Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physeter_20catodon_20[refseq_20GCF_5F000472045.1_202013-09-30] 11,711 sequences; 2,280,727,784 total letters Query= NC_014468.1 Length=4286 Score E Sequences producing significant alignments: (Bits) Value seq11495 168 2e-38 >seq11495 Length=911852 Score = 168 bits (186), Expect = 2e-38 Identities = 284/398 (71%), Gaps = 11/398 (3%) Strand=Plus/Plus Query 2755 TCCACCCGAACCTGGAGCCTGCCCGCCTACAACAACCACCTCTACCGCCAGATCCA-GTC 2813 |||||| |||| ||| || ||| |||| ||||| | |||||| ||||| | | | Sbjct 677877 TCCACCAGAACTTGGGTGCTCCCCTCCTATGACAACAATCTCTACAAGCAGATTAAAGGC 677936 Query 2814 CAGCGGCACCGGAGACGGCA-CGTACTTTGGTTACAGCACGCCTTGGGGATACTTCGATT 2872 || || | || | | | | ||||| ||||||||||| ||| ||| ||| || | | Sbjct 677937 CAT--GCCTCCGACATGTCCGCCTACTTGGGTTACAGCACCCCT-GGGCCTACCTCAACT 677993 Query 2873 TCAATCGATTCCACTGCCACTTTTCTCCCAGGGACTGGCAGCGGCTCATCAACAACCACT 2932 |||| ||||||| ||||||| |||| | ||||| |||||||||||||||||| ||| Sbjct 677994 TCAAGAGATTCCAGTGCCACTGGAGTCCCCGAGACTGTCAGCGGCTCATCAACAACTACT 678053 Query 2933 GGGGCATCCG-CCCCAAGCGGCTCCACTTTAAGCTCTTCAACATCCAGGTCAAGGAGGTC 2991 |||||||||| || |||| | | | || | |||||||| || || ||||||||| Sbjct 678054 GGGGCATCCGACCAAAAGCTTGTAGA-ATCAAAATTTTCAACATACAAGTTAAGGAGGTC 678112 Query 2992 ACGACGACCGACGGCACCACGACCATCGCCAACAACCTCACCAGCACCATACAGGTCTTT 3051 | | | | | |||| | ||| || ||||| ||||| || ||||| ||| | ||| Sbjct 678113 ATGGAGGCAGCGGGCATAAAGACAATTGCCAATAACCTAACGTCAACCATCCAGATTTTT 678172 Query 3052 GCGGA-CACGGAGTACCAGCTCCCGTACGTGCTCGGCAACGCCCACGAGGGCTGC-CTGC 3109 || || || | |||||||| || || ||| | || || ||| |||||| ||| | | Sbjct 678173 GCAGATGACACA-TACCAGCTGCCATATGTGATTGGAAATGCCACCGAGGGGTGCTCACC 678231 Query 3110 CGCCGTTCCCGGCGGACGTCTTCATGCTGCCGCAGTAC 3147 ||| ||||||| || || || |||||||| |||||| Sbjct 678232 CGCTTTTCCCGG-TGATGTTTTTATGCTGCCTCAGTAC 678268 Score = 107 bits (118), Expect = 5e-20 Identities = 128/174 (74%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 1153 CAAGCGCAACACCGTCTGGCTCTTCGGGCCGGCCACGACCGGCAAGACGAACCTCGCCGA 1212 |||| |||| || ||||| ||| | | || || || ||| ||||||| ||| ||| || Sbjct 676153 CAAGTGCAATGCCATCTGGTTCTACAGACCTGCGACCACCAGCAAGACAAACATCGTGGA 676212 Query 1213 GGCCATCAGCCACTCGGTGCCCTTCTACGGCTGCGTCAACTGGACCAACGAGAACTTCCC 1272 ||| || ||| | |||| || || ||||| | |||||||| || |||||||| || Sbjct 676213 GGCTATTGCCCATGCTGTGCTATTTTATGGCTGTGGAAACTGGACTAATGAGAACTTTCC 676272 Query 1273 CTTCAACGACTGCGTGGACAAGATGATCATCTGGTGGGAGGAGGGCAAGATGAC 1326 |||| ||||| || || |||||| || ||||||||||| || |||| ||| Sbjct 676273 TTTCAGTGACTGGGTAGATAAGATGGCGATTTGGTGGGAGGAAGGAAAGACGAC 676326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 13601457578865