Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013-
09-15] 160,500 sequences; 1,926,439,238 total letters
Query= NC_001401.2
Length=4679
Score E
Sequences producing significant alignments: (Bits) Value
seq86691 360 6e-96
seq99286 306 1e-79
>seq86691
Length=5340
Score = 360 bits (398), Expect = 6e-96
Identities = 534/747 (71%), Gaps = 20/747 (3%)
Strand=Plus/Plus
Query 989 GTACATGGAGCTGGTCGGGTGGCTCGTGGACAAGGGGATTACCTCGGAGAAGCAGTGGAT 1048
|||||||||||| || ||||| ||||| | || ||||| || |||| ||| ||||
Sbjct 2263 GTACATGGAGCTCGTTAACTGGCTGGTGGAGATCGGCATTACGTCAGAGA-GCAACGGAT 2321
Query 1049 CCAGGAGGACCAGGCCTCATACATCTCCTTCAATGCGGCCTCCAACTCGCGGTCCCAAAT 1108
|||||| | |||| || | ||||| | ||| ||| | | | | || | ||||
Sbjct 2322 TCAGGAGAAGCAGGAATCCTGTATCTCTTACAACGCGACGGGCGATGCCCGCTTGCAAAA 2381
Query 1109 CAAGGCTGCCTTGGACAATGCGGGAAAGATTATGAGCCTGACTAAAACCGCCCCCGACTA 1168
|||| | || ||||||| || || | || || ||||||| | || ||| | |||
Sbjct 2382 CAAGTCGGCTCTGGACAACGCCGGCCAAATCGTGGGCCTGACCACCACGGCCTCAGACGG 2441
Query 1169 CCTGGTGGGC-CAGCA--GCCCGTG----GAGGACATTTCCAGCAATCGGATTTATAAAA 1221
|| ||| || | ||| ||| | | |||||| | ||| || | | ||
Sbjct 2442 CCGGGTCGGTTCCGCACCGCCAGAGCATCGAGGACGA---CCGCA-TCCGCTGCATC--- 2494
Query 1222 TTTTGGAACTAAACGGGTACGATCCCCAATATGCGGCTTCCGTCTTTCTGGGATGGGCCA 1281
|| | || |||| | || || || || | ||||| | |||| ||| |
Sbjct 2495 --TTTCACCTCCACGGCTGCGGCCCGGCCTACGCCGGCTCCGTGGTGCTGGCCTGGTGCC 2552
Query 1282 CGAAAAAGTTCGGCAAGAGGAACACCATCTGGCTGTTTGGGCCTGCAACTACCGGGAAGA 1341
|| ||||| ||| || ||||| || ||||||| ||||| ||||| | || || ||||
Sbjct 2553 GGAGAAAGTCTGGCCAGCGGAACGCCGTCTGGCTCTTTGGACCTGCGCCCACGGGAAAGA 2612
Query 1342 CCAACATCGCGGAGGCCATAGCCCACACTGTGCCCTTCTACGGGTGCGTAAACTGGACCA 1401
||| | | |||| | | | || || |||||||||| || ||| |||| ||||||||||
Sbjct 2613 CCAGCGTTGCGGTGTCTACTGCGCATGCTGTGCCCTTTTATGGGCGCGTCAACTGGACCA 2672
Query 1402 ATGAGAACTTTCCCTTCAACGACTGTGTCGACAAGATGGTGATCTGGTGGGAGGAGGGGA 1461
|||||||||| || || || ||||| ||||||| |||||| |||||||||||||| |
Sbjct 2673 GCGAGAACTTTCTCTCCAT-GATTGTGTGGACAAGACGGTGATTTGGTGGGAGGAGGGCA 2731
Query 1462 AGATGACCGCCAAGGTCGTGGAGTCGGCCAAAGCCATTCTCGGAGGAAGCAAGGTGCGCG 1521
|||| | ||||| ||||||||||||||| | ||||| || || | | | || | |
Sbjct 2732 CGATGGCGGCCAAAGTCGTGGAGTCGGCCGAGGCCATCCTGGGGGCTCGGCTG-TGTGAG 2790
Query 1522 TGGACCAGAAATGCAAGTCCTCGGCCCAGATAGACCCGACTCCCGTGATCGTCACCTCCA 1581
||||||||||||||||| ||||| |||| || || || || || ||| |||||||||
Sbjct 2791 TGGACCAGAAATGCAAG-CCTCGCAGCAGACGGAACCCACACCGGTCATCATCACCTCCA 2849
Query 1582 ACACCAACATGTGCGCCGTGATTGACGGGAACTCAACGACCTTCGAACACCAGCAGCCGT 1641
|||||||||||| || | |||||||| ||||| | |||||| |||||||| |||||||
Sbjct 2850 ACACCAACATGTCCGTGGCCATTGACGGAAACTCGAAGACCTTTGAACACCAACAGCCGT 2909
Query 1642 TGCAAGACCGGATGTTCAAATTTGAACTCACCCGCCGTCTGGATCATGACTTTGGGAAGG 1701
| || | ||| |||||||| |||||||| || ||| ||| | ||||||||||| |
Sbjct 2910 TACAGGCCCGCATGTTCAAGTTTGAACTGACTTAGCGTTTGGTGCCAGACTTTGGGAAAG 2969
Query 1702 TCACCAAGCAGGAAGTCAAAGACTTTT 1728
| || |||||||| |||||||||||||
Sbjct 2970 TGACTAAGCAGGAGGTCAAAGACTTTT 2996
Score = 351 bits (388), Expect = 3e-93
Identities = 519/725 (72%), Gaps = 24/725 (3%)
Strand=Plus/Plus
Query 2809 ATGGCTACAGGCAGTGGCGC---ACCAATGGCAGACAATAACGAGGGCGCCGACGGAGTG 2865
||||||||||| | |||| ||||| || ||||| | ||| ||||| | |||
Sbjct 4130 ATGGCTACAGGAGGCAGCGCTCCACCAA--GC-GACAACATGCCGGGTGCCGATGCCGTG 4186
Query 2866 GGTAATTCCTCGGGAAATTGGCATTGCGATTCCACATGGATGGGCGACAGAGTCATCACC 2925
|| | |||||||||||||||| ||||||||||| |||||||||| || || |||||
Sbjct 4187 GGGAGCTCCTCGGGAAATTGGCGTTGCGATTCCAAATGGATGGGCAACCACGTGCTCACC 4246
Query 2926 ACCAGCACCCGAACCTGGGCCCTGCCCACCTACAACAACCACCTCTACAAACAAATTTCC 2985
| |||| | ||||||| |||||||| ||||||| |||||| ||||| | || |
Sbjct 4247 AAGTCCACCGGGACCTGGGTCCTGCCCAGCTACAACCACCACCAGTACAAGCGCAT--CG 4304
Query 2986 AGCCAATCAGGAGCCTCGAAC---GACAATCACTACTTTGGCTACAGCACCCCTTGGGGG 3042
| || | |||||| | | | |||||| |||| ||||| || ||||||||
Sbjct 4305 ACTCACAC-GGAGCCACCAGCAATGACAATTTCTACA---GCTACTCTACTCCTTGGGGA 4360
Query 3043 TATTTTGACTTCAACAGATTCCACTGCCACTTTTCACCACGTGACTGGCAAAGACTCATC 3102
|| |||||||| ||| | ||||| | |||||||||||| || |||||||| | || ||
Sbjct 4361 TACTTTGACTTTAACCGCTTCCAGTACCACTTTTCACCCCGAGACTGGCAGGGCTTCGTC 4420
Query 3103 AACAACAACTGGGGATTCCGACCCAAGAGACTCAACTTCAAGCTCTTTAACATTCAAGTC 3162
|||||||| ||||| |||| ||||||||||| ||||||||| || ||| | || ||
Sbjct 4421 AACAACAATTGGGGTATCCGGCCCAAGAGACTTTCCTTCAAGCTGTTCAACGTCCAGGTT 4480
Query 3163 AAAGAGGTCACGCAGAATGACGGTACGACGACGATTGCCAATAACCTTACCAGCACGGTT 3222
|| |||||||| | | || || | ||||| || |||||||||| |||||||| |
Sbjct 4481 AAGGAGGTCACTACGCAGGAGGGAGCCACGACCATCACCAATAACCTCACCAGCACCATC 4540
Query 3223 CAGGTGTTTACTGACTCGGAGTACCAGCTCCCGTACGTCCTCGGCTCGGCGCATCAAGGA 3282
||||| ||| | ||| |||| | |||| ||||| |||| || ||| ||||| | |||
Sbjct 4541 CAGGTCTTTGCGGACGCGGACTGCCAGTTCCCGCACGTGCTAGGCAACGCGCACGAGGGA 4600
Query 3283 TGCCTCCCGCCGTTCCCAGCAGACGTCTTCATGGTGCCACAGTATGGATACCTCACCCTG 3342
|| || || ||||| |||||||||| ||||| ||||| | || || ||
Sbjct 4601 ACGCTGCCTCCCTTCCC----GACGTCTTCACCGTGCCCCAGTACGCCGACTGCA-GCTC 4655
Query 3343 AACAACGGGAGTCAGGCAGTAGGACGCTCTTCA--TTTTACTGCCTGGAGTACTTTCCTT 3400
||||||||| | || || ||| | || || | |||||| | |||| | |
Sbjct 4656 AACAACGGGGACAAAGCCACAG--CGCGCAGCAGCTTCTGCTGCCTCGGGTACATGCGGA 4713
Query 3401 CTCAGATGCTGCGTACCGGAAACAACTTTACCTTCAGCTACACTTTTGAGGACGTTCCTT 3460
||||||||||| ||||| ||||||| |||||| ||| ||||||||||| || |
Sbjct 4714 GCCAGATGCTGCGGACCGGCAACAACTACGCCTTCATGTACCAGTTTGAGGACGTACCCT 4773
Query 3461 TCCACAGCAGCTACGCTCACAGCCAGAGTCTGGACCGTCTCATGAATCCTCTCATCGACC 3520
||| | | ||| |||| |||||| ||||||| || ||||| || |||| ||||
Sbjct 4774 CTCACTGGATGTACATGCACATCCAGAGCCTGGACCACCTGATGAAGCCGTTCATGGACC 4833
Query 3521 AGTAC 3525
|||||
Sbjct 4834 AGTAC 4838
Score = 161 bits (178), Expect = 3e-36
Identities = 303/441 (69%), Gaps = 17/441 (4%)
Strand=Plus/Plus
Query 2078 GTATCAGAAACTGTGCTACATTCATCATATCATGGGAAAGGTGCCAGACGCT---TGCAC 2134
|||| | || |||||| |||||||||| |||| || |||||| | || |
Sbjct 3417 GTATAAAAAGCTGTGCGCAGTTCATCATATTCTGGGCCCGGCGCCAGAGGGCCAGTGTTC 3476
Query 2135 TGCCTGCGATCTGGTCAATGTGGAT----TTG---GATGACTGCATCTTTGAACAATAAA 2187
|||||| |||| | |||||| || ||| ||| |||||| ||||||| |
Sbjct 3477 TGCCTGTAATCTCGCCAATGTTGACAATGTTGATCGATAACTGCAATAAAGAACAATGAT 3536
Query 2188 TGATTTAAATCAGGTATGGCTGCCGATGGTTATCTTCCAGATTGGCTCGAGGACACTCTC 2247
||| | ||| ||| |||||||| |||||||| ||||||| ||| | ||||||||| ||
Sbjct 3537 TGACTCAAA-CAGATATGGCTG---ATGGTTATTTTCCAGACTGGTTGGAGGACACTTTC 3592
Query 2248 TCTGAAGGAATAAGACAGTGGTGGAAGCTCAAACCTGGCCCACCACCACCAAAGCCCGCA 2307
||||| || | |||||| || ||| |||| | || ||| |||
Sbjct 3593 TCTGAGGGTCGGCGCCAGTGGAATAAATGCAAGGCTGGAGCGCCCAAACCGCGGCCTCAC 3652
Query 2308 GAGCGGCATAAGGACGACAGCAGGGGTCTTGTGCTTCCTGGGTACAAGTACCTCGGACCC 2367
||| || | ||| ||| ||| || ||||| || || || || ||| | |||
Sbjct 3653 CAGCATCACCAAGACTCTTCTCGGGTTCTGGTCCTTCCGGGATATAAATATCTCAGTCCC 3712
Query 2368 TTCAACGGACTCGACAAGGGAGAGCCGGTCAACGAGGCAGACGCCGCGGCCCTCGAGCAC 2427
|||||||| || || |||||||| | |||||| ||||||||||| || || |||||
Sbjct 3713 TTCAACGGTCTGGATAAGGGAGACCTGGTCAATCGGGCAGACGCCGTCGCTCTAGAGCAT 3772
Query 2428 GACAAAGCCTACGACCGGCAGCTCGACAGCGGAGACAACCCGTACCTCAAGTACAACCAC 2487
| ||| |||| | ||||||||| ||| ||||||| | |||||||||||||||
Sbjct 3773 G---AAGGCTACAGCGAGCAGCTCGAGGCGGGACACAACCCCTCCCTCAAGTACAACCAT 3829
Query 2488 GCCGACGCGGAGTTTCAGGAG 2508
|||||| ||||| ||||||
Sbjct 3830 GCCGACAGAGAGTTCCAGGAG 3850
>seq99286
Length=7566
Score = 306 bits (338), Expect = 1e-79
Identities = 534/767 (70%), Gaps = 24/767 (3%)
Strand=Plus/Plus
Query 2774 CACCAGCAGCCCCCTCTGGTCTGGGAACTAATACGATGGCTACAGGCAGTGGCGCACCAA 2833
|| ||||||||||| | ||| | ||||||| |||||| |||| ||||| |||||
Sbjct 5612 CAGCAGCAGCCCCCGTCAATTTGGAACCTAATACAATGGCTGCAGGATGTGGCTCACCAG 5671
Query 2834 TGGCAGACAATAACGAGGGCGCCGACGGAGTGGGTAATTCCTCGGGAAATTGGCATTGCG 2893
||| ||||| | || | |||| ||||||||| | ||| || |||||||| |||
Sbjct 5672 TGGACGACAACATGCAGTGTGCCGCCGGAGTGGGCTCTGCCTGCGGTGATTGGCATGGCG 5731
Query 2894 ATTCCACATGGATGGGCGACAGAGTCATCACCACCAGCACCCGAACCTGGGCCCTGCCCA 2953
|| ||| |||||||| ||| |||| || | |||| | ||| ||| ||||||||
Sbjct 5732 ATACCAGGTGGATGGGAGACCTCATCATTACAAAGTCCACCTGGACCGGGGTCCTGCCCA 5791
Query 2954 CCTACAACAACCACCTCTACAAACAAATTTCCAGC-CAATCAGGAGCCTCGAACGACAAT 3012
||| ||||||||| |||||| | | |||| | | | | | | | ||| ||||
Sbjct 5792 CCTT-AACAACCACGTCTACAGGCGGACCACCAGTTCCACCGGCATCAGC-AACAACAAC 5849
Query 3013 CACTACTTTGGCTACAGCACCCCTTGGGGG---TATTTTGACTTCAACAGATTCCACTGC 3069
||||||||| |||||||||| | | | || |||||||||||| |||| |
Sbjct 5850 ACCTACTTTGGTTACAGCACCCGAGGAGAGCTGTACTTTGACTTCAAC------CACTTC 5903
Query 3070 CACTTTTCACCACGTGACTGGCAAAGACTCATCAACAACAACTGGGGATTCCGACCCAAG 3129
||||||||| | || |||||||| ||| |||| ||||||||||| |||| ||||||
Sbjct 5904 CACTTTTCATCCCGAGACTGGCAGCATCTCGTCAATAACAACTGGGGTGTCCGGCCCAAG 5963
Query 3130 AGACTCAACTTCAAGCTCTTTAACATTCAAGTCAAAGAGGTCACG-CAGAATGACGGTAC 3188
||||| |||||| | || | ||| ||||||| ||||||||| ||| ||| | ||
Sbjct 5964 TGACTCGGTTTCAAGTTATTCACCATATAAGTCAAGGAGGTCACGACAG-TCGACAGCAC 6022
Query 3189 GACGACGATTGCCAATAACCTTACCAGCACGGTTCAGGTGTTTACTG--ACTCGGAGTAC 3246
| ||| || |||||| |||| |||||||| | ||||||||| | || |||| |
Sbjct 6023 AAAGACCATCGCCAATGACCTCACCAGCACCATCCAGGTGTTTGTGGACACACGGACTGT 6082
Query 3247 CAGCTCCCGTACGTCCTCGGCTCGGCGCATCAAGGATGCCTCCCGCCGTTCCCAGCAGAC 3306
| |||||||| ||| ||| || || |||| ||||| || || || || || |
