Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013- 09-15] 160,500 sequences; 1,926,439,238 total letters Query= NC_001401.2 Length=4679 Score E Sequences producing significant alignments: (Bits) Value seq86691 360 6e-96 seq99286 306 1e-79 >seq86691 Length=5340 Score = 360 bits (398), Expect = 6e-96 Identities = 534/747 (71%), Gaps = 20/747 (3%) Strand=Plus/Plus Query 989 GTACATGGAGCTGGTCGGGTGGCTCGTGGACAAGGGGATTACCTCGGAGAAGCAGTGGAT 1048 |||||||||||| || ||||| ||||| | || ||||| || |||| ||| |||| Sbjct 2263 GTACATGGAGCTCGTTAACTGGCTGGTGGAGATCGGCATTACGTCAGAGA-GCAACGGAT 2321 Query 1049 CCAGGAGGACCAGGCCTCATACATCTCCTTCAATGCGGCCTCCAACTCGCGGTCCCAAAT 1108 |||||| | |||| || | ||||| | ||| ||| | | | | || | |||| Sbjct 2322 TCAGGAGAAGCAGGAATCCTGTATCTCTTACAACGCGACGGGCGATGCCCGCTTGCAAAA 2381 Query 1109 CAAGGCTGCCTTGGACAATGCGGGAAAGATTATGAGCCTGACTAAAACCGCCCCCGACTA 1168 |||| | || ||||||| || || | || || ||||||| | || ||| | ||| Sbjct 2382 CAAGTCGGCTCTGGACAACGCCGGCCAAATCGTGGGCCTGACCACCACGGCCTCAGACGG 2441 Query 1169 CCTGGTGGGC-CAGCA--GCCCGTG----GAGGACATTTCCAGCAATCGGATTTATAAAA 1221 || ||| || | ||| ||| | | |||||| | ||| || | | || Sbjct 2442 CCGGGTCGGTTCCGCACCGCCAGAGCATCGAGGACGA---CCGCA-TCCGCTGCATC--- 2494 Query 1222 TTTTGGAACTAAACGGGTACGATCCCCAATATGCGGCTTCCGTCTTTCTGGGATGGGCCA 1281 || | || |||| | || || || || | ||||| | |||| ||| | Sbjct 2495 --TTTCACCTCCACGGCTGCGGCCCGGCCTACGCCGGCTCCGTGGTGCTGGCCTGGTGCC 2552 Query 1282 CGAAAAAGTTCGGCAAGAGGAACACCATCTGGCTGTTTGGGCCTGCAACTACCGGGAAGA 1341 || ||||| ||| || ||||| || ||||||| ||||| ||||| | || || |||| Sbjct 2553 GGAGAAAGTCTGGCCAGCGGAACGCCGTCTGGCTCTTTGGACCTGCGCCCACGGGAAAGA 2612 Query 1342 CCAACATCGCGGAGGCCATAGCCCACACTGTGCCCTTCTACGGGTGCGTAAACTGGACCA 1401 ||| | | |||| | | | || || |||||||||| || ||| |||| |||||||||| Sbjct 2613 CCAGCGTTGCGGTGTCTACTGCGCATGCTGTGCCCTTTTATGGGCGCGTCAACTGGACCA 2672 Query 1402 ATGAGAACTTTCCCTTCAACGACTGTGTCGACAAGATGGTGATCTGGTGGGAGGAGGGGA 1461 |||||||||| || || || ||||| ||||||| |||||| |||||||||||||| | Sbjct 2673 GCGAGAACTTTCTCTCCAT-GATTGTGTGGACAAGACGGTGATTTGGTGGGAGGAGGGCA 2731 Query 1462 AGATGACCGCCAAGGTCGTGGAGTCGGCCAAAGCCATTCTCGGAGGAAGCAAGGTGCGCG 1521 |||| | ||||| ||||||||||||||| | ||||| || || | | | || | | Sbjct 2732 CGATGGCGGCCAAAGTCGTGGAGTCGGCCGAGGCCATCCTGGGGGCTCGGCTG-TGTGAG 2790 Query 1522 TGGACCAGAAATGCAAGTCCTCGGCCCAGATAGACCCGACTCCCGTGATCGTCACCTCCA 1581 ||||||||||||||||| ||||| |||| || || || || || ||| ||||||||| Sbjct 2791 TGGACCAGAAATGCAAG-CCTCGCAGCAGACGGAACCCACACCGGTCATCATCACCTCCA 2849 Query 1582 ACACCAACATGTGCGCCGTGATTGACGGGAACTCAACGACCTTCGAACACCAGCAGCCGT 1641 |||||||||||| || | |||||||| ||||| | |||||| |||||||| ||||||| Sbjct 2850 ACACCAACATGTCCGTGGCCATTGACGGAAACTCGAAGACCTTTGAACACCAACAGCCGT 2909 Query 1642 TGCAAGACCGGATGTTCAAATTTGAACTCACCCGCCGTCTGGATCATGACTTTGGGAAGG 1701 | || | ||| |||||||| |||||||| || ||| ||| | ||||||||||| | Sbjct 2910 TACAGGCCCGCATGTTCAAGTTTGAACTGACTTAGCGTTTGGTGCCAGACTTTGGGAAAG 2969 Query 1702 TCACCAAGCAGGAAGTCAAAGACTTTT 1728 | || |||||||| ||||||||||||| Sbjct 2970 TGACTAAGCAGGAGGTCAAAGACTTTT 2996 Score = 351 bits (388), Expect = 3e-93 Identities = 519/725 (72%), Gaps = 24/725 (3%) Strand=Plus/Plus Query 2809 ATGGCTACAGGCAGTGGCGC---ACCAATGGCAGACAATAACGAGGGCGCCGACGGAGTG 2865 ||||||||||| | |||| ||||| || ||||| | ||| ||||| | ||| Sbjct 4130 ATGGCTACAGGAGGCAGCGCTCCACCAA--GC-GACAACATGCCGGGTGCCGATGCCGTG 4186 Query 2866 GGTAATTCCTCGGGAAATTGGCATTGCGATTCCACATGGATGGGCGACAGAGTCATCACC 2925 || | |||||||||||||||| ||||||||||| |||||||||| || || ||||| Sbjct 4187 GGGAGCTCCTCGGGAAATTGGCGTTGCGATTCCAAATGGATGGGCAACCACGTGCTCACC 4246 Query 2926 ACCAGCACCCGAACCTGGGCCCTGCCCACCTACAACAACCACCTCTACAAACAAATTTCC 2985 | |||| | ||||||| |||||||| ||||||| |||||| ||||| | || | Sbjct 4247 AAGTCCACCGGGACCTGGGTCCTGCCCAGCTACAACCACCACCAGTACAAGCGCAT--CG 4304 Query 2986 AGCCAATCAGGAGCCTCGAAC---GACAATCACTACTTTGGCTACAGCACCCCTTGGGGG 3042 | || | |||||| | | | |||||| |||| ||||| || |||||||| Sbjct 4305 ACTCACAC-GGAGCCACCAGCAATGACAATTTCTACA---GCTACTCTACTCCTTGGGGA 4360 Query 3043 TATTTTGACTTCAACAGATTCCACTGCCACTTTTCACCACGTGACTGGCAAAGACTCATC 3102 || |||||||| ||| | ||||| | |||||||||||| || |||||||| | || || Sbjct 4361 TACTTTGACTTTAACCGCTTCCAGTACCACTTTTCACCCCGAGACTGGCAGGGCTTCGTC 4420 Query 3103 AACAACAACTGGGGATTCCGACCCAAGAGACTCAACTTCAAGCTCTTTAACATTCAAGTC 3162 |||||||| ||||| |||| ||||||||||| ||||||||| || ||| | || || Sbjct 4421 AACAACAATTGGGGTATCCGGCCCAAGAGACTTTCCTTCAAGCTGTTCAACGTCCAGGTT 4480 Query 3163 AAAGAGGTCACGCAGAATGACGGTACGACGACGATTGCCAATAACCTTACCAGCACGGTT 3222 || |||||||| | | || || | ||||| || |||||||||| |||||||| | Sbjct 4481 AAGGAGGTCACTACGCAGGAGGGAGCCACGACCATCACCAATAACCTCACCAGCACCATC 4540 Query 3223 CAGGTGTTTACTGACTCGGAGTACCAGCTCCCGTACGTCCTCGGCTCGGCGCATCAAGGA 3282 ||||| ||| | ||| |||| | |||| ||||| |||| || ||| ||||| | ||| Sbjct 4541 CAGGTCTTTGCGGACGCGGACTGCCAGTTCCCGCACGTGCTAGGCAACGCGCACGAGGGA 4600 Query 3283 TGCCTCCCGCCGTTCCCAGCAGACGTCTTCATGGTGCCACAGTATGGATACCTCACCCTG 3342 || || || ||||| |||||||||| ||||| ||||| | || || || Sbjct 4601 ACGCTGCCTCCCTTCCC----GACGTCTTCACCGTGCCCCAGTACGCCGACTGCA-GCTC 4655 Query 3343 AACAACGGGAGTCAGGCAGTAGGACGCTCTTCA--TTTTACTGCCTGGAGTACTTTCCTT 3400 ||||||||| | || || ||| | || || | |||||| | |||| | | Sbjct 4656 AACAACGGGGACAAAGCCACAG--CGCGCAGCAGCTTCTGCTGCCTCGGGTACATGCGGA 4713 Query 3401 CTCAGATGCTGCGTACCGGAAACAACTTTACCTTCAGCTACACTTTTGAGGACGTTCCTT 3460 ||||||||||| ||||| ||||||| |||||| ||| ||||||||||| || | Sbjct 4714 GCCAGATGCTGCGGACCGGCAACAACTACGCCTTCATGTACCAGTTTGAGGACGTACCCT 4773 Query 3461 TCCACAGCAGCTACGCTCACAGCCAGAGTCTGGACCGTCTCATGAATCCTCTCATCGACC 3520 ||| | | ||| |||| |||||| ||||||| || ||||| || |||| |||| Sbjct 4774 CTCACTGGATGTACATGCACATCCAGAGCCTGGACCACCTGATGAAGCCGTTCATGGACC 4833 Query 3521 AGTAC 3525 ||||| Sbjct 4834 AGTAC 4838 Score = 161 bits (178), Expect = 3e-36 Identities = 303/441 (69%), Gaps = 17/441 (4%) Strand=Plus/Plus Query 2078 GTATCAGAAACTGTGCTACATTCATCATATCATGGGAAAGGTGCCAGACGCT---TGCAC 2134 |||| | || |||||| |||||||||| |||| || |||||| | || | Sbjct 3417 GTATAAAAAGCTGTGCGCAGTTCATCATATTCTGGGCCCGGCGCCAGAGGGCCAGTGTTC 3476 Query 2135 TGCCTGCGATCTGGTCAATGTGGAT----TTG---GATGACTGCATCTTTGAACAATAAA 2187 |||||| |||| | |||||| || ||| ||| |||||| ||||||| | Sbjct 3477 TGCCTGTAATCTCGCCAATGTTGACAATGTTGATCGATAACTGCAATAAAGAACAATGAT 3536 Query 2188 TGATTTAAATCAGGTATGGCTGCCGATGGTTATCTTCCAGATTGGCTCGAGGACACTCTC 2247 ||| | ||| ||| |||||||| |||||||| ||||||| ||| | ||||||||| || Sbjct 3537 TGACTCAAA-CAGATATGGCTG---ATGGTTATTTTCCAGACTGGTTGGAGGACACTTTC 3592 Query 2248 TCTGAAGGAATAAGACAGTGGTGGAAGCTCAAACCTGGCCCACCACCACCAAAGCCCGCA 2307 ||||| || | |||||| || ||| |||| | || ||| ||| Sbjct 3593 TCTGAGGGTCGGCGCCAGTGGAATAAATGCAAGGCTGGAGCGCCCAAACCGCGGCCTCAC 3652 Query 2308 GAGCGGCATAAGGACGACAGCAGGGGTCTTGTGCTTCCTGGGTACAAGTACCTCGGACCC 2367 ||| || | ||| ||| ||| || ||||| || || || || ||| | ||| Sbjct 3653 CAGCATCACCAAGACTCTTCTCGGGTTCTGGTCCTTCCGGGATATAAATATCTCAGTCCC 3712 Query 2368 TTCAACGGACTCGACAAGGGAGAGCCGGTCAACGAGGCAGACGCCGCGGCCCTCGAGCAC 2427 |||||||| || || |||||||| | |||||| ||||||||||| || || ||||| Sbjct 3713 TTCAACGGTCTGGATAAGGGAGACCTGGTCAATCGGGCAGACGCCGTCGCTCTAGAGCAT 3772 Query 2428 GACAAAGCCTACGACCGGCAGCTCGACAGCGGAGACAACCCGTACCTCAAGTACAACCAC 2487 | ||| |||| | ||||||||| ||| ||||||| | ||||||||||||||| Sbjct 3773 G---AAGGCTACAGCGAGCAGCTCGAGGCGGGACACAACCCCTCCCTCAAGTACAACCAT 3829 Query 2488 GCCGACGCGGAGTTTCAGGAG 2508 |||||| ||||| |||||| Sbjct 3830 GCCGACAGAGAGTTCCAGGAG 3850 >seq99286 Length=7566 Score = 306 bits (338), Expect = 1e-79 Identities = 534/767 (70%), Gaps = 24/767 (3%) Strand=Plus/Plus Query 2774 CACCAGCAGCCCCCTCTGGTCTGGGAACTAATACGATGGCTACAGGCAGTGGCGCACCAA 2833 || ||||||||||| | ||| | ||||||| |||||| |||| ||||| ||||| Sbjct 5612 CAGCAGCAGCCCCCGTCAATTTGGAACCTAATACAATGGCTGCAGGATGTGGCTCACCAG 5671 Query 2834 TGGCAGACAATAACGAGGGCGCCGACGGAGTGGGTAATTCCTCGGGAAATTGGCATTGCG 2893 ||| ||||| | || | |||| ||||||||| | ||| || |||||||| ||| Sbjct 5672 TGGACGACAACATGCAGTGTGCCGCCGGAGTGGGCTCTGCCTGCGGTGATTGGCATGGCG 5731 Query 2894 ATTCCACATGGATGGGCGACAGAGTCATCACCACCAGCACCCGAACCTGGGCCCTGCCCA 2953 || ||| |||||||| ||| |||| || | |||| | ||| ||| |||||||| Sbjct 5732 ATACCAGGTGGATGGGAGACCTCATCATTACAAAGTCCACCTGGACCGGGGTCCTGCCCA 5791 Query 2954 CCTACAACAACCACCTCTACAAACAAATTTCCAGC-CAATCAGGAGCCTCGAACGACAAT 3012 ||| ||||||||| |||||| | | |||| | | | | | | | ||| |||| Sbjct 5792 CCTT-AACAACCACGTCTACAGGCGGACCACCAGTTCCACCGGCATCAGC-AACAACAAC 5849 Query 3013 CACTACTTTGGCTACAGCACCCCTTGGGGG---TATTTTGACTTCAACAGATTCCACTGC 3069 ||||||||| |||||||||| | | | || |||||||||||| |||| | Sbjct 5850 ACCTACTTTGGTTACAGCACCCGAGGAGAGCTGTACTTTGACTTCAAC------CACTTC 5903 Query 3070 CACTTTTCACCACGTGACTGGCAAAGACTCATCAACAACAACTGGGGATTCCGACCCAAG 3129 ||||||||| | || |||||||| ||| |||| ||||||||||| |||| |||||| Sbjct 5904 CACTTTTCATCCCGAGACTGGCAGCATCTCGTCAATAACAACTGGGGTGTCCGGCCCAAG 5963 Query 3130 AGACTCAACTTCAAGCTCTTTAACATTCAAGTCAAAGAGGTCACG-CAGAATGACGGTAC 3188 ||||| |||||| | || | ||| ||||||| ||||||||| ||| ||| | || Sbjct 5964 TGACTCGGTTTCAAGTTATTCACCATATAAGTCAAGGAGGTCACGACAG-TCGACAGCAC 6022 Query 3189 GACGACGATTGCCAATAACCTTACCAGCACGGTTCAGGTGTTTACTG--ACTCGGAGTAC 3246 | ||| || |||||| |||| |||||||| | ||||||||| | || |||| | Sbjct 6023 AAAGACCATCGCCAATGACCTCACCAGCACCATCCAGGTGTTTGTGGACACACGGACTGT 6082 Query 3247 CAGCTCCCGTACGTCCTCGGCTCGGCGCATCAAGGATGCCTCCCGCCGTTCCCAGCAGAC 3306 | |||||||| ||| ||| || || |||| ||||| || || || || || | Sbjct 6083 CGGCTCCCGTCCGTGACTGGCAATGCCCACGAAGGGTGCCTACCCCCATTTCCGGCCTAT 6142 Query 3307 GTCTTCATGGTGCCACAGTATGGATACCTCACCCTGAACAACGGGAGTCAGGCAGT---- 3362 ||||| ||| |||| || || |||||||| || | ||||| ||| | || || Sbjct 6143 GTCTTTATGATGCCTCAATACGGATACCTGACTTTCAACAATGGGCACAATGCCGTGCCC 6202 Query 3363 AGGACGCTCTTCATTTTACTGCCTGGAGTACTTTCCTTCTCAGATGCTGCGTACCGGAAA 3422 |||| || | | || || ||||||| |||||| | ||||| | || || || Sbjct 6203 AGGA-GC---ACCTACTATTGTCTGGAGTGCTTTCCCAGAAAAATGCTAAGAACAGGCAA 6258 Query 3423 CAACTTTACCTTCAGCTACACTTTTGAGGACGTTCCTTTCCACAGCAGCTACGCTCACAG 3482 ||||||| |||| || ||| |||||||| || ||||| || | ||| ||||| Sbjct 6259 CAACTTTGCCTTTAGGTACGACTTTGAGGAGGTACCTTTTCAGTAGATGTACATACACAG 6318 Query 3483 CCAGAGTCTGGACCGTCTCATGAATCCTCTCATCGACCAGTACCTGT 3529 |||||| ||||| || ||||| || || | ||| ||||| ||| Sbjct 6319 CCAGAGCACTGACCGGCTGATGAACCCGCTGTTGGACTAGTACTTGT 6365 Score = 176 bits (194), Expect = 1e-40 Identities = 240/335 (72%), Gaps = 0/335 (0%) Strand=Plus/Plus Query 3983 ATGTCAACACACAAGGCGTTCTTCCAGGCATGGTCTGGCAGGACAGAGATGTGTACCTTC 4042 |||||||| | | | || || || |||||| |||||| || |||| | ||||| | Sbjct 6787 ATGTCAACTCTCTCAGGGTGCTGCCTGGCATGAATTGGCAGAACTGAGACATCTACCTCC 6846 Query 4043 AGGGGCCCATCTGGGCAAAGATTCCACACACGGACGGACATTTTCACCCCTCTCCCCTCA 4102 |||| | |||||||| ||| |||||||||| |||||||| ||| | | ||||| |||| Sbjct 6847 AGGGCCTGATCTGGGCCAAGGTTCCACACACTGACGGACACTTTTATCTGTCTCCTCTCA 6906 Query 4103 TGGGTGGATTCGGACTTAAACACCCTCCTCCACAGATTCTCATCAAGAACACCCCGGTAC 4162 |||| ||||| || || || | || ||||| ||||| || |||||||||||||||| Sbjct 6907 TGGGGGGATTTGGTCTCAAGAAGCCCCCTCCTCAGATCCTGGTCAAGAACACCCCGGTTA 6966 Query 4163 CTGCGAATCCTTCGACCACCTTCAGTGCGGCAAAGTTTGCTTCCTTCATCACACAGTACT 4222 |||| | ||| | |||| | ||| | ||||||||| || || Sbjct 6967 CTGCCGACCCTCCAGTGGAATTCACAAGTGACAAGCTCAACAGCTTCATCACTCAATATA 7026 Query 4223 CCACGGGACAGGTCAGCGTGGAGATCGAGTGGGAGCTGCAGAAGGAAAACAGCAAACGCT 4282 ||| ||||| || | |||||| || | |||||||||||| ||| || ||| | | Sbjct 7027 GCACTGGACAAGTAACCGTGGAAATTAAATGGGAGCTGCAGCTGGAGGACTCCAAGAGGT 7086 Query 4283 GGAATCCCGAAATTCAGTACACTTCCAACTACAAC 4317 |||| || |||||||| ||||||||||||| |||| Sbjct 7087 GGAACCCAGAAATTCAATACACTTCCAACTTCAAC 7121 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14834712330000