Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteronotus_20parnellii_20[genbank_20GCA_5F000465405.1_202013-09-13] 177,401 sequences; 1,960,317,893 total letters Query= NC_006148.1 Length=4432 Score E Sequences producing significant alignments: (Bits) Value seq65713 111 4e-21 seq140625 98.7 3e-17 >seq65713 Length=16701 Score = 111 bits (122), Expect = 4e-21 Identities = 305/460 (66%), Gaps = 13/460 (3%) Strand=Plus/Minus Query 2819 GGATACAAGACTCCCTGGGGGTACTTTGACTTCAATCGATTCCATTGCCACTTCTCCCCC 2878 ||||| | ||||| |||| || ||||||||||| ||||||| || |||| | || Sbjct 2601 GGATATAGCACTCCATGGGCCTATCTTGACTTCAATAGATTCCAATGTCACTGAAGCTCC 2542 Query 2879 CGAGACTGGCAAAGACTCATCAACAACCACACAGGCATCA-GGCCGAAAGGACTCAAAAT 2937 ||||||||||| | |||||| ||| || ||| | || | || ||| | || ||| Sbjct 2541 TGAGACTGGCAATGCCTCATCGGCAATTAC-TAGGGACCACGACCAAAAAGCTGCAGAAT 2483 Query 2938 CAAAGTCTTTAACGTCCAAGTCAAAGAAGTTACA-ACACAAGATTCAACGAAAACAATTG 2996 |||| | || ||| ||||||| || || || || | ||| | | ||||||||||||| Sbjct 2482 CAAAATATTCAACATCCAAGTTAAGGAGGTCGCAGAGACAGCAAGC-ACGAAAACAATTG 2424 Query 2997 CCAACAATCTCACCAGCACCGTACAGATCTTTGCGGACGAGAACTACGACTTACCATATG 3056 |||||||| | | ||| | |||| ||| | || || | || | | || |||| Sbjct 2423 CCAACAATTTAGCATCCACAATCTAGATATTTTCAGATGACACATATCAACTGCCTTATG 2364 Query 3057 TATTAGGCAGTGCTACACAAGGCACATTTCCTCCATTTCCCAATGATGTATTTATGTTAC 3116 | | || | || |||| |||| || || ||||| ||||| |||||| | | Sbjct 2363 TCATTGGTAATGTTACAGAAGGATGCTTGCCAAACTTTCCAGGCGATGTCTTTATGCTTC 2304 Query 3117 CACAATATGCTTATTGTACACTTCAAGGAAATTCGGGGA-----AATTTG--TA--GATA 3167 | ||||||| | | | || ||||| | | || || | | || || | || Sbjct 2303 CTCAATATGAGTGTAGCACTCTTCATGCTCACTCAGGAACCACCACGGTGCCTACTGCTA 2244 Query 3168 GAAGTGCCTTTTATTGTTTAGAATATTTTCCTTCACAAATGCTGAGAACAGGAAACAATT 3227 || ||| ||||| ||| | |||||||| || |||||| | ||||| |||| | Sbjct 2243 GATCTGCTTTTTACTGTCTGGAATATTTGCCCAGTCAAATGGTTCACACAGGCAACAGCT 2184 Query 3228 TTGAGTTCCAGTTTAAATTTGAAGAAGTTCCCTTTCATTC 3267 || || ||| ||| |||||| | | || |||||||| Sbjct 2183 TTACTTTTCAGCATAACTTTGAAAATTTGCCATTTCATTC 2144 >seq140625 Length=13988 Score = 98.7 bits (108), Expect = 3e-17 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 3818 GACATTTACTTACAGGGGCCTATTTGGGCTAAAATTCCAAATACAGATGGACATTTTCAT 3877 || || ||| | || || | |||||||||||||||||| | | ||||| |||||| Sbjct 9150 GATATGTACCTCCAAGGCCTTATTTGGGCTAAAATTCCTCACAAAGATGAGGCTTTTCAC 9209 Query 3878 CCTTCTCCCAGAATGGGTGGTTTTGGATTAAAACATCCTCCGCCTATGATTCTGATCAAA 3937 ||| | |||| || ||||||||||| | || || | | | || | ||| | ||| Sbjct 9210 CCTGCCCCCAACATCATTGGTTTTGGATACAGACGGCCGCTGGCCATAACTCTTTTGAAA 9269 Query 3938 AATACACCAGTTCCTGCTGATCCTCCAACTACCTTCAATCCA-ATGCCACAGACTAGTTT 3996 || ||||||||||| || || ||||| || ||||| || | | |||| | | ||| Sbjct 9270 AACACACCAGTTCCAGCAGAACCTCCTACCACCTTTAAAGAAGAAGCCATTAAATCTTTT 9329 Query 3997 CATTACTGAATACAGTACAGGACAAGTAACTGTTGAAATGTTGTGGGA 4044 ||||| ||||| ||||| ||||| || || ||||| |||||| Sbjct 9330 ATTTACT-AATACTCCACAGGTCAAGTTACAGTAGAAATTGAGTGGGA 9376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14043098873105