Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteronotus_20parnellii_20[genbank_20GCA_5F000465405.1_202013-09-13] 177,401 sequences; 1,960,317,893 total letters Query= NC_006261.1 Length=4393 Score E Sequences producing significant alignments: (Bits) Value seq91248 122 2e-24 seq65713 105 2e-19 >seq91248 Length=32913 Score = 122 bits (134), Expect = 2e-24 Identities = 143/191 (75%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 1187 TGGGCTCAGAAAAAGTTCGGGAAACGCAACACCATCTGGCTGTTTGGACCCGCCACCACC 1246 ||||| || | ||||| |||| |||||||| ||| | | ||||| || ||||| Sbjct 7970 TGGGCGCACTGAGAGTTCAACAAACAAAACACCATATGGTTCTACGGACCTGCAACCACA 8029 Query 1247 GGCAAGACCAACATTGCGGAAGCCATCGCCCACGCCGTGCCCTTCTACGGCTGCGTCAAC 1306 || ||||||||||| || || || || ||||| || | || ||||| |||| || | | Sbjct 8030 GGGAAGACCAACATCGCAGAGGCTATTGCCCATGCTGGGCTTTTCTATAGCTGTGTTAGC 8089 Query 1307 TGGACCAATGAGAACTTTCCCTTCAATGATTGCGTCGACAAGATGGTGATCTGGTGGGAG 1366 ||||| ||||| |||||| |||| ||||| || || ||||| ||||| || |||| || | Sbjct 8090 TGGACTAATGA-AACTTT-CCTTTAATGACTGTGTGGACAAAATGGTAATTTGGTAGGTG 8147 Query 1367 GAGGGCAAGAT 1377 ||||| | ||| Sbjct 8148 GAGGGTACGAT 8158 Score = 93.3 bits (102), Expect = 1e-15 Identities = 145/208 (70%), Gaps = 6/208 (3%) Strand=Plus/Plus Query 2939 CACCTACTTCGGCTACAGCACCCCCTGGGGGTATTTTGACTTTAACAGATTCCACTGCCA 2998 ||||||| |||| ||||||| ||| |||| || ||||||| ||||||||||| ||| Sbjct 9747 CACCTACCTCGGATACAGCATCCCATGGGCATACATTGACTTCAACAGATTCCAGTGCTG 9806 Query 2999 CTTTTCACCACGTGACTGGCAGCGACTCATCAACAACAACTGGGGATTCCGGCCCAAGAG 3058 || || | |||||||| | ||||||||| ||| ||| | ||| || || || Sbjct 9807 CTGGAGTGCAAGGGACTGGCAACAACTCATCAATAACTACTTTGCCCTCCATCCAAAAAG 9866 Query 3059 ACTCAGCTTCAAGCTCTTC------AACATCCAGGTCAAGGAGGTCACGCAGAATGAAGG 3112 | | |||| ||||| ||| |||| | ||||||||||| || || ||| Sbjct 9867 CTGCTGTGTCAAAATCTTCCAAGTTAACTTCCAAATTAAGGAGGTCACAGAGGCTGCAGG 9926 Query 3113 CACCAAGACCATCGCCAATAACCTCACC 3140 ||| ||||| | || || ||||| ||| Sbjct 9927 CACGAAGACAACTGCAAACAACCTAACC 9954 >seq65713 Length=16701 Score = 105 bits (116), Expect = 2e-19 Identities = 239/355 (67%), Gaps = 16/355 (5%) Strand=Plus/Minus Query 2781 GGAGTGGGT-AGTTCCTCGGGAAATTGGCATTGCGATTCCACATGGCTGGGCGACAGAGT 2839 ||||||||| || || || |||||||||||||| |||| ||||| ||| | | || Sbjct 2757 GGAGTGGGTTAGATC-TCAGGAAATTGGCATTGTAATTCACAATGGCAAGGCAATATGGT 2699 Query 2840 CATCACCACCAGCACCCGAACCTGGGCCCTGCCCACCTACAACAACCACCTCTACAAGCA 2899 | ||||| ||| | |||||| ||||| |||| ||||||| | ||||| || Sbjct 2698 TACCACCAAGTCAACCACAGCCTGGGTACTGCCTTCCTATGACAACCATTTATACAAACA 2639 Query 2900 AATCTCCAACGGGACATCGGGAGGAGCCACCAACGACAACAC-CTACTTCGGCTACAGCA 2958 |||| || |||| | |||| || | || |||| | || || |||| Sbjct 2638 AATCA--AA----------GGAGAATCCACAGAC-ATGTCAGTCTACCTTGGATATAGCA 2592 Query 2959 CCCCCTGGGGGTATTTTGACTTTAACAGATTCCACTGCCACTTTTCACCACGTGACTGGC 3018 | || |||| ||| ||||||| || |||||||| || |||| | | ||||||| Sbjct 2591 CTCCATGGGCCTATCTTGACTTCAATAGATTCCAATGTCACTGAAGCTCCTGAGACTGGC 2532 Query 3019 AGCGACTCATCAACAACAACTGGGGATTCCGGCCCAAGAGACTCAGCTTCAAGCTCTTCA 3078 | | |||||| ||| ||| |||| || || || || ||| |||| | |||| Sbjct 2531 AATGCCTCATCGGCAATTACTAGGGACCACGACCAAAAAGCTGCAGAATCAAAATATTCA 2472 Query 3079 ACATCCAGGTCAAGGAGGTCACGCAGAATGAAGGCACCAAGACCATCGCCAATAA 3133 ||||||| || ||||||||| | ||| | | |||| || || || ||||| || Sbjct 2471 ACATCCAAGTTAAGGAGGTCGCAGAGACAGCAAGCACGAAAACAATTGCCAACAA 2417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 13918541025470