Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteronotus_20parnellii_20[genbank_20GCA_5F000465405.1_202013-09-13] 177,401 sequences; 1,960,317,893 total letters Query= NC_001401.2 Length=4679 Score E Sequences producing significant alignments: (Bits) Value seq91248 131 5e-27 seq65713 120 9e-24 >seq91248 Length=32913 Score = 131 bits (144), Expect = 5e-27 Identities = 129/164 (79%), Gaps = 2/164 (1%) Strand=Plus/Plus Query 1302 AACACCATCTGGCTGTTTGGGCCTGCAACTACCGGGAAGACCAACATCGCGGAGGCCATA 1361 |||||||| ||| | | || |||||||| || ||||||||||||||||| ||||| || Sbjct 7997 AACACCATATGGTTCTACGGACCTGCAACCACAGGGAAGACCAACATCGCAGAGGCTATT 8056 Query 1362 GCCCACACTGTGCCCTTCTACGGGTGCGTAAACTGGACCAATGAGAACTTTCCCTTCAAC 1421 ||||| ||| || ||||| | || || | |||||| ||||| |||||| |||| || Sbjct 8057 GCCCATGCTGGGCTTTTCTATAGCTGTGTTAGCTGGACTAATGA-AACTTT-CCTTTAAT 8114 Query 1422 GACTGTGTCGACAAGATGGTGATCTGGTGGGAGGAGGGGAAGAT 1465 |||||||| ||||| ||||| || |||| || |||||| | ||| Sbjct 8115 GACTGTGTGGACAAAATGGTAATTTGGTAGGTGGAGGGTACGAT 8158 >seq65713 Length=16701 Score = 120 bits (132), Expect = 9e-24 Identities = 238/350 (68%), Gaps = 12/350 (3%) Strand=Plus/Minus Query 2860 GGAGTGGGTAATTCCTCGGGAAATTGGCATTGCGATTCCACATGGATGGGCGACAGAGTC 2919 ||||||||| | ||| |||||||||||||| |||| |||| ||| | | || Sbjct 2757 GGAGTGGGTTAGATCTCAGGAAATTGGCATTGTAATTCACAATGGCAAGGCAATATGGTT 2698 Query 2920 ATCACCACCAGCACCCGAACCTGGGCCCTGCCCACCTACAACAACCACCTCTACAAACAA 2979 | ||||| ||| | |||||| ||||| |||| ||||||| | ||||||||| Sbjct 2697 ACCACCAAGTCAACCACAGCCTGGGTACTGCCTTCCTATGACAACCATTTATACAAACAA 2638 Query 2980 ATTTCCAGCCAATCAGGAGCCTCGAACGACA-ATCA--CTACTTTGGCTACAGCACCCCT 3036 || ||| ||||| || | |||| ||| |||| |||| || ||||| || Sbjct 2637 AT-------CAA--AGGAGAATCCACAGACATGTCAGTCTACCTTGGATATAGCACTCCA 2587 Query 3037 TGGGGGTATTTTGACTTCAACAGATTCCACTGCCACTTTTCACCACGTGACTGGCAAAGA 3096 |||| ||| |||||||||| |||||||| || |||| | | ||||||||| | Sbjct 2586 TGGGCCTATCTTGACTTCAATAGATTCCAATGTCACTGAAGCTCCTGAGACTGGCAATGC 2527 Query 3097 CTCATCAACAACAACTGGGGATTCCGACCCAAGAGACTCAACTTCAAGCTCTTTAACATT 3156 |||||| ||| ||| |||| ||||| || || || |||| | || ||||| Sbjct 2526 CTCATCGGCAATTACTAGGGACCACGACCAAAAAGCTGCAGAATCAAAATATTCAACATC 2467 Query 3157 CAAGTCAAAGAGGTCACGCAGAATGACGGTACGACGACGATTGCCAATAA 3206 ||||| || |||||| | ||| | | |||| || |||||||| || Sbjct 2466 CAAGTTAAGGAGGTCGCAGAGACAGCAAGCACGAAAACAATTGCCAACAA 2417 Score = 78.8 bits (86), Expect = 3e-11 Identities = 121/174 (70%), Gaps = 8/174 (5%) Strand=Plus/Minus Query 1295 CAAGAGGAACACCATCTGGCTGTTTGGGCCTGCAACTACCGGGAAGACCAACATCGCGGA 1354 ||| || |||||||| ||| | | | |||| | || ||||||||||||||| | || Sbjct 4391 CAAAAGAAACACCATGTGGTTCCACAGACATGCAGCCACTGGGAAGACCAACATCACAGA 4332 Query 1355 GGCCATAGCCCACACTGTGCCCTTCTACGGGTGCGTAAACTGGACCAATGAGAACTTTCC 1414 ||| || ||||| ||||| || ||| ||| | || |||| |||||||| Sbjct 4331 GGCTATTGCCCATGCTGTG--------TGGCTGCATAACCCAGAGTAATGGAAACTTTCC 4280 Query 1415 CTTCAACGACTGTGTCGACAAGATGGTGATCTGGTGGGAGGAGGGGAAGATGAC 1468 || || |||| | || || ||| | || |||| ||||||||| || ||||| Sbjct 4279 TTTTAATGACTATAGGGATAAAATGATTATTTGGTAGGAGGAGGGTAAAATGAC 4226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14831965241460