Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physeter_20catodon_20[refseq_20GCF_5F000472045.1_202013-09-30] 11,711 sequences; 2,280,727,784 total letters Query= NC_027429.1 Length=4590 Score E Sequences producing significant alignments: (Bits) Value seq11495 109 2e-20 >seq11495 Length=911852 Score = 109 bits (120), Expect = 2e-20 Identities = 249/372 (67%), Gaps = 7/372 (2%) Strand=Plus/Plus Query 1346 AATACCATCTGGCTCTACGGACCAGCTACCACCGGAAAGACTATTATAGCGCAAGCTATA 1405 ||| |||||||| ||||| |||| || |||||| | ||||| | || | | | ||||| Sbjct 676160 AATGCCATCTGGTTCTACAGACCTGCGACCACCAGCAAGACAAACATCGTGGAGGCTATT 676219 Query 1406 GCCCACGGTGCTGTCCTCTTT---GGAGGAGTCAATTGGACTAATGAAAACTTTCCCTTT 1462 ||||| |||||| || ||| || | | || ||||||||||| |||||||| || Sbjct 676220 GCCCA---TGCTGTGCTATTTTATGGCTGTGGAAACTGGACTAATGAGAACTTTCCTTTC 676276 Query 1463 TGTAATTGTCCTGGTAAACTGTTGATATGGTGGGAAGAGGGTAAAATGACACAAAAGATG 1522 || | || | ||| || ||| |||||||| || || || | ||| || || Sbjct 676277 AGTGACTGGGTAGATAAGATGGCGATTTGGTGGGAGGAAGGAAAGACGACTAGTAAAATC 676336 Query 1523 GTCGAAACCGCCAAATGTATATTAGGCGGTGCTGTTGTAC-CTGTGGATATCAAAGGCAA 1581 || || | || ||| || || || || | | || | || ||| ||| | || Sbjct 676337 GTAGAGTCTGCTAAAGCCATTTTGGGTGGGTCGGCCGTGCGGGGTTGATCAAAAATGTAA 676396 Query 1582 AATGGCTGAACTGTGTGAAACCACCCCTGTCATTATTACCAGTAATACCAACATGTGTCA 1641 | ||| | |||| | || ||||| ||||||||||||||| | | |||| Sbjct 676397 AGGTTCTGTGCAAATTGAACCAACGCCTGTACTTATTACCAGTAATATATATAAGTGTAC 676456 Query 1642 GGTCTTTGATGGTAACAGTAGCAGTTTTGAACATACCGAACCCTTAGAAGAAAGAATGTT 1701 || ||||||| ||||| | | || ||||||| || || || || ||||||||||| Sbjct 676457 TGTGGTTGATGGGAACAGCACTACCTTGGAACATAAGGAGCCTTTGGAGGAAAGAATGTT 676516 Query 1702 TATGTTTAGGTT 1713 | |||||||| Sbjct 676517 CCTTTTTAGGTT 676528 Score = 82.4 bits (90), Expect = 2e-12 Identities = 306/474 (65%), Gaps = 18/474 (4%) Strand=Plus/Plus Query 2729 CCTCGGGAGATTGGCATTGCGATACCCAATGGCTGGGCGACCACGTCATTACAAAATCTA 2788 |||| ||| |||||||| | ||| ||||||| || | | ||||| || || | Sbjct 677822 CCTCAGGAAATTGGCAT-GTGATTGTCAATGGCAAGGGAATCTCGTCACCACTTGTTCCA 677880 Query 2789 CCAGAACTTGGGTTCTGCCCTCTTACGGGAATCATCTCTACTCGCCCATCAACTTTGATG 2848 ||||||||||||| || ||||| || | || |||||||| || || || ||| Sbjct 677881 CCAGAACTTGGGTGCTCCCCTCCTATGACAACAATCTCTACAAGCAGATTAAAGGCCATG 677940 Query 2849 GAACCACAGGGAACGGAACCCAAG-CCGCTTACTGCGGATACGCTACCCCCTGGGCCTAC 2907 || || || | |||| |||| || ||| ||||| ||||||||| Sbjct 677941 CCTCC----------GA---CATGTCCGCCTACTTGGGTTACAGCACCCC-TGGGCCTAC 677986 Query 2908 TTTGACTTTAACCGATTCCACTGCCACTTTTCCCCCCGAGACTGGCAAAGACTCATTAAC 2967 | |||| || ||||||| ||||||| ||||||||||| || | ||||| ||| Sbjct 677987 CTCAACTTCAAGAGATTCCAGTGCCACTGGAGTCCCCGAGACTGTCAGCGGCTCATCAAC 678046 Query 2968 AACCATACCGGAATACGACCAGTCGGACTCAAATTCAAGCTGTTCAACATCCAGGTCAAG 3027 ||| | || || |||||| | | | |||| | |||||||| || || ||| Sbjct 678047 AACTACTGGGGCATCCGACCAAAAGCTTGTAGAATCAAAATTTTCAACATACAAGTTAAG 678106 Query 3028 GAAATCACAGTACAAGATTCGACCAAAACGATCGCCAACAATCTCACCAGCACCGTACAG 3087 || ||| | || | || || || ||||| || || || ||| | ||| Sbjct 678107 GAGGTCATGGAGGCAGCGGGCATAAAGACAATTGCCAATAACCTAACGTCAACCATCCAG 678166 Query 3088 GTCTTTGCGGA-CACGGAGCACCAGCTCCCGTACGTATTAGGAAATGCCACGCAGGGCAC 3146 | ||||| || || | ||||||| || || || | ||||||||||| |||| Sbjct 678167 ATTTTTGCAGATGACACA-TACCAGCTGCCATATGTGATTGGAAATGCCACCGAGGGGTG 678225 Query 3147 GTTTCCTCCCTTTCCGGCTGAAGTCTTTCAGTTGCCTCAGTACGGCTACTGTAC 3200 | || | ||||| | ||| || ||| | ||||||||||| | | ||| || Sbjct 678226 CTCACCCGCTTTTCCCGGTGATGTTTTTATGCTGCCTCAGTACTGGTGCTGCAC 678279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14574132973825