Sbjct 6083 CGGCTCCCGTCCGTGACTGGCAATGCCCACGAAGGGTGCCTACCCCCATTTCCGGCCTAT 6142
Query 3307 GTCTTCATGGTGCCACAGTATGGATACCTCACCCTGAACAACGGGAGTCAGGCAGT---- 3362
||||| ||| |||| || || |||||||| || | ||||| ||| | || ||
Sbjct 6143 GTCTTTATGATGCCTCAATACGGATACCTGACTTTCAACAATGGGCACAATGCCGTGCCC 6202
Query 3363 AGGACGCTCTTCATTTTACTGCCTGGAGTACTTTCCTTCTCAGATGCTGCGTACCGGAAA 3422
|||| || | | || || ||||||| |||||| | ||||| | || || ||
Sbjct 6203 AGGA-GC---ACCTACTATTGTCTGGAGTGCTTTCCCAGAAAAATGCTAAGAACAGGCAA 6258
Query 3423 CAACTTTACCTTCAGCTACACTTTTGAGGACGTTCCTTTCCACAGCAGCTACGCTCACAG 3482
||||||| |||| || ||| |||||||| || ||||| || | ||| |||||
Sbjct 6259 CAACTTTGCCTTTAGGTACGACTTTGAGGAGGTACCTTTTCAGTAGATGTACATACACAG 6318
Query 3483 CCAGAGTCTGGACCGTCTCATGAATCCTCTCATCGACCAGTACCTGT 3529
|||||| ||||| || ||||| || || | ||| ||||| |||
Sbjct 6319 CCAGAGCACTGACCGGCTGATGAACCCGCTGTTGGACTAGTACTTGT 6365
Score = 176 bits (194), Expect = 1e-40
Identities = 240/335 (72%), Gaps = 0/335 (0%)
Strand=Plus/Plus
Query 3983 ATGTCAACACACAAGGCGTTCTTCCAGGCATGGTCTGGCAGGACAGAGATGTGTACCTTC 4042
|||||||| | | | || || || |||||| |||||| || |||| | ||||| |
Sbjct 6787 ATGTCAACTCTCTCAGGGTGCTGCCTGGCATGAATTGGCAGAACTGAGACATCTACCTCC 6846
Query 4043 AGGGGCCCATCTGGGCAAAGATTCCACACACGGACGGACATTTTCACCCCTCTCCCCTCA 4102
|||| | |||||||| ||| |||||||||| |||||||| ||| | | ||||| ||||
Sbjct 6847 AGGGCCTGATCTGGGCCAAGGTTCCACACACTGACGGACACTTTTATCTGTCTCCTCTCA 6906
Query 4103 TGGGTGGATTCGGACTTAAACACCCTCCTCCACAGATTCTCATCAAGAACACCCCGGTAC 4162
|||| ||||| || || || | || ||||| ||||| || ||||||||||||||||
Sbjct 6907 TGGGGGGATTTGGTCTCAAGAAGCCCCCTCCTCAGATCCTGGTCAAGAACACCCCGGTTA 6966
Query 4163 CTGCGAATCCTTCGACCACCTTCAGTGCGGCAAAGTTTGCTTCCTTCATCACACAGTACT 4222
|||| | ||| | |||| | ||| | ||||||||| || ||
Sbjct 6967 CTGCCGACCCTCCAGTGGAATTCACAAGTGACAAGCTCAACAGCTTCATCACTCAATATA 7026
Query 4223 CCACGGGACAGGTCAGCGTGGAGATCGAGTGGGAGCTGCAGAAGGAAAACAGCAAACGCT 4282
||| ||||| || | |||||| || | |||||||||||| ||| || ||| | |
Sbjct 7027 GCACTGGACAAGTAACCGTGGAAATTAAATGGGAGCTGCAGCTGGAGGACTCCAAGAGGT 7086
Query 4283 GGAATCCCGAAATTCAGTACACTTCCAACTACAAC 4317
|||| || |||||||| ||||||||||||| ||||
Sbjct 7087 GGAACCCAGAAATTCAATACACTTCCAACTTCAAC 7121
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 14834712330000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |