Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pteronotus_20parnellii_20[genbank_20GCA_5F000465405.1_202013-09-13]
177,401 sequences; 1,960,317,893 total letters
Query= NC_005889.1
Length=4693
Score E
Sequences producing significant alignments: (Bits) Value
seq65713 91.5 4e-15
seq91248 89.7 2e-14
>seq65713
Length=16701
Score = 91.5 bits (100), Expect = 4e-15
Identities = 140/200 (70%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 1466 GAAAAAATGTTGATCTGGTGGGAGGAGGGAAAGATGACCAGCAAGGTGGTGGAACCCGCC 1525
|| |||||| | || |||| ||||||||| || ||||| | | || ||| | | ||
Sbjct 4263 GATAAAATGATTATTTGGTAGGAGGAGGGTAAAATGACTAATGATGTTGTGAAGTCTGCA 4204
Query 1526 AAGGCCATCTTgggggggTCTAGAGTACGAGTGGATCAAAAATGTAAATCCTCTGTACAA 1585
||||| | ||||||| ||| || | || ||||| ||||||||| ||||||||
Sbjct 4203 AAGGCTCTTTTGGGGGAATCTGCCATAAGGGTTGATCAGGAATGTAAATGGCCTGTACAA 4144
Query 1586 GTAGACTCTACCCCGGTGATTATCACCTCCAATACTAACATGTGTGTGGTGGTGGATGGG 1645
|| | || || |||||||| ||| || | | | ||||| | || |||||||||
Sbjct 4143 ACTGAACCCACTCCTGTGATTATTACCAGTAACATTGATATGTGGATTGTAGTGGATGGG 4084
Query 1646 AACTCCACGACCTTTGAACA 1665
||| || || ||||||||
Sbjct 4083 AACAGTACAACTTTTGAACA 4064
Score = 80.6 bits (88), Expect = 8e-12
Identities = 105/143 (73%), Gaps = 2/143 (1%)
Strand=Plus/Minus
Query 3022 CACCCCCTGGGGATACTTTGACTTTAACCGCTTCCACTGCCACTTCTCGCCAAGAGACTG 3081
||| || |||| || ||||||| || | ||||| || |||| | |||||||
Sbjct 2593 CACTCCATGGGCCTATCTTGACTTCAATAGATTCCAATGTCACTGAAGCTCCTGAGACTG 2534
Query 3082 GCAAAGGCTCATCAACAACCACTGGGGACTGCGCCCCAAAAGCATGCA-AGTCCGCATCT 3140
|||| | |||||| ||| ||| ||||| || || |||||| |||| | || || |
Sbjct 2533 GCAATGCCTCATCGGCAATTACTAGGGACCACGACCAAAAAGC-TGCAGAATCAAAATAT 2475
Query 3141 TCAACATCCAAGTTAAGGAGGTC 3163
|||||||||||||||||||||||
Sbjct 2474 TCAACATCCAAGTTAAGGAGGTC 2452
>seq91248
Length=32913
Score = 89.7 bits (98), Expect = 2e-14
Identities = 232/357 (65%), Gaps = 12/357 (3%)
Strand=Plus/Plus
Query 1337 AACACCGTCTGGCTGTATGGACCCGCGACCACCGGAAAGACCAACATCGCGGAAGCCATC 1396
|||||| | ||| | || ||||| || ||||| || |||||||||||||| || || ||
Sbjct 7997 AACACCATATGGTTCTACGGACCTGCAACCACAGGGAAGACCAACATCGCAGAGGCTATT 8056
Query 1397 TCTCACACCGTGCCCTTTTATGGCTGTGTGAACTGGACTAATGAGAACTTNNNNNNNNNN 1456
| || | | || || ||| ||||||| | |||||||||||| |||||
Sbjct 8057 GCCCATGCTGGGCTTTTCTATAGCTGTGTTAGCTGGACTAATGA-AACTT-TCCTTTAAT 8114
Query 1457 NNNNNNNNNGAAAAAATGTTGATCTGGTGGGAGGAGGGAAAGATGACCAGCAAGGTGGTG 1516
|| |||||| | || |||| || |||||| | ||| | || || |||
Sbjct 8115 GACTGTGTGGACAAAATGGTAATTTGGTAGGTGGAGGGTACGATAGTTAATAAAGTTGTG 8174
Query 1517 GAACCCGCCAAGGCCATCTTggggg-ggTCTAGAGT---------ACGAGTGGATCAAAA 1566
||| | | || |||| |||||| || | | || | || |||||||
Sbjct 8175 GAATCTGTTAAAGCCAAAATGGGGGTGGGGTGGGGTGGTCAGCCATCCAGGTTATCAAAA 8234
Query 1567 ATGTAAATCCTCTGTACAAGTAGACTCTACCCCGGTGATTATCACCTCCAATACTAACAT 1626
||||||| ||||||||| |||| | || || || || || || || ||| |
Sbjct 8235 ATGTAAAGTATCTGTACAAATAGAACCCACGCCTGTAATCATAACAAATAAAACTGGTGT 8294
Query 1627 GTGTGTGGTGGTGGATGGGAACTCCACGACCTTTGAACACCAGCAGCCGCTGGAAGA 1683
| || | || || ||||| |||| | | || ||||| ||| || |||| || || ||
Sbjct 8295 GAGTTTAGTAGTAGATGGCAACTGCCCAACTTTTGAGCACAAGGAGCCTCTCGAGGA 8351
Score = 86.0 bits (94), Expect = 2e-13
Identities = 167/244 (68%), Gaps = 2/244 (1%)
Strand=Plus/Plus
Query 2342 GGTCTTGTGCTTCCTGGGTACAAGTATCTTGGTCCTGGGAACGGCCTTGATAAGGGCGAT 2401
|| ||||| || ||||| || ||||| || ||||| || |||||||||||| || ||
Sbjct 9158 GGCCTTGTCCTCCCTGGCTATAAGTACCTGAGTCCTTTTAATGGCCTTGATAAGAGCAAT 9217
Query 2402 CCTGTCAATTTTGCTGACGAGGTTGCCCGAGAGCACGACCTCTCCTACCAGAAACAGCTT 2461
|| |||||| || ||| ||| ||| ||| || ||| || | || | |||| |||
Sbjct 9218 CCGGTCAATAAAGCAGACAAGGCAGCCAGAGCTCATGACATCACATATGACAAAC-TCTT 9276
Query 2462 G-AGGCGGGCGATAACCCTTACCTCAAGTACAACCACGCGGACGCAGAGTTTCAGGAGAA 2520
| | | || | ||||||||||| | | ||| || || ||| |||||||| || |
Sbjct 9277 GAAAGAAGGTAAAAACCCTTACCTAACTTTCAATCAAGCAGACCAAGAGTTTCTAGACAC 9336
Query 2521 ACTCGCTTCTGACACTTCTTTTGGGGGAAACCTTGGGAAGGCTGTTTTCCAGGCTAAAAA 2580
|| ||| || || |||||||| || | | | | ||||||||||| || ||
Sbjct 9337 TCTAAAGGATGATACGTCCTTTGGGGGCAAATTAGCTCATGGTGTTTTCCAGGACAATAA 9396
Query 2581 GAGG 2584
| ||
Sbjct 9397 GTGG 9400
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 14876678314970
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |