Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pteronotus_20parnellii_20[genbank_20GCA_5F000465405.1_202013-09-13]
177,401 sequences; 1,960,317,893 total letters
Query= NC_006261.1
Length=4393
Score E
Sequences producing significant alignments: (Bits) Value
seq91248 122 2e-24
seq65713 105 2e-19
>seq91248
Length=32913
Score = 122 bits (134), Expect = 2e-24
Identities = 143/191 (75%), Gaps = 2/191 (1%)
Strand=Plus/Plus
Query 1187 TGGGCTCAGAAAAAGTTCGGGAAACGCAACACCATCTGGCTGTTTGGACCCGCCACCACC 1246
||||| || | ||||| |||| |||||||| ||| | | ||||| || |||||
Sbjct 7970 TGGGCGCACTGAGAGTTCAACAAACAAAACACCATATGGTTCTACGGACCTGCAACCACA 8029
Query 1247 GGCAAGACCAACATTGCGGAAGCCATCGCCCACGCCGTGCCCTTCTACGGCTGCGTCAAC 1306
|| ||||||||||| || || || || ||||| || | || ||||| |||| || | |
Sbjct 8030 GGGAAGACCAACATCGCAGAGGCTATTGCCCATGCTGGGCTTTTCTATAGCTGTGTTAGC 8089
Query 1307 TGGACCAATGAGAACTTTCCCTTCAATGATTGCGTCGACAAGATGGTGATCTGGTGGGAG 1366
||||| ||||| |||||| |||| ||||| || || ||||| ||||| || |||| || |
Sbjct 8090 TGGACTAATGA-AACTTT-CCTTTAATGACTGTGTGGACAAAATGGTAATTTGGTAGGTG 8147
Query 1367 GAGGGCAAGAT 1377
||||| | |||
Sbjct 8148 GAGGGTACGAT 8158
Score = 93.3 bits (102), Expect = 1e-15
Identities = 145/208 (70%), Gaps = 6/208 (3%)
Strand=Plus/Plus
Query 2939 CACCTACTTCGGCTACAGCACCCCCTGGGGGTATTTTGACTTTAACAGATTCCACTGCCA 2998
||||||| |||| ||||||| ||| |||| || ||||||| ||||||||||| |||
Sbjct 9747 CACCTACCTCGGATACAGCATCCCATGGGCATACATTGACTTCAACAGATTCCAGTGCTG 9806
Query 2999 CTTTTCACCACGTGACTGGCAGCGACTCATCAACAACAACTGGGGATTCCGGCCCAAGAG 3058
|| || | |||||||| | ||||||||| ||| ||| | ||| || || ||
Sbjct 9807 CTGGAGTGCAAGGGACTGGCAACAACTCATCAATAACTACTTTGCCCTCCATCCAAAAAG 9866
Query 3059 ACTCAGCTTCAAGCTCTTC------AACATCCAGGTCAAGGAGGTCACGCAGAATGAAGG 3112
| | |||| ||||| ||| |||| | ||||||||||| || || |||
Sbjct 9867 CTGCTGTGTCAAAATCTTCCAAGTTAACTTCCAAATTAAGGAGGTCACAGAGGCTGCAGG 9926
Query 3113 CACCAAGACCATCGCCAATAACCTCACC 3140
||| ||||| | || || ||||| |||
Sbjct 9927 CACGAAGACAACTGCAAACAACCTAACC 9954
>seq65713
Length=16701
Score = 105 bits (116), Expect = 2e-19
Identities = 239/355 (67%), Gaps = 16/355 (5%)
Strand=Plus/Minus
Query 2781 GGAGTGGGT-AGTTCCTCGGGAAATTGGCATTGCGATTCCACATGGCTGGGCGACAGAGT 2839
||||||||| || || || |||||||||||||| |||| ||||| ||| | | ||
Sbjct 2757 GGAGTGGGTTAGATC-TCAGGAAATTGGCATTGTAATTCACAATGGCAAGGCAATATGGT 2699
Query 2840 CATCACCACCAGCACCCGAACCTGGGCCCTGCCCACCTACAACAACCACCTCTACAAGCA 2899
| ||||| ||| | |||||| ||||| |||| ||||||| | ||||| ||
Sbjct 2698 TACCACCAAGTCAACCACAGCCTGGGTACTGCCTTCCTATGACAACCATTTATACAAACA 2639
Query 2900 AATCTCCAACGGGACATCGGGAGGAGCCACCAACGACAACAC-CTACTTCGGCTACAGCA 2958
|||| || |||| | |||| || | || |||| | || || ||||
Sbjct 2638 AATCA--AA----------GGAGAATCCACAGAC-ATGTCAGTCTACCTTGGATATAGCA 2592
Query 2959 CCCCCTGGGGGTATTTTGACTTTAACAGATTCCACTGCCACTTTTCACCACGTGACTGGC 3018
| || |||| ||| ||||||| || |||||||| || |||| | | |||||||
Sbjct 2591 CTCCATGGGCCTATCTTGACTTCAATAGATTCCAATGTCACTGAAGCTCCTGAGACTGGC 2532
Query 3019 AGCGACTCATCAACAACAACTGGGGATTCCGGCCCAAGAGACTCAGCTTCAAGCTCTTCA 3078
| | |||||| ||| ||| |||| || || || || ||| |||| | ||||
Sbjct 2531 AATGCCTCATCGGCAATTACTAGGGACCACGACCAAAAAGCTGCAGAATCAAAATATTCA 2472
Query 3079 ACATCCAGGTCAAGGAGGTCACGCAGAATGAAGGCACCAAGACCATCGCCAATAA 3133
||||||| || ||||||||| | ||| | | |||| || || || ||||| ||
Sbjct 2471 ACATCCAAGTTAAGGAGGTCGCAGAGACAGCAAGCACGAAAACAATTGCCAACAA 2417
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 13918541025470
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |