Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteronotus_20parnellii_20[genbank_20GCA_5F000465405.1_202013-09-13] 177,401 sequences; 1,960,317,893 total letters Query= NC_006152.1 Length=4642 Score E Sequences producing significant alignments: (Bits) Value seq91248 176 1e-40 seq65713 145 2e-31 >seq91248 Length=32913 Score = 176 bits (194), Expect = 1e-40 Identities = 266/374 (71%), Gaps = 22/374 (6%) Strand=Plus/Plus Query 1316 TTCAACAAGAGGAACACCGTCTGGCTCTACGGACCCGCCACGACCGGCAAGACCAACATC 1375 |||||||| |||||| | ||| |||||||||| || || || || |||||||||||| Sbjct 7985 TTCAACAAACAAAACACCATATGGTTCTACGGACCTGCAACCACAGGGAAGACCAACATC 8044 Query 1376 GCGGAGGCCATCGCCCACACTGTGCCCTTTTACGGCTGCGTGAACTGGACCAATGAAAAC 1435 || ||||| || ||||| ||| || || || |||| || | |||||| |||| |||| Sbjct 8045 GCAGAGGCTATTGCCCATGCTGGGCTTTTCTATAGCTGTGTTAGCTGGACTAATG-AAAC 8103 Query 1436 TTTCCCTTTAATGACTGTGTGGACAAAATGCTCATTTGGTGGGAGGAGGGAAAGATGACC 1495 ||| |||||||||||||||||||||||||| | ||||||| || |||||| | ||| Sbjct 8104 TTT-CCTTTAATGACTGTGTGGACAAAATGGTAATTTGGTAGGTGGAGGGTACGATAGTT 8162 Query 1496 AACAAGGTGGTTGAATCCGCCAAGGCCATCCTGGGGG-----------GCTCAAAGGTGC 1544 || || || || ||||| | || |||| |||||| | ||| | | Sbjct 8163 AATAAAGTTGTGGAATCTGTTAAAGCCAAAATGGGGGTGGGGTGGGGTGGTCAGCCATCC 8222 Query 1545 GGGTCGATCAGAAATGTAAATCCTCTGTTCAAATTGATTCTACCCCTGTCATTGTAACTT 1604 ||| |||| ||||||||| ||||| ||||| || | || ||||| || ||| Sbjct 8223 AGGT-TATCAAAAATGTAAAGTATCTGTACAAATAGAACCCACGCCTGTAATCATAA--- 8278 Query 1605 CCAATACAAACATGTGTG----TGGTGGTGGATGGGAATTCCACGACCTTTGAACACCAG 1660 | |||| |||| ||||| | || || ||||| || | | | || ||||| ||| || Sbjct 8279 CAAATA-AAACTGGTGTGAGTTTAGTAGTAGATGGCAACTGCCCAACTTTTGAGCACAAG 8337 Query 1661 CAGCCGCTGGAGGA 1674 |||| || ||||| Sbjct 8338 GAGCCTCTCGAGGA 8351 >seq65713 Length=16701 Score = 145 bits (160), Expect = 2e-31 Identities = 233/336 (69%), Gaps = 8/336 (2%) Strand=Plus/Minus Query 1321 CAAGAGGAACACCGTCTGGCTCTACGGACCCGCCACGACCGGCAAGACCAACATCGCGGA 1380 ||| || |||||| | ||| || || ||| || | || || |||||||||||| | || Sbjct 4391 CAAAAGAAACACCATGTGGTTCCACAGACATGCAGCCACTGGGAAGACCAACATCACAGA 4332 Query 1381 GGCCATCGCCCACACTGTGCCCTTTTACGGCTGCGTGAACTGGACCAATGAAAACTTTCC 1440 ||| || ||||| ||||| |||||| | | | || |||| ||||||||| Sbjct 4331 GGCTATTGCCCATGCTGTGT--------GGCTGCATAACCCAGAGTAATGGAAACTTTCC 4280 Query 1441 CTTTAATGACTGTGTGGACAAAATGCTCATTTGGTGGGAGGAGGGAAAGATGACCAACAA 1500 |||||||||| | ||| |||||| | ||||||| ||||||||| || ||||| || | Sbjct 