Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteronotus_20parnellii_20[genbank_20GCA_5F000465405.1_202013-09-13] 177,401 sequences; 1,960,317,893 total letters Query= NC_006263.1 Length=4682 Score E Sequences producing significant alignments: (Bits) Value seq91248 136 1e-28 seq65713 125 2e-25 >seq91248 Length=32913 Score = 136 bits (150), Expect = 1e-28 Identities = 257/374 (69%), Gaps = 12/374 (3%) Strand=Plus/Plus Query 1218 CAAGCGAAACACGCTGTGGCTGTTCGGACCTGCGACCACCGGCAAGACCAACATCGCGGA 1277 ||| | |||||| | ||| | | ||||||||| ||||| || |||||||||||||| || Sbjct 7990 CAAACAAAACACCATATGGTTCTACGGACCTGCAACCACAGGGAAGACCAACATCGCAGA 8049 Query 1278 GGCTATTGCCCATGCTGTGCCGTTCTATGGATGCGTTAACTGGACCAACGAGAACTTTCC 1337 ||||||||||||||||| || |||||| | || |||| |||||| || || |||||||| Sbjct 8050 GGCTATTGCCCATGCTGGGCTTTTCTATAGCTGTGTTAGCTGGACTAATGA-AACTTTCC 8108 Query 1338 GTTCAACGACTGCGTCGAAAAGATGATTATCTGGTGGGAAGAGGGCAAAATGACCGCCAA 1397 || || ||||| || || || ||| | || |||| || ||||| | || || Sbjct 8109 -TTTAATGACTGTGTGGACAAAATGGTAATTTGGTAGGTGGAGGGTACGATAGTTAATAA 8167 Query 1398 GGTGGTGGAAACGGCTAAAGCGATTCTGGGAG-GATCTCGGGTG---AG------AGTGG 1447 || |||||| | | |||||| | |||| | | | ||||| || || Sbjct 8168 AGTTGTGGAATCTGTTAAAGCCAAAATGGGGGTGGGGTGGGGTGGTCAGCCATCCAGGTT 8227 Query 1448 ACCAAAAATGCAAAGCTTCGGTTCCGATCGAACCGACGCCGGTCATTATTACCAGTAACA 1507 | |||||||| |||| || || | || ||||| ||||| || || || || | ||| | Sbjct 8228 ATCAAAAATGTAAAGTATCTGTACAAATAGAACCCACGCCTGTAATCATAACAAATAAAA 8287 Query 1508 CCAACATGTGTTATGTCATCGACGGGAACACGACTACGTTCGAGCATAAGCAGCCGTTGG 1567 | || ||| || | || || ||| | || || ||||| ||| |||| | | Sbjct 8288 CTGGTGTGAGTTTAGTAGTAGATGGCAACTGCCCAACTTTTGAGCACAAGGAGCCTCTCG 8347 Query 1568 AGGACAGGATGTTT 1581 |||| | |||||| Sbjct 8348 AGGAGAAAATGTTT 8361 >seq65713 Length=16701 Score = 125 bits (138), Expect = 2e-25 Identities = 228/335 (68%), Gaps = 8/335 (2%) Strand=Plus/Minus Query 1223 GAAACACGCTGTGGCTGTTCGGACCTGCGACCACCGGCAAGACCAACATCGCGGAGGCTA 1282 ||||||| ||||| | | ||| ||| |||| || |||||||||||| | ||||||| Sbjct 4386 GAAACACCATGTGGTTCCACAGACATGCAGCCACTGGGAAGACCAACATCACAGAGGCTA 4327 Query 1283 TTGCCCATGCTGTGCCGTTCTATGGATGCGTTAACTGGACCAACGAGAACTTTCCGTTCA 1342 |||||||||||||| ||| ||| | | | || || | |||||||| || | Sbjct 4326 TTGCCCATGCTGTG--------TGGCTGCATAACCCAGAGTAATGGAAACTTTCCTTTTA 4275 Query 1343 ACGACTGCGTCGAAAAGATGATTATCTGGTGGGAAGAGGGCAAAATGACCGCCAAGGTGG 1402 | |||| || || |||||||| |||| ||| ||||| |||||||| | || | Sbjct 4274 ATGACTATAGGGATAAAATGATTATTTGGTAGGAGGAGGGTAAAATGACTAATGATGTTG 4215 Query 1403 TGGAAACGGCTAAAGCGATTCTGGGAGGATCTCGGGTGAGAGTGGACCAAAAATGCAAAG 1462 || | | || || || || |||| | |||| | || || || || |||| ||| Sbjct 4214 TGAAGTCTGCAAAGGCTCTTTTGGGGGAATCTGCCATAAGGGTTGATCAGGAATGTAAAT 4155 Query 1463 CTTCGGTTCCGATCGAACCGACGCCGGTCATTATTACCAGTAACACCAACATGTGTTATG 1522 | || | | ||||| || || || |||||||||||||||| | ||||| || Sbjct 4154 GGCCTGTACAAACTGAACCCACTCCTGTGATTATTACCAGTAACATTGATATGTGGATTG 4095 Query 1523 TCATCGACGGGAACACGACTACGTTCGAGCATAAG 1557 | | || ||||||| || || || || |||||| Sbjct 4094 TAGTGGATGGGAACAGTACAACTTTTGAACATAAG 4060 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14841546614355