Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteronotus_20parnellii_20[genbank_20GCA_5F000465405.1_202013-09-13] 177,401 sequences; 1,960,317,893 total letters Query= NC_006260.1 Length=4721 Score E Sequences producing significant alignments: (Bits) Value seq91248 109 2e-20 seq65713 104 7e-19 >seq91248 Length=32913 Score = 109 bits (120), Expect = 2e-20 Identities = 124/164 (76%), Gaps = 2/164 (1%) Strand=Plus/Plus Query 1315 AACACCATCTGGCTGTTTGGGCCCGCCACCACCGGCAAGACCAACATTGCGGAAGCCATC 1374 |||||||| ||| | | || || || ||||| || ||||||||||| || || || || Sbjct 7997 AACACCATATGGTTCTACGGACCTGCAACCACAGGGAAGACCAACATCGCAGAGGCTATT 8056 Query 1375 GCCCACGCCGTGCCCTTCTACGGCTGCGTCAACTGGACCAATGAGAACTTTCCCTTCAAC 1434 ||||| || | || ||||| |||| || | |||||| ||||| |||||| |||| || Sbjct 8057 GCCCATGCTGGGCTTTTCTATAGCTGTGTTAGCTGGACTAATGA-AACTTT-CCTTTAAT 8114 Query 1435 GATTGCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGCAAGAT 1478 || || || ||||| ||||| || |||| || |||||| | ||| Sbjct 8115 GACTGTGTGGACAAAATGGTAATTTGGTAGGTGGAGGGTACGAT 8158 Score = 87.8 bits (96), Expect = 5e-14 Identities = 122/169 (72%), Gaps = 8/169 (5%) Strand=Plus/Plus Query 3037 CACCTACTTCGGCTACAGCACCCCCTGGGGGTATTTTGACTTTAACAGATTCCACTGCCA 3096 ||||||| |||| ||||||| ||| |||| || ||||||| ||||||||||| ||| Sbjct 9747 CACCTACCTCGGATACAGCATCCCATGGGCATACATTGACTTCAACAGATTCCAGTGCTG 9806 Query 3097 CTTCTCACCACGTGACTGGCAGCGACTCATCAACAACAACTGGGGATTCCGGCCCAAGAA 3156 || || | |||||||| | ||||||||| ||| ||| | ||| |||| || Sbjct 9807 CTGGAGTGCAAGGGACTGGCAACAACTCATCAATAACTACTTTGCCCTCC-ATCCAAAAA 9865 Query 3157 GCTGCGGT-TCAAGCTCTTC------AACATCCAGGTCAAGGAGGTCAC 3198 ||||| || |||| ||||| ||| |||| | ||||||||||| Sbjct 9866 GCTGCTGTGTCAAAATCTTCCAAGTTAACTTCCAAATTAAGGAGGTCAC 9914 >seq65713 Length=16701 Score = 104 bits (114), Expect = 7e-19 Identities = 218/319 (68%), Gaps = 17/319 (5%) Strand=Plus/Minus Query 2882 GGAGTGGGTAATGCCTCAGGAAATTGGCATTGCGATTCCACATGGCTGGGCGACAGAGTC 2941 ||||||||| | |||||||||||||||||| |||| ||||| ||| | | || Sbjct 2757 GGAGTGGGTTAGATCTCAGGAAATTGGCATTGTAATTCACAATGGCAAGGCAATATGGT- 2699 Query 2942 ATTACCACCAGC---ACCCGAACCTGGGCCCTGCCCACCTACAACAACCACCTCTACAAG 2998 |||||||| ||| | |||||| ||||| |||| ||||||| | ||||| Sbjct 2698 --TACCACCAAGTCAACCACAGCCTGGGTACTGCCTTCCTATGACAACCATTTATACAAA 2641 Query 2999 CAAATCTCCAGTGAAACTGCAGGTAGTACCAACGACAACACCTACTTCGGCTACAGCACC 3058 |||||| | ||| | ||| || | | || |||| | || || ||||| Sbjct 2640 CAAATCAAAGGAGAATCCACAG-----AC--ATGTCAGT--CTACCTTGGATATAGCACT 2590 Query 3059 CCCTGGGGGTATTTTGACTTTAACAGATTCCACTGCCACTTCTCACCACGTGACTGGCAG 3118 || |||| ||| ||||||| || |||||||| || |||| | | |||||||| Sbjct 2589 CCATGGGCCTATCTTGACTTCAATAGATTCCAATGTCACTGAAGCTCCTGAGACTGGCAA 2530 Query 3119 CGACTCATCAACAACAACTGGGGATTCCGGCCCAAGAAGCTGCGGT-TCAAGCTCTTCAA 3177 | |||||| ||| ||| |||| || || || ||||||| | |||| | ||||| Sbjct 2529 TGCCTCATCGGCAATTACTAGGGACCACGACCAAA-AAGCTGCAGAATCAAAATATTCAA 2471 Query 3178 CATCCAGGTCAAGGAGGTC 3196 |||||| || ||||||||| Sbjct 2470 CATCCAAGTTAAGGAGGTC 2452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14966104461990