4279 TTTTAATGACTATAGGGATAAAATGATTATTTGGTAGGAGGAGGGTAAAATGACTAATGA 4220 Query 1501 GGTGGTTGAATCCGCCAAGGCCATCCTGGGGGGCTCAAAGGTGCGGGTCGATCAGAAATG 1560 || || | || || ||||| | |||||| || | |||| |||||| |||| Sbjct 4219 TGTTGTGAAGTCTGCAAAGGCTCTTTTGGGGGAATCTGCCATAAGGGTTGATCAGGAATG 4160 Query 1561 TAAATCCTCTGTTCAAATTGATTCTACCCCTGTCATTGTAACTTCCAATACAAACATGTG 1620 ||||| |||| |||| ||| | || ||||| ||| | || || | | ||||| Sbjct 4159 TAAATGGCCTGTACAAACTGAACCCACTCCTGTGATTATTACCAGTAACATTGATATGTG 4100 Query 1621 TGTGGTGGTGGATGGGAATTCCACGACCTTTGAACA 1656 | || ||||||||||| || || |||||||| Sbjct 4099 GATTGTAGTGGATGGGAACAGTACAACTTTTGAACA 4064 Score = 114 bits (126), Expect = 4e-22 Identities = 309/471 (66%), Gaps = 11/471 (2%) Strand=Plus/Minus Query 2834 GGAGTGGGCAATGCCTCGGGAGATTGGCATTGCGATTCCACGTGGATGGGGGACAGAGTC 2893 |||||||| | ||| ||| |||||||||| |||| ||| || | | || Sbjct 2757 GGAGTGGGTTAGATCTCAGGAAATTGGCATTGTAATTCACAATGGCAAGGCAATATGGTT 2698 Query 2894 GTCACCAAGTCCACCCGAACCTGGGTGCTGCCCAGCTACAACAACCACCAGTACCGAGAG 2953 ||||||||| ||| | ||||||| ||||| ||| ||||||| ||| | | Sbjct 2697 ACCACCAAGTCAACCACAGCCTGGGTACTGCCTTCCTATGACAACCATTTATACAAACAA 2638 Query 2954 ATCAAAAGCGGCTCCGTCGACGGAAGCAACGCCAACGCCTACTTTGGATACAGCACCCCC 3013 |||||| | | ||| ||| | | || | |||| ||||||| ||||| || Sbjct 2637 ATCAAAGGAGAATCCACAGAC-------ATGTCA--GTCTACCTTGGATATAGCACTCCA 2587 Query 3014 TGGGGGTACTTTGACTTTAACCGCTTCCACAGCCACTGGAGCCCCCGAGACTGGCAAAGA 3073 |||| || ||||||| || | ||||| | ||||| ||| || ||||||||||| | Sbjct 2586 TGGGCCTATCTTGACTTCAATAGATTCCAATGTCACTGAAGCTCCTGAGACTGGCAATGC 2527 Query 3074 CTCATCAACAACTACTGGGGCTTCAGACCCCGGTCCCTCAGAGTCAAAATCTTCAACATT 3133 |||||| ||| |||| ||| |||| | |||| ||||||| |||||||| Sbjct 2526 CTCATCGGCAATTACTAGGGACCACGACCAAAAAGCTGCAGAATCAAAATATTCAACATC 2467 Query 3134 CAAGTCAAAGAGGTCACGGTG-CAGGACTCCACCACNNNNATCGCCAACAACCTCACCTC 3192 ||||| || |||||| | | | ||| | ||| | || |||||||| | | || Sbjct 2466 CAAGTTAAGGAGGTCGCAGAGACAGCA-AGCACGAAAACAATTGCCAACAATTTAGCATC 2408 Query 3193 CACCGTCCAAGTGTTTACGGACGACGACTACCAGCTGCCCTACGTCGTCGGCAACGGGAC 3252 ||| || | | ||| | || ||| || || ||||| || ||| | || || | || Sbjct 2407 CACAATCTAGATATTTTCAGATGACACATATCAACTGCCTTATGTCATTGGTAATGTTAC 2348 Query 3253 CGAGGGATGCCTGCCGGCCTTCCCTCCGCAGGTCTTTACGCTGCCGCAGTA 3303 || |||||| |||| ||| || | ||||||| ||| || || || Sbjct 2347 AGAAGGATGCTTGCCAAACTTTCCAGGCGATGTCTTTATGCTTCCTCAATA 2297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14713794975755