCTCCCCCCGAGACTGGCAACGACTCATCAACAAC 3161 ||| ||| ||||||| ||||||| ||||||||||| || || |||||||||||| Sbjct 677990 AACTTCAAGAGATTCCAGTGCCACTGGAGTCCCCGAGACTGTCAGCGGCTCATCAACAAC 678049 Query 3162 AACTGGGGCATCCGACCCAAAGCGATGCGCTTTAGACTCTTTAACATCCAGGTTAAAGAA 3221 |||||||||||||||| ||||| | | | | | || ||||| || ||||| || Sbjct 678050 TACTGGGGCATCCGACCAAAAGCTTGTAGAATCAAAATTTTCAACATACAAGTTAAGGAG 678109 Query 3222 GTCA 3225 |||| Sbjct 678110 GTCA 678113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14868495264405