Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteronotus_20parnellii_20[genbank_20GCA_5F000465405.1_202013-09-13] 177,401 sequences; 1,960,317,893 total letters Query= NC_005889.1 Length=4693 Score E Sequences producing significant alignments: (Bits) Value seq65713 91.5 4e-15 seq91248 89.7 2e-14 >seq65713 Length=16701 Score = 91.5 bits (100), Expect = 4e-15 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 1466 GAAAAAATGTTGATCTGGTGGGAGGAGGGAAAGATGACCAGCAAGGTGGTGGAACCCGCC 1525 || |||||| | || |||| ||||||||| || ||||| | | || ||| | | || Sbjct 4263 GATAAAATGATTATTTGGTAGGAGGAGGGTAAAATGACTAATGATGTTGTGAAGTCTGCA 4204 Query 1526 AAGGCCATCTTgggggggTCTAGAGTACGAGTGGATCAAAAATGTAAATCCTCTGTACAA 1585 ||||| | ||||||| ||| || | || ||||| ||||||||| |||||||| Sbjct 4203 AAGGCTCTTTTGGGGGAATCTGCCATAAGGGTTGATCAGGAATGTAAATGGCCTGTACAA 4144 Query 1586 GTAGACTCTACCCCGGTGATTATCACCTCCAATACTAACATGTGTGTGGTGGTGGATGGG 1645 || | || || |||||||| ||| || | | | ||||| | || ||||||||| Sbjct 4143 ACTGAACCCACTCCTGTGATTATTACCAGTAACATTGATATGTGGATTGTAGTGGATGGG 4084 Query 1646 AACTCCACGACCTTTGAACA 1665 ||| || || |||||||| Sbjct 4083 AACAGTACAACTTTTGAACA 4064 Score = 80.6 bits (88), Expect = 8e-12 Identities = 105/143 (73%), Gaps = 2/143 (1%) Strand=Plus/Minus Query 3022 CACCCCCTGGGGATACTTTGACTTTAACCGCTTCCACTGCCACTTCTCGCCAAGAGACTG 3081 ||| || |||| || ||||||| || | ||||| || |||| | ||||||| Sbjct 2593 CACTCCATGGGCCTATCTTGACTTCAATAGATTCCAATGTCACTGAAGCTCCTGAGACTG 2534 Query 3082 GCAAAGGCTCATCAACAACCACTGGGGACTGCGCCCCAAAAGCATGCA-AGTCCGCATCT 3140 |||| | |||||| ||| ||| ||||| || || |||||| |||| | || || | Sbjct 2533 GCAATGCCTCATCGGCAATTACTAGGGACCACGACCAAAAAGC-TGCAGAATCAAAATAT 2475 Query 3141 TCAACATCCAAGTTAAGGAGGTC 3163 ||||||||||||||||||||||| Sbjct 2474 TCAACATCCAAGTTAAGGAGGTC 2452 >seq91248 Length=32913 Score = 89.7 bits (98), Expect = 2e-14 Identities = 232/357 (65%), Gaps = 12/357 (3%) Strand=Plus/Plus Query 1337 AACACCGTCTGGCTGTATGGACCCGCGACCACCGGAAAGACCAACATCGCGGAAGCCATC 1396 |||||| | ||| | || ||||| || ||||| || |||||||||||||| || || || Sbjct 7997 AACACCATATGGTTCTACGGACCTGCAACCACAGGGAAGACCAACATCGCAGAGGCTATT 8056 Query 1397 TCTCACACCGTGCCCTTTTATGGCTGTGTGAACTGGACTAATGAGAACTTNNNNNNNNNN 1456 | || | | || || ||| ||||||| | |||||||||||| ||||| Sbjct 8057 GCCCATGCTGGGCTTTTCTATAGCTGTGTTAGCTGGACTAATGA-AACTT-TCCTTTAAT 8114 Query 1457 NNNNNNNNNGAAAAAATGTTGATCTGGTGGGAGGAGGGAAAGATGACCAGCAAGGTGGTG 1516 || |||||| | || |||| || |||||| | ||| | || || ||| Sbjct 8115 GACTGTGTGGACAAAATGGTAATTTGGTAGGTGGAGGGTACGATAGTTAATAAAGTTGTG 8174 Query 1517 GAACCCGCCAAGGCCATCTTggggg-ggTCTAGAGT---------ACGAGTGGATCAAAA 1566 ||| | | || |||| |||||| || | | || | || ||||||| Sbjct 8175 GAATCTGTTAAAGCCAAAATGGGGGTGGGGTGGGGTGGTCAGCCATCCAGGTTATCAAAA 8234 Query 1567 ATGTAAATCCTCTGTACAAGTAGACTCTACCCCGGTGATTATCACCTCCAATACTAACAT 1626 ||||||| ||||||||| |||| | || || || || || || || ||| | Sbjct 8235 ATGTAAAGTATCTGTACAAATAGAACCCACGCCTGTAATCATAACAAATAAAACTGGTGT 8294 Query 1627 GTGTGTGGTGGTGGATGGGAACTCCACGACCTTTGAACACCAGCAGCCGCTGGAAGA 1683 | || | || || ||||| |||| | | || ||||| ||| || |||| || || || Sbjct 8295 GAGTTTAGTAGTAGATGGCAACTGCCCAACTTTTGAGCACAAGGAGCCTCTCGAGGA 8351 Score = 86.0 bits (94), Expect = 2e-13 Identities = 167/244 (68%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 2342 GGTCTTGTGCTTCCTGGGTACAAGTATCTTGGTCCTGGGAACGGCCTTGATAAGGGCGAT 2401 || ||||| || ||||| || ||||| || ||||| || |||||||||||| || || Sbjct 9158 GGCCTTGTCCTCCCTGGCTATAAGTACCTGAGTCCTTTTAATGGCCTTGATAAGAGCAAT 9217 Query 2402 CCTGTCAATTTTGCTGACGAGGTTGCCCGAGAGCACGACCTCTCCTACCAGAAACAGCTT 2461 || |||||| || ||| ||| ||| ||| || ||| || | || | |||| ||| Sbjct 9218 CCGGTCAATAAAGCAGACAAGGCAGCCAGAGCTCATGACATCACATATGACAAAC-TCTT 9276 Query 2462 G-AGGCGGGCGATAACCCTTACCTCAAGTACAACCACGCGGACGCAGAGTTTCAGGAGAA 2520 | | | || | ||||||||||| | | ||| || || ||| |||||||| || | Sbjct 9277 GAAAGAAGGTAAAAACCCTTACCTAACTTTCAATCAAGCAGACCAAGAGTTTCTAGACAC 9336 Query 2521 ACTCGCTTCTGACACTTCTTTTGGGGGAAACCTTGGGAAGGCTGTTTTCCAGGCTAAAAA 2580 || ||| || || |||||||| || | | | | ||||||||||| || || Sbjct 9337 TCTAAAGGATGATACGTCCTTTGGGGGCAAATTAGCTCATGGTGTTTTCCAGGACAATAA 9396 Query 2581 GAGG 2584 | || Sbjct 9397 GTGG 9400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14876678314970