Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pteronotus_20parnellii_20[genbank_20GCA_5F000465405.1_202013-09-13]
177,401 sequences; 1,960,317,893 total letters
Query= NC_001401.2
Length=4679
Score E
Sequences producing significant alignments: (Bits) Value
seq91248 131 5e-27
seq65713 120 9e-24
>seq91248
Length=32913
Score = 131 bits (144), Expect = 5e-27
Identities = 129/164 (79%), Gaps = 2/164 (1%)
Strand=Plus/Plus
Query 1302 AACACCATCTGGCTGTTTGGGCCTGCAACTACCGGGAAGACCAACATCGCGGAGGCCATA 1361
|||||||| ||| | | || |||||||| || ||||||||||||||||| ||||| ||
Sbjct 7997 AACACCATATGGTTCTACGGACCTGCAACCACAGGGAAGACCAACATCGCAGAGGCTATT 8056
Query 1362 GCCCACACTGTGCCCTTCTACGGGTGCGTAAACTGGACCAATGAGAACTTTCCCTTCAAC 1421
||||| ||| || ||||| | || || | |||||| ||||| |||||| |||| ||
Sbjct 8057 GCCCATGCTGGGCTTTTCTATAGCTGTGTTAGCTGGACTAATGA-AACTTT-CCTTTAAT 8114
Query 1422 GACTGTGTCGACAAGATGGTGATCTGGTGGGAGGAGGGGAAGAT 1465
|||||||| ||||| ||||| || |||| || |||||| | |||
Sbjct 8115 GACTGTGTGGACAAAATGGTAATTTGGTAGGTGGAGGGTACGAT 8158
>seq65713
Length=16701
Score = 120 bits (132), Expect = 9e-24
Identities = 238/350 (68%), Gaps = 12/350 (3%)
Strand=Plus/Minus
Query 2860 GGAGTGGGTAATTCCTCGGGAAATTGGCATTGCGATTCCACATGGATGGGCGACAGAGTC 2919
||||||||| | ||| |||||||||||||| |||| |||| ||| | | ||
Sbjct 2757 GGAGTGGGTTAGATCTCAGGAAATTGGCATTGTAATTCACAATGGCAAGGCAATATGGTT 2698
Query 2920 ATCACCACCAGCACCCGAACCTGGGCCCTGCCCACCTACAACAACCACCTCTACAAACAA 2979
| ||||| ||| | |||||| ||||| |||| ||||||| | |||||||||
Sbjct 2697 ACCACCAAGTCAACCACAGCCTGGGTACTGCCTTCCTATGACAACCATTTATACAAACAA 2638
Query 2980 ATTTCCAGCCAATCAGGAGCCTCGAACGACA-ATCA--CTACTTTGGCTACAGCACCCCT 3036
|| ||| ||||| || | |||| ||| |||| |||| || ||||| ||
Sbjct 2637 AT-------CAA--AGGAGAATCCACAGACATGTCAGTCTACCTTGGATATAGCACTCCA 2587
Query 3037 TGGGGGTATTTTGACTTCAACAGATTCCACTGCCACTTTTCACCACGTGACTGGCAAAGA 3096
|||| ||| |||||||||| |||||||| || |||| | | ||||||||| |
Sbjct 2586 TGGGCCTATCTTGACTTCAATAGATTCCAATGTCACTGAAGCTCCTGAGACTGGCAATGC 2527
Query 3097 CTCATCAACAACAACTGGGGATTCCGACCCAAGAGACTCAACTTCAAGCTCTTTAACATT 3156
|||||| ||| ||| |||| ||||| || || || |||| | || |||||
Sbjct 2526 CTCATCGGCAATTACTAGGGACCACGACCAAAAAGCTGCAGAATCAAAATATTCAACATC 2467
Query 3157 CAAGTCAAAGAGGTCACGCAGAATGACGGTACGACGACGATTGCCAATAA 3206
||||| || |||||| | ||| | | |||| || |||||||| ||
Sbjct 2466 CAAGTTAAGGAGGTCGCAGAGACAGCAAGCACGAAAACAATTGCCAACAA 2417
Score = 78.8 bits (86), Expect = 3e-11
Identities = 121/174 (70%), Gaps = 8/174 (5%)
Strand=Plus/Minus
Query 1295 CAAGAGGAACACCATCTGGCTGTTTGGGCCTGCAACTACCGGGAAGACCAACATCGCGGA 1354
||| || |||||||| ||| | | | |||| | || ||||||||||||||| | ||
Sbjct 4391 CAAAAGAAACACCATGTGGTTCCACAGACATGCAGCCACTGGGAAGACCAACATCACAGA 4332
Query 1355 GGCCATAGCCCACACTGTGCCCTTCTACGGGTGCGTAAACTGGACCAATGAGAACTTTCC 1414
||| || ||||| ||||| || ||| ||| | || |||| ||||||||
Sbjct 4331 GGCTATTGCCCATGCTGTG--------TGGCTGCATAACCCAGAGTAATGGAAACTTTCC 4280
Query 1415 CTTCAACGACTGTGTCGACAAGATGGTGATCTGGTGGGAGGAGGGGAAGATGAC 1468
|| || |||| | || || ||| | || |||| ||||||||| || |||||
Sbjct 4279 TTTTAATGACTATAGGGATAAAATGATTATTTGGTAGGAGGAGGGTAAAATGAC 4226
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 14831965241460
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |