Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013- 09-15] 160,500 sequences; 1,926,439,238 total letters Query= NC_001701.1 Length=5106 Score E Sequences producing significant alignments: (Bits) Value seq86691 226 9e-56 seq99286 140 1e-29 >seq86691 Length=5340 Score = 226 bits (250), Expect = 9e-56 Identities = 348/491 (71%), Gaps = 13/491 (3%) Strand=Plus/Plus Query 3074 GGGTGCCGATGGAGTGGGTAATGCCTCGGGAAATTGGCATTGCGATTCCCAATGGATGGG 3133 ||||||||||| ||||| | ||||||||||||||| |||||||||| |||||||||| Sbjct 4171 GGGTGCCGATGCCGTGGGGAGCTCCTCGGGAAATTGGCGTTGCGATTCCAAATGGATGGG 4230 Query 3134 AAACACAGTCATCACAAAGACCACCAGAACCTGGGTCCTGCCAAGCTACAACAACCACAT 3193 ||| || |||| ||| ||||| | |||||||||||||| ||||||||| ||||| Sbjct 4231 CAACCACGTGCTCACCAAGTCCACCGGGACCTGGGTCCTGCCCAGCTACAACCACCACCA 4290 Query 3194 CTACAAA-GCAATTAC-CAG-CGGAACCTCTCAAGATGCAAATGTCCAGTATGCAGGATA 3250 ||||| ||| || || |||| || | ||| ||| || | ||| || Sbjct 4291 GTACAAGCGCATCGACTCACACGGAGCCACCAGCAATGACAATTTCTA-----CAGC-TA 4344 Query 3251 CAGTACCCCCTGGGGGTACTTTGATTTCAACCGCTTCCACTGCCACTTCTCCCCTAGAGA 3310 | ||| || ||||| |||||||| || ||||||||||| | |||||| || || |||| Sbjct 4345 CTCTACTCCTTGGGGATACTTTGACTTTAACCGCTTCCAGTACCACTTTTCACCCCGAGA 4404 Query 3311 CTGGCAGAGACTTATCAACAACCATTGGGGAATCAGACCCAAGTCTCTTAAATTCAAGAT 3370 ||||||| | | |||||||| ||||||| ||| | |||||| ||| |||||| | Sbjct 4405 CTGGCAGGGCTTCGTCAACAACAATTGGGGTATCCGGCCCAAGAGACTTTCCTTCAAGCT 4464 Query 3371 CTTCAATGTCCAAGTCAAAGAAGTCACAACGCAGGATCAGACAAAGACCATTGCAAACAA 3430 ||||| ||||| || || || ||||| |||||||| | | |||||| | || || Sbjct 4465 GTTCAACGTCCAGGTTAAGGAGGTCACTACGCAGGAGGGAGCCACGACCATCACCAATAA 4524 Query 3431 TCTCACCTCAACAATTCAAGTCTTTACGGATGATGAGCATCAACTCCCGTATGTCCTGGG 3490 |||||| || || || |||||| |||| | || || ||||| | || || || Sbjct 4525 CCTCACCAGCACCATCCAGGTCTTTGCGGACGCGGACTGCCAGTTCCCGCACGTGCTAGG 4584 Query 3491 CTCGGCTACGGAAGGCACCATGCCGCCGTTCCCGTCGGATGTCTATGCCCTGCCGCAGTA 3550 | || || || || |||| || ||||| || |||| || |||| ||||| Sbjct 4585 CAACGCGCACGAGGGAACGCTGCCTCCCTTCCC----GACGTCTTCACCGTGCCCCAGTA 4640 Query 3551 CGGGTACTGCA 3561 || |||||| Sbjct 4641 CGCCGACTGCA 4651 Score = 143 bits (158), Expect = 9e-31 Identities = 175/236 (74%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 1524 AACGCCATATGGCTCTACGGACCTGCCACCACCGGGAAGACCAACATTGCAGAAGCTATT 1583 |||||| | ||||||| |||||||| |||| || ||||||| | |||| | ||| | Sbjct 2573 AACGCCGTCTGGCTCTTTGGACCTGCGCCCACGGGAAAGACCAGCGTTGCGGTGTCTACT 2632 Query 1584 GCCCATGCTGTACCCTTCTATGGCTGTGTTAACTGGACTAATGAGAACTTTCCTTTTAAT 1643 || |||||||| ||||| ||||| | || |||||||| | |||||||||| | | || Sbjct 2633 GCGCATGCTGTGCCCTTTTATGGGCGCGTCAACTGGACCAGCGAGAACTTTC-TCTCCAT 2691 Query 1644 GATTGTGTTGATAAAATGCTGATTTGGTGGGAGGAGGGAAAAATGACTAATAAGGTTGTT 1703 |||||||| || || | | ||||||||||||||||||| | ||| | || || || Sbjct 2692 GATTGTGTGGACAAGACGGTGATTTGGTGGGAGGAGGGCACGATGGCGGCCAAAGTCGTG 2751 Query 1704 GAATCTGCAAAAGCAATTTTGGGAGGGTCTGCTGTCCGGGTAGACCAGAAATGTAA 1759 || || || | || || |||| || || ||||| | || ||||||||||| || Sbjct 2752 GAGTCGGCCGAGGCCATCCTGGG-GGCTCGGCTGTGTGAGTGGACCAGAAATGCAA 2806 >seq99286 Length=7566 Score = 140 bits (154), Expect = 1e-29 Identities = 467/707 (66%), Gaps = 45/707 (6%) Strand=Plus/Plus Query 3076 GTGCCGATGGAGTGGGTAATGCCTCGGGAAATTGGCATTGCGATTCCCAATGGATGGGAA 3135 |||||| |||||||| ||||| || |||||||| ||||| || ||||||||| Sbjct 5690 GTGCCGCCGGAGTGGGCTCTGCCTGCGGTGATTGGCATGGCGATACCAGGTGGATGGGAG 5749 Query 3136 ACACAGTCATCACAAAGACCACCAGAACCTGGGTCCTGCCAAGCTACAACAACCACATCT 3195 || |||| |||||| ||||| | ||| |||||||||| | || ||||||||| ||| Sbjct 5750 ACCTCATCATTACAAAGTCCACCTGGACCGGGGTCCTGCCCACCTT-AACAACCACGTCT 5808 Query 3196 ACAA----AGCA--ATTACCAGCGGAACCTCTCAAGATGCAAATGTCCAGTATGCAGGAT 3249 ||| | || | | ||| ||| | | ||| | | | | | | || | Sbjct 5809 ACAGGCGGACCACCAGTTCCACCGGCATCAG-CAACAACAACACCTACTTT-----GGTT 5862 Query 3250 ACAGTACCCCCTGGGGG---TACTTTGATTTCAACCGCTTCCACTGCCACTTCTCCCCTA 3306 |||| |||| | | | |||||||| ||||||| |||||||| ||| ||| Sbjct 5863 ACAGCACCCGAGGAGAGCTGTACTTTGACTTCAACCACTTCCACTT----TTCATCCC-- 5916 Query 3307 GAGACTGGCAGAGACTTATCAACAACCATTGGGGAATCAGACCCAAGTCTCTTAAATTCA 3366 ||||||||||| || |||| ||| | ||||| || | ||||||| || |||| Sbjct 5917 GAGACTGGCAGCATCTCGTCAATAACAACTGGGGTGTCCGGCCCAAGTGACTCGGTTTCA 5976 Query 3367 AGATCTTCAATGTCCAAGTCAAAGAAGTCACAACGCAGGATCAG-ACAAAGACCATTGCA 3425 || | |||| | ||||||| || ||||| || || ||| ||||||||||| || Sbjct 5977 AGTTATTCACCATATAAGTCAAGGAGGTCACGACAGTCGA-CAGCACAAAGACCATCGCC 6035 Query 3426 AACAATCTCACCTCAACAATTCAAGTCTTTACGGATGAT--GAGCATCAACTCCCGTATG 3483 || | |||||| || || || || ||| ||| || || ||||||| | Sbjct 6036 AATGACCTCACCAGCACCATCCAGGTGTTTGTGGACACACGGACTGTCGGCTCCCGTCCG 6095 Query 3484 TC-CTGGGCTCGGCTACGGAAGGCACCATGCCGCCGTTCCCGTCGGATGTCTATGCCCTG 3542 | |||| | | ||| | || || | || || || ||| | |||||| | || Sbjct 6096 TGACTGGCAATGCCCACGAAGGGTGCC-TACCCCCATTTCCGGCCTATGTCTTTATGATG 6154 Query 3543 CCGCAGTACGGGTACTGCACAATGCACACCAACCAGAATGGAGCACGGTTCAATGACC-G 3601 || || ||||| ||| || | |||| ||||| |||| | | || || | Sbjct 6155 CCTCAATACGGATACCTGACTTT------CAAC---AATGG-GCACAATGCCGTGCCCAG 6204 Query 3602 TAGTGCATTCTACTGCTTAGAGTACTTCCCTAGTCAGATGCTAAGAACAGGCAACAACTT 3661 || | | ||| || | |||| ||| || || | ||||||||||||||||||||||| Sbjct 6205 GAGCACCTACTATTGTCTGGAGTGCTTTCCCAGAAAAATGCTAAGAACAGGCAACAACTT 6264 Query 3662 TGAGTTCACATTTGACTTTGAAGAAGTTCCTTTCCA-TAGCATGTTC--GCTCATTCACA 3718 || || | | |||||||| || || ||||| || ||| |||| | | || || | Sbjct 6265 TGCCTTTAGGTACGACTTTGAGGAGGTACCTTTTCAGTAG-ATGTACATACACAGCCAGA 6323 Query 3719 GGACTTAGACAGGCTGATGAACCCCCTAGTGGATCAATACCTCTGGA 3765 | ||| ||| ||||||||||||| || |||| | ||| | |||| Sbjct 6324 GCACT--GACCGGCTGATGAACCCGCTGTTGGACTAGTACTTGTGGA 6368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16198713657500