Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013-
09-15] 160,500 sequences; 1,926,439,238 total letters
Query= NC_001701.1
Length=5106
Score E
Sequences producing significant alignments: (Bits) Value
seq86691 226 9e-56
seq99286 140 1e-29
>seq86691
Length=5340
Score = 226 bits (250), Expect = 9e-56
Identities = 348/491 (71%), Gaps = 13/491 (3%)
Strand=Plus/Plus
Query 3074 GGGTGCCGATGGAGTGGGTAATGCCTCGGGAAATTGGCATTGCGATTCCCAATGGATGGG 3133
||||||||||| ||||| | ||||||||||||||| |||||||||| ||||||||||
Sbjct 4171 GGGTGCCGATGCCGTGGGGAGCTCCTCGGGAAATTGGCGTTGCGATTCCAAATGGATGGG 4230
Query 3134 AAACACAGTCATCACAAAGACCACCAGAACCTGGGTCCTGCCAAGCTACAACAACCACAT 3193
||| || |||| ||| ||||| | |||||||||||||| ||||||||| |||||
Sbjct 4231 CAACCACGTGCTCACCAAGTCCACCGGGACCTGGGTCCTGCCCAGCTACAACCACCACCA 4290
Query 3194 CTACAAA-GCAATTAC-CAG-CGGAACCTCTCAAGATGCAAATGTCCAGTATGCAGGATA 3250
||||| ||| || || |||| || | ||| ||| || | ||| ||
Sbjct 4291 GTACAAGCGCATCGACTCACACGGAGCCACCAGCAATGACAATTTCTA-----CAGC-TA 4344
Query 3251 CAGTACCCCCTGGGGGTACTTTGATTTCAACCGCTTCCACTGCCACTTCTCCCCTAGAGA 3310
| ||| || ||||| |||||||| || ||||||||||| | |||||| || || ||||
Sbjct 4345 CTCTACTCCTTGGGGATACTTTGACTTTAACCGCTTCCAGTACCACTTTTCACCCCGAGA 4404
Query 3311 CTGGCAGAGACTTATCAACAACCATTGGGGAATCAGACCCAAGTCTCTTAAATTCAAGAT 3370
||||||| | | |||||||| ||||||| ||| | |||||| ||| |||||| |
Sbjct 4405 CTGGCAGGGCTTCGTCAACAACAATTGGGGTATCCGGCCCAAGAGACTTTCCTTCAAGCT 4464
Query 3371 CTTCAATGTCCAAGTCAAAGAAGTCACAACGCAGGATCAGACAAAGACCATTGCAAACAA 3430
||||| ||||| || || || ||||| |||||||| | | |||||| | || ||
Sbjct 4465 GTTCAACGTCCAGGTTAAGGAGGTCACTACGCAGGAGGGAGCCACGACCATCACCAATAA 4524
Query 3431 TCTCACCTCAACAATTCAAGTCTTTACGGATGATGAGCATCAACTCCCGTATGTCCTGGG 3490
|||||| || || || |||||| |||| | || || ||||| | || || ||
Sbjct 4525 CCTCACCAGCACCATCCAGGTCTTTGCGGACGCGGACTGCCAGTTCCCGCACGTGCTAGG 4584
Query 3491 CTCGGCTACGGAAGGCACCATGCCGCCGTTCCCGTCGGATGTCTATGCCCTGCCGCAGTA 3550
| || || || || |||| || ||||| || |||| || |||| |||||
Sbjct 4585 CAACGCGCACGAGGGAACGCTGCCTCCCTTCCC----GACGTCTTCACCGTGCCCCAGTA 4640
Query 3551 CGGGTACTGCA 3561
|| ||||||
Sbjct 4641 CGCCGACTGCA 4651
Score = 143 bits (158), Expect = 9e-31
Identities = 175/236 (74%), Gaps = 2/236 (1%)
Strand=Plus/Plus
Query 1524 AACGCCATATGGCTCTACGGACCTGCCACCACCGGGAAGACCAACATTGCAGAAGCTATT 1583
|||||| | ||||||| |||||||| |||| || ||||||| | |||| | ||| |
Sbjct 2573 AACGCCGTCTGGCTCTTTGGACCTGCGCCCACGGGAAAGACCAGCGTTGCGGTGTCTACT 2632
Query 1584 GCCCATGCTGTACCCTTCTATGGCTGTGTTAACTGGACTAATGAGAACTTTCCTTTTAAT 1643
|| |||||||| ||||| ||||| | || |||||||| | |||||||||| | | ||
Sbjct 2633 GCGCATGCTGTGCCCTTTTATGGGCGCGTCAACTGGACCAGCGAGAACTTTC-TCTCCAT 2691
Query 1644 GATTGTGTTGATAAAATGCTGATTTGGTGGGAGGAGGGAAAAATGACTAATAAGGTTGTT 1703
|||||||| || || | | ||||||||||||||||||| | ||| | || || ||
Sbjct 2692 GATTGTGTGGACAAGACGGTGATTTGGTGGGAGGAGGGCACGATGGCGGCCAAAGTCGTG 2751
Query 1704 GAATCTGCAAAAGCAATTTTGGGAGGGTCTGCTGTCCGGGTAGACCAGAAATGTAA 1759
|| || || | || || |||| || || ||||| | || ||||||||||| ||
Sbjct 2752 GAGTCGGCCGAGGCCATCCTGGG-GGCTCGGCTGTGTGAGTGGACCAGAAATGCAA 2806
>seq99286
Length=7566
Score = 140 bits (154), Expect = 1e-29
Identities = 467/707 (66%), Gaps = 45/707 (6%)
Strand=Plus/Plus
Query 3076 GTGCCGATGGAGTGGGTAATGCCTCGGGAAATTGGCATTGCGATTCCCAATGGATGGGAA 3135
|||||| |||||||| ||||| || |||||||| ||||| || |||||||||
Sbjct 5690 GTGCCGCCGGAGTGGGCTCTGCCTGCGGTGATTGGCATGGCGATACCAGGTGGATGGGAG 5749
Query 3136 ACACAGTCATCACAAAGACCACCAGAACCTGGGTCCTGCCAAGCTACAACAACCACATCT 3195
|| |||| |||||| ||||| | ||| |||||||||| | || ||||||||| |||
Sbjct 5750 ACCTCATCATTACAAAGTCCACCTGGACCGGGGTCCTGCCCACCTT-AACAACCACGTCT 5808
Query 3196 ACAA----AGCA--ATTACCAGCGGAACCTCTCAAGATGCAAATGTCCAGTATGCAGGAT 3249
||| | || | | ||| ||| | | ||| | | | | | | || |
Sbjct 5809 ACAGGCGGACCACCAGTTCCACCGGCATCAG-CAACAACAACACCTACTTT-----GGTT 5862
Query 3250 ACAGTACCCCCTGGGGG---TACTTTGATTTCAACCGCTTCCACTGCCACTTCTCCCCTA 3306
|||| |||| | | | |||||||| ||||||| |||||||| ||| |||
Sbjct 5863 ACAGCACCCGAGGAGAGCTGTACTTTGACTTCAACCACTTCCACTT----TTCATCCC-- 5916
Query 3307 GAGACTGGCAGAGACTTATCAACAACCATTGGGGAATCAGACCCAAGTCTCTTAAATTCA 3366
||||||||||| || |||| ||| | ||||| || | ||||||| || ||||
Sbjct 5917 GAGACTGGCAGCATCTCGTCAATAACAACTGGGGTGTCCGGCCCAAGTGACTCGGTTTCA 5976
Query 3367 AGATCTTCAATGTCCAAGTCAAAGAAGTCACAACGCAGGATCAG-ACAAAGACCATTGCA 3425
|| | |||| | ||||||| || ||||| || || ||| ||||||||||| ||
Sbjct 5977 AGTTATTCACCATATAAGTCAAGGAGGTCACGACAGTCGA-CAGCACAAAGACCATCGCC 6035
Query 3426 AACAATCTCACCTCAACAATTCAAGTCTTTACGGATGAT--GAGCATCAACTCCCGTATG 3483
|| | |||||| || || || || ||| ||| || || ||||||| |
Sbjct 6036 AATGACCTCACCAGCACCATCCAGGTGTTTGTGGACACACGGACTGTCGGCTCCCGTCCG 6095
Query 3484 TC-CTGGGCTCGGCTACGGAAGGCACCATGCCGCCGTTCCCGTCGGATGTCTATGCCCTG 3542
| |||| | | ||| | || || | || || || ||| | |||||| | ||
Sbjct 6096 TGACTGGCAATGCCCACGAAGGGTGCC-TACCCCCATTTCCGGCCTATGTCTTTATGATG 6154
Query 3543 CCGCAGTACGGGTACTGCACAATGCACACCAACCAGAATGGAGCACGGTTCAATGACC-G 3601
|| || ||||| ||| || | |||| ||||| |||| | | || || |
Sbjct 6155 CCTCAATACGGATACCTGACTTT------CAAC---AATGG-GCACAATGCCGTGCCCAG 6204
Query 3602 TAGTGCATTCTACTGCTTAGAGTACTTCCCTAGTCAGATGCTAAGAACAGGCAACAACTT 3661
|| | | ||| || | |||| ||| || || | |||||||||||||||||||||||
Sbjct 6205 GAGCACCTACTATTGTCTGGAGTGCTTTCCCAGAAAAATGCTAAGAACAGGCAACAACTT 6264
Query 3662 TGAGTTCACATTTGACTTTGAAGAAGTTCCTTTCCA-TAGCATGTTC--GCTCATTCACA 3718
|| || | | |||||||| || || ||||| || ||| |||| | | || || |
Sbjct 6265 TGCCTTTAGGTACGACTTTGAGGAGGTACCTTTTCAGTAG-ATGTACATACACAGCCAGA 6323
Query 3719 GGACTTAGACAGGCTGATGAACCCCCTAGTGGATCAATACCTCTGGA 3765
| ||| ||| ||||||||||||| || |||| | ||| | ||||
Sbjct 6324 GCACT--GACCGGCTGATGAACCCGCTGTTGGACTAGTACTTGTGGA 6368
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 16198713657500
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