Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteronotus_20parnellii_20[genbank_20GCA_5F000465405.1_202013-09-13] 177,401 sequences; 1,960,317,893 total letters Query= NC_004828.1 Length=4694 Score E Sequences producing significant alignments: (Bits) Value seq65713 143 8e-31 seq91248 138 3e-29 >seq65713 Length=16701 Score = 143 bits (158), Expect = 8e-31 Identities = 232/335 (69%), Gaps = 8/335 (2%) Strand=Plus/Minus Query 1223 GAAACACGCTGTGGCTGTTCGGACATGCGACCACCGGCAAGACCAACATCGCGGAGGCTA 1282 ||||||| ||||| | | ||||||| |||| || |||||||||||| | ||||||| Sbjct 4386 GAAACACCATGTGGTTCCACAGACATGCAGCCACTGGGAAGACCAACATCACAGAGGCTA 4327 Query 1283 TTGCCCATGCTGTGCCGTTCTATGGATGCGTTAACTGGACCAACGAGAACTTTCCGTTCA 1342 |||||||||||||| ||| ||| | | | || || | |||||||| || | Sbjct 4326 TTGCCCATGCTGTG--------TGGCTGCATAACCCAGAGTAATGGAAACTTTCCTTTTA 4275 Query 1343 ACGACTGCGTCGAAAAAATGATTATCTGGTGGGAGGAGGGCAAAATGACCGCCAAAGTGG 1402 | |||| || ||||||||||| |||| ||||||||| |||||||| | || | Sbjct 4274 ATGACTATAGGGATAAAATGATTATTTGGTAGGAGGAGGGTAAAATGACTAATGATGTTG 4215 Query 1403 TGGAAACAGCCAAGGCGATTCTGGGAGGATCTCGGGTGAGAGTGGACCAAAAATGCAAAG 1462 || | | || ||||| || |||| | |||| | || || || || |||| ||| Sbjct 4214 TGAAGTCTGCAAAGGCTCTTTTGGGGGAATCTGCCATAAGGGTTGATCAGGAATGTAAAT 4155 Query 1463 CTTCGGTTCCGATCGAACCGACGCCGGTCATTATTACCAGTAACACCAACATGTGTTATG 1522 | || | | ||||| || || || |||||||||||||||| | ||||| || Sbjct 4154 GGCCTGTACAAACTGAACCCACTCCTGTGATTATTACCAGTAACATTGATATGTGGATTG 4095 Query 1523 TCATCGACGGGAACACGACCACGTTCGAGCATAAG 1557 | | || ||||||| || || || || |||||| Sbjct 4094 TAGTGGATGGGAACAGTACAACTTTTGAACATAAG 4060 >seq91248 Length=32913 Score = 138 bits (152), Expect = 3e-29 Identities = 131/165 (79%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 1218 CAAGCGAAACACGCTGTGGCTGTTCGGACATGCGACCACCGGCAAGACCAACATCGCGGA 1277 ||| | |||||| | ||| | | ||||| ||| ||||| || |||||||||||||| || Sbjct 7990 CAAACAAAACACCATATGGTTCTACGGACCTGCAACCACAGGGAAGACCAACATCGCAGA 8049 Query 1278 GGCTATTGCCCATGCTGTGCCGTTCTATGGATGCGTTAACTGGACCAACGAGAACTTTCC 1337 ||||||||||||||||| || |||||| | || |||| |||||| || || |||||||| Sbjct 8050 GGCTATTGCCCATGCTGGGCTTTTCTATAGCTGTGTTAGCTGGACTAATGA-AACTTTCC 8108 Query 1338 GTTCAACGACTGCGTCGAAAAAATGATTATCTGGTGGGAGGAGGG 1382 || || ||||| || || |||||| | || |||| || |||||| Sbjct 8109 -TTTAATGACTGTGTGGACAAAATGGTAATTTGGTAGGTGGAGGG 8152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14879872105935