Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Physeter_20catodon_20[refseq_20GCF_5F000472045.1_202013-09-30]
11,711 sequences; 2,280,727,784 total letters
Query= NC_027429.1
Length=4590
Score E
Sequences producing significant alignments: (Bits) Value
seq11495 109 2e-20
>seq11495
Length=911852
Score = 109 bits (120), Expect = 2e-20
Identities = 249/372 (67%), Gaps = 7/372 (2%)
Strand=Plus/Plus
Query 1346 AATACCATCTGGCTCTACGGACCAGCTACCACCGGAAAGACTATTATAGCGCAAGCTATA 1405
||| |||||||| ||||| |||| || |||||| | ||||| | || | | | |||||
Sbjct 676160 AATGCCATCTGGTTCTACAGACCTGCGACCACCAGCAAGACAAACATCGTGGAGGCTATT 676219
Query 1406 GCCCACGGTGCTGTCCTCTTT---GGAGGAGTCAATTGGACTAATGAAAACTTTCCCTTT 1462
||||| |||||| || ||| || | | || ||||||||||| |||||||| ||
Sbjct 676220 GCCCA---TGCTGTGCTATTTTATGGCTGTGGAAACTGGACTAATGAGAACTTTCCTTTC 676276
Query 1463 TGTAATTGTCCTGGTAAACTGTTGATATGGTGGGAAGAGGGTAAAATGACACAAAAGATG 1522
|| | || | ||| || ||| |||||||| || || || | ||| || ||
Sbjct 676277 AGTGACTGGGTAGATAAGATGGCGATTTGGTGGGAGGAAGGAAAGACGACTAGTAAAATC 676336
Query 1523 GTCGAAACCGCCAAATGTATATTAGGCGGTGCTGTTGTAC-CTGTGGATATCAAAGGCAA 1581
|| || | || ||| || || || || | | || | || ||| ||| | ||
Sbjct 676337 GTAGAGTCTGCTAAAGCCATTTTGGGTGGGTCGGCCGTGCGGGGTTGATCAAAAATGTAA 676396
Query 1582 AATGGCTGAACTGTGTGAAACCACCCCTGTCATTATTACCAGTAATACCAACATGTGTCA 1641
| ||| | |||| | || ||||| ||||||||||||||| | | ||||
Sbjct 676397 AGGTTCTGTGCAAATTGAACCAACGCCTGTACTTATTACCAGTAATATATATAAGTGTAC 676456
Query 1642 GGTCTTTGATGGTAACAGTAGCAGTTTTGAACATACCGAACCCTTAGAAGAAAGAATGTT 1701
|| ||||||| ||||| | | || ||||||| || || || || |||||||||||
Sbjct 676457 TGTGGTTGATGGGAACAGCACTACCTTGGAACATAAGGAGCCTTTGGAGGAAAGAATGTT 676516
Query 1702 TATGTTTAGGTT 1713
| ||||||||
Sbjct 676517 CCTTTTTAGGTT 676528
Score = 82.4 bits (90), Expect = 2e-12
Identities = 306/474 (65%), Gaps = 18/474 (4%)
Strand=Plus/Plus
Query 2729 CCTCGGGAGATTGGCATTGCGATACCCAATGGCTGGGCGACCACGTCATTACAAAATCTA 2788
|||| ||| |||||||| | ||| ||||||| || | | ||||| || || |
Sbjct 677822 CCTCAGGAAATTGGCAT-GTGATTGTCAATGGCAAGGGAATCTCGTCACCACTTGTTCCA 677880
Query 2789 CCAGAACTTGGGTTCTGCCCTCTTACGGGAATCATCTCTACTCGCCCATCAACTTTGATG 2848
||||||||||||| || ||||| || | || |||||||| || || || |||
Sbjct 677881 CCAGAACTTGGGTGCTCCCCTCCTATGACAACAATCTCTACAAGCAGATTAAAGGCCATG 677940
Query 2849 GAACCACAGGGAACGGAACCCAAG-CCGCTTACTGCGGATACGCTACCCCCTGGGCCTAC 2907
|| || || | |||| |||| || ||| ||||| |||||||||
Sbjct 677941 CCTCC----------GA---CATGTCCGCCTACTTGGGTTACAGCACCCC-TGGGCCTAC 677986
Query 2908 TTTGACTTTAACCGATTCCACTGCCACTTTTCCCCCCGAGACTGGCAAAGACTCATTAAC 2967
| |||| || ||||||| ||||||| ||||||||||| || | ||||| |||
Sbjct 677987 CTCAACTTCAAGAGATTCCAGTGCCACTGGAGTCCCCGAGACTGTCAGCGGCTCATCAAC 678046
Query 2968 AACCATACCGGAATACGACCAGTCGGACTCAAATTCAAGCTGTTCAACATCCAGGTCAAG 3027
||| | || || |||||| | | | |||| | |||||||| || || |||
Sbjct 678047 AACTACTGGGGCATCCGACCAAAAGCTTGTAGAATCAAAATTTTCAACATACAAGTTAAG 678106
Query 3028 GAAATCACAGTACAAGATTCGACCAAAACGATCGCCAACAATCTCACCAGCACCGTACAG 3087
|| ||| | || | || || || ||||| || || || ||| | |||
Sbjct 678107 GAGGTCATGGAGGCAGCGGGCATAAAGACAATTGCCAATAACCTAACGTCAACCATCCAG 678166
Query 3088 GTCTTTGCGGA-CACGGAGCACCAGCTCCCGTACGTATTAGGAAATGCCACGCAGGGCAC 3146
| ||||| || || | ||||||| || || || | ||||||||||| ||||
Sbjct 678167 ATTTTTGCAGATGACACA-TACCAGCTGCCATATGTGATTGGAAATGCCACCGAGGGGTG 678225
Query 3147 GTTTCCTCCCTTTCCGGCTGAAGTCTTTCAGTTGCCTCAGTACGGCTACTGTAC 3200
| || | ||||| | ||| || ||| | ||||||||||| | | ||| ||
Sbjct 678226 CTCACCCGCTTTTCCCGGTGATGTTTTTATGCTGCCTCAGTACTGGTGCTGCAC 678279
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 14574132973825
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |