Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013- 09-15] 160,500 sequences; 1,926,439,238 total letters Query= NC_001729.1 Length=4726 Score E Sequences producing significant alignments: (Bits) Value seq86691 351 3e-93 seq99286 302 1e-78 >seq86691 Length=5340 Score = 351 bits (388), Expect = 3e-93 Identities = 528/742 (71%), Gaps = 10/742 (1%) Strand=Plus/Plus Query 986 GTACATGGAGCTGGTCGGGTGGCTGGTGGACCGCGGGATCACGTCAGAAAAGCAATGGAT 1045 |||||||||||| || ||||||||||| ||| || |||||||| | |||| |||| Sbjct 2263 GTACATGGAGCTCGTTAACTGGCTGGTGGAGATCGGCATTACGTCAGAGA-GCAACGGAT 2321 Query 1046 TCAGGAGGACCAGGCCTCGTACATCTCCTTCAACGCCGCCTCCAACTCGCGGTCCCAGAT 1105 ||||||| | |||| || | ||||| | |||||| | | | | || | || | Sbjct 2322 TCAGGAGAAGCAGGAATCCTGTATCTCTTACAACGCGACGGGCGATGCCCGCTTGCAAAA 2381 Query 1106 CAAGGCCGCGCTGGACAATGCCTCCAAGATCATGAGCCTGACAAAGACGGCTCCGGACTA 1165 |||| | || |||||||| ||| | | ||| || ||||||| | ||||| | ||| Sbjct 2382 CAAGTCGGCTCTGGACAACGCCGGCCAAATCGTGGGCCTGACCACCACGGCCTCAGACGG 2441 Query 1166 CCTGGTGGG--CAGCAACCCGCCGGAGGACATTACCAAAAATCGGATCTACCAAATCCTG 1223 || ||| || | ||| ||||| ||| ||| | | || ||| | ||| | Sbjct 2442 CCGGGTCGGTTCCGCA--CCGCCAGAG--CATCGAGGACGACCGCATCCGCTGCATCTTT 2497 Query 1224 GAGCTGAACGGGTACGATCCGCAGTACGCGGCCTCCGTCTTCCTGGGCTGGGCGCAAAAG 1283 | || |||| | || ||| ||||| | |||||| | |||| |||| | | Sbjct 2498 CACCTCCACGGCTGCGGCCCGGCCTACGCCGGCTCCGTGGTGCTGGCCTGGTGCCGGAGA 2557 Query 1284 AAGTTCGGGAAGAGGAACACCATCTGGCTCTTTGGGCCGGCCACGACGGGTAAAACCAAC 1343 |||| || || ||||| || ||||||||||||| || || | ||||| || |||| | Sbjct 2558 AAGTCTGGCCAGCGGAACGCCGTCTGGCTCTTTGGACCTGCGCCCACGGGAAAGACCAGC 2617 Query 1344 ATCGCGGAAGCCATCGCCCACGCCGTGCCCTTCTACGGCTGCGTAAACTGGACCAATGAG 1403 | |||| | | || || || |||||||| || || |||| |||||||||| ||| Sbjct 2618 GTTGCGGTGTCTACTGCGCATGCTGTGCCCTTTTATGGGCGCGTCAACTGGACCAGCGAG 2677 Query 1404 AACTTTCCCTTCAACGATTGCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGCAAGATG 1463 ||||||| || || ||||| || ||||||| |||||| |||||||||||||||| |||| Sbjct 2678 AACTTTCTCTCCAT-GATTGTGTGGACAAGACGGTGATTTGGTGGGAGGAGGGCACGATG 2736 Query 1464 ACGGCCAAGGTCGTGGAGAGCGCCAAGGCCATTCTGGGCGGAAGCAAGGTGCGCGTGGAC 1523 ||||||| ||||||||| ||| ||||||| ||||| | | | || | |||||| Sbjct 2737 GCGGCCAAAGTCGTGGAGTCGGCCGAGGCCATCCTGGGGGCTCGGCTG-TGTGAGTGGAC 2795 Query 1524 CAAAAGTGCAAGTCATCGGCCCAGATCGAACCCACTCCCGTGATCGTCACCTCCAACACC 1583 || || |||||| | ||| |||| |||||||| || || ||| |||||||||||||| Sbjct 2796 CAGAAATGCAAGCC-TCGCAGCAGACGGAACCCACACCGGTCATCATCACCTCCAACACC 2854 Query 1584 AACATGTGCGCCGTGATTGACGGGAACAGCACCACCTTCGAGCATCAGCAGCCGCTGCAG 1643 ||||||| || | |||||||| ||| | ||||| || || || |||||| | ||| Sbjct 2855 AACATGTCCGTGGCCATTGACGGAAACTCGAAGACCTTTGAACACCAACAGCCGTTACAG 2914 Query 1644 GACCGGATGTTTGAATTTGAACTTACCCGCCGTTTGGACCATGACTTTGGGAAGGTCACC 1703 | ||| ||||| | |||||||| || ||||||| | ||||||||||| || || Sbjct 2915 GCCCGCATGTTCAAGTTTGAACTGACTTAGCGTTTGGTGCCAGACTTTGGGAAAGTGACT 2974 Query 1704 AAACAGGAAGTAAAGGACTTTT 1725 || ||||| || || ||||||| Sbjct 2975 AAGCAGGAGGTCAAAGACTTTT 2996 Score = 297 bits (328), Expect = 6e-77 Identities = 505/723 (70%), Gaps = 22/723 (3%) Strand=Plus/Plus Query 2815 ATGGCTTCAGGCGGTGGCGC---ACCAATGGCAGACAATAACGAGGGTGCCGATGGAGTG 2871 |||||| |||| || |||| ||||| || ||||| | ||||||||||| ||| Sbjct 4130 ATGGCTACAGGAGGCAGCGCTCCACCAA--GC-GACAACATGCCGGGTGCCGATGCCGTG 4186 Query 2872 GGTAATTCCTCAGGAAATTGGCATTGCGATTCCCAATGGCTGGGCGACAGAGTCATCACC 2931 || | ||||| |||||||||| |||||||||| ||||| ||||| || || ||||| Sbjct 4187 GGGAGCTCCTCGGGAAATTGGCGTTGCGATTCCAAATGGATGGGCAACCACGTGCTCACC 4246 Query 2932 ACCAGCACCAGAACCTGGGCCCTGCCCACTTACAACAACCATCTCTACAAGCAAATCTCC 2991 | |||| | ||||||| |||||||| |||||| |||| | ||||||| ||| | Sbjct 4247 AAGTCCACCGGGACCTGGGTCCTGCCCAGCTACAACCACCACCAGTACAAGCGCATCGAC 4306 Query 2992 AGCCAATCAGGAGCTTCAAACGACAACCACTACTTTGGCTACAGCACCCCTTGGGGGTAT 3051 || ||||| | | | | || | | || ||||| || |||||||| || Sbjct 4307 TCACAC---GGAGCCACCAGCAATGACAATTTCTACAGCTACTCTACTCCTTGGGGATAC 4363 Query 3052 TTTGACTTTAACAGATTCCACTGCCACTTCTCACCACGTGACTGGCAGCGACTCATTAAC 3111 |||||||||||| | ||||| | |||||| ||||| || ||||||||| | || | ||| Sbjct 4364 TTTGACTTTAACCGCTTCCAGTACCACTTTTCACCCCGAGACTGGCAGGGCTTCGTCAAC 4423 Query 3112 AACAACTGGGGATTCCGGCCCAAGAAACTCAGCTTCAAGCTCTTCAACATCCAAGTTAGA 3171 ||||| ||||| |||||||||||| ||| ||||||||| |||||| |||| |||| Sbjct 4424 AACAATTGGGGTATCCGGCCCAAGAGACTTTCCTTCAAGCTGTTCAACGTCCAGGTTAAG 4483 Query 3172 GGGGTCACGCAGAACGATGGCACGACGACTATTGCCAATAACCTTACCAGCACGGTTCAA 3231 | |||||| | | || || | ||||| || |||||||||| |||||||| | || Sbjct 4484 GAGGTCACTACGCAGGAGGGAGCCACGACCATCACCAATAACCTCACCAGCACCATCCAG 4543 Query 3232 GTGTTTACGGACTCGGAGTATCAGCTCCCGTACGTGCTCGGGTCGGCGCACCAAGGCTGT 3291 || ||| ||||| |||| | ||| ||||| ||||||| || |||||| | || Sbjct 4544 GTCTTTGCGGACGCGGACTGCCAGTTCCCGCACGTGCTAGGCAACGCGCACGAGGGAACG 4603 Query 3292 CTCCCGCCGTTTCCAGCGGACGTCTTCATGGTCCCTCAGTATGGATACCTCACCCTGAAC 3351 || || || || || |||||||||| || || ||||| | || || || ||| Sbjct 4604 CTGCCTCCCTTCCC----GACGTCTTCACCGTGCCCCAGTACGCCGACTGCA-GCTCAAC 4658 Query 3352 AACGGAAGTCAAGCGGTGGGACGCTCATC--CTTTTACTGCCTGGAGTACTTCCCTTCGC 3409 ||||| |||| | ||| || | ||| | |||||| | |||| | | | Sbjct 4659 AACGGGGACAAAGCCACAG--CGCGCAGCAGCTTCTGCTGCCTCGGGTACATGCGGAGCC 4716 Query 3410 AGATGCTAAGGACTGGAAATAACTTCCAATTCAGCTATACC--TTCGAGGATGTACCTTT 3467 ||||||| |||| || || |||| | |||| | |||| || ||||| ||||| | Sbjct 4717 AGATGCTGCGGACCGGCAACAACTACGCCTTCA--TGTACCAGTTTGAGGACGTACCCTC 4774 Query 3468 TCACAGCAGCTACGCTCACAGCCAGAGTTTGGATCGCTTGATGAATCCTCTTATTGATCA 3527 |||| | | ||| |||| |||||| |||| | | ||||||| || | || || || Sbjct 4775 TCACTGGATGTACATGCACATCCAGAGCCTGGACCACCTGATGAAGCCGTTCATGGACCA 4834 Query 3528 GTA 3530 ||| Sbjct 4835 GTA 4837 Score = 156 bits (172), Expect = 1e-34 Identities = 303/442 (69%), Gaps = 18/442 (4%) Strand=Plus/Plus Query 2082 TATCAGAAACTGTGTCCAATTCATCATATCCTGGGAAGGGCACCCGAGATTGCC--TGTT 2139 ||| | || ||||| || |||||||||| ||||| ||| || ||| ||| |||| Sbjct 3418 TATAAAAAGCTGTGCGCAGTTCATCATATTCTGGGCCCGGCGCCAGAGG--GCCAGTGTT 3475 Query 2140 CGGCCTGCGATTTGGCCAATGTGGAC----TTG---GATGACTGTGTTTCTGAGCAATAA 2192 | ||||| || | |||||||| ||| ||| ||| |||| | || |||| | Sbjct 3476 CTGCCTGTAATCTCGCCAATGTTGACAATGTTGATCGATAACTGCAATAAAGAACAATGA 3535 Query 2193 ATGACTTAAACCAGGTATGGCTGCTGACGGTTATCTTCCAGATTGGCTCGAGGACAACCT 2252 ||||| |||| || |||||||| || ||||| ||||||| ||| | ||||||| | Sbjct 3536 TTGACTCAAAC-AGATATGGCTGATG---GTTATTTTCCAGACTGGTTGGAGGACACTTT 3591 Query 2253 TTCTGAAGGCATTCGTGAGTGGTGGGCTCTGAAACCTGGAGTCCCTCAACCCAAAGCGAA 2312 ||||| || || ||||| || |||||| || |||| | | Sbjct 3592 CTCTGAGGGTCGGCGCCAGTGGAATAAATGCAAGGCTGGAGCGCCCAAACCGCGGCCTCA 3651 Query 2313 CCAACAACACCAGGACAACCGTCGGGGTCTTGTGCTTCCGGGTTACAAATACCTCGGACC 2372 ||| || ||||| ||| ||||| ||| || |||||||| || ||||| ||| | || Sbjct 3652 CCAGCATCACCAAGACTCTTCTCGGGTTCTGGTCCTTCCGGGATATAAATATCTCAGTCC 3711 Query 2373 CGGTAACGGACTCGACAAAGGAGAGCCGGTCAACGAGGCGGACGCGGCAGCCCTCGAACA 2432 | ||||| || || || ||||| | |||||| ||| ||||| | || || || || Sbjct 3712 CTTCAACGGTCTGGATAAGGGAGACCTGGTCAATCGGGCAGACGCCGTCGCTCTAGAGCA 3771 Query 2433 CGACAAAGCTTACGACCAGCAGCTCAAGGCCGGTGACAACCCGTACCTCAAGTACAACCA 2492 || || ||| | |||||||| |||| || ||||||| | ||||||||||||||| Sbjct 3772 TGA---AGGCTACAGCGAGCAGCTCGAGGCGGGACACAACCCCTCCCTCAAGTACAACCA 3828 Query 2493 CGCCGACGCCGAGTTTCAGGAG 2514 |||||| ||||| |||||| Sbjct 3829 TGCCGACAGAGAGTTCCAGGAG 3850 >seq99286 Length=7566 Score = 302 bits (334), Expect = 1e-78 Identities = 524/750 (70%), Gaps = 24/750 (3%) Strand=Plus/Plus Query 2780 CACCAGCAGCCCCCACAAGTTTGGGATCTAATACAATGGCTTCAGGCGGTGGCGCACCAA 2839 || ||||||||||| | ||||| | |||||||||||||| |||| ||||| ||||| Sbjct 5612 CAGCAGCAGCCCCCGTCAATTTGGAACCTAATACAATGGCTGCAGGATGTGGCTCACCAG 5671 Query 2840 TGGCAGACAATAACGAGGGTGCCGATGGAGTGGGTAATTCCTCAGGAAATTGGCATTGCG 2899 ||| ||||| | || |||||| |||||||| | ||| || |||||||| ||| Sbjct 5672 TGGACGACAACATGCAGTGTGCCGCCGGAGTGGGCTCTGCCTGCGGTGATTGGCATGGCG 5731 Query 2900 ATTCCCAATGGCTGGGCGACAGAGTCATCACCACCAGCACCAGAACCTGGGCCCTGCCCA 2959 || || ||| |||| ||| |||| || | |||| | ||| ||| |||||||| Sbjct 5732 ATACCAGGTGGATGGGAGACCTCATCATTACAAAGTCCACCTGGACCGGGGTCCTGCCCA 5791 Query 2960 CTTACAACAACCATCTCTACAAGCAAATCTCCAG--CCAATCAGGAGCTTCA--AACGAC 3015 | | |||||||| |||||| || | | |||| ||| | || | ||| ||| || Sbjct 5792 CCTT-AACAACCACGTCTACAGGCGGACCACCAGTTCCA--CCGG--CATCAGCAACAAC 5846 Query 3016 AACCACTACTTTGGCTACAGCACCCCTTGGGGG---TATTTTGACTTTAACAGATTCCAC 3072 ||| ||||||||| |||||||||| | | | || |||||||| ||| ||| Sbjct 5847 AACACCTACTTTGGTTACAGCACCCGAGGAGAGCTGTACTTTGACTTCAAC------CAC 5900 Query 3073 TGCCACTTCTCACCACGTGACTGGCAGCGACTCATTAACAACAACTGGGGATTCCGGCCC 3132 | |||||| ||| | || |||||||||| ||| | || ||||||||||| |||||||| Sbjct 5901 TTCCACTTTTCATCCCGAGACTGGCAGCATCTCGTCAATAACAACTGGGGTGTCCGGCCC 5960 Query 3133 AAGAAACTCAGCTTCAAGCTCTTCAACATCCAAGTTAGAGGGGTCACG-CAGAACGATGG 3191 ||| |||| | |||||| | |||| ||| |||| | | ||||||| ||| ||| | Sbjct 5961 AAGTGACTCGGTTTCAAGTTATTCACCATATAAGTCAAGGAGGTCACGACAG-TCGACAG 6019 Query 3192 CACGACGACTATTGCCAATAACCTTACCAGCACGGTTCAAGTGTTTACGG--ACTCGGAG 3249 ||| | ||| || |||||| |||| |||||||| | || |||||| || || |||| Sbjct 6020 CACAAAGACCATCGCCAATGACCTCACCAGCACCATCCAGGTGTTTGTGGACACACGGAC 6079 Query 3250 TATCAGCTCCCGTACGTGCTCGGGTCGGCGCACCAAGGCTGTCTCCCGCCGTTTCCAGCG 3309 | || |||||||| |||| || || ||| |||| || || || || ||||| || Sbjct 6080 TGTCGGCTCCCGTCCGTGACTGGCAATGCCCACGAAGGGTGCCTACCCCCATTTCCGGCC 6139 Query 3310 GACGTCTTCATGGTCCCTCAGTATGGATACCTCACCCTGAACAACGGAAGTCAAGCGGTG 3369 | ||||| ||| | ||||| || |||||||| || | ||||| || | || ||| Sbjct 6140 TATGTCTTTATGATGCCTCAATACGGATACCTGACTTTCAACAATGGGCACAATGCCGTG 6199 Query 3370 -GGACGCTCATCCTTTTACTGCCTGGAGTACTTCCCTTCGCAGATGCTAAGGACTGGAAA 3428 | | || ||| || || ||||||| ||| || | |||||||| || || || Sbjct 6200 CCCAGGAGCA-CCTACTATTGTCTGGAGTGCTTTCCCAGAAAAATGCTAAGAACAGGCAA 6258 Query 3429 TAACTTCCAATTCAGCTATACCTTCGAGGATGTACCTTTTCACAGCAGCTACGCTCACAG 3488 ||||| || || || ||| ||||| ||||||||||| | ||| ||||| Sbjct 6259 CAACTTTGCCTTTAGGTACGACTTTGAGGAGGTACCTTTTCAGTAGATGTACATACACAG 6318 Query 3489 CCAGAGTTTGGATCGCTTGATGAATCCTCT 3518 |||||| || || ||||||| || || Sbjct 6319 CCAGAGCACTGACCGGCTGATGAACCCGCT 6348 Score = 168 bits (186), Expect = 2e-38 Identities = 254/353 (72%), Gaps = 10/353 (3%) Strand=Plus/Plus Query 3979 CCCACGACTGGA-ACTGTCAA-TCA-TCAGGGGGCCTTACCTGGCATGGTGTGGCAAGAT 4035 ||||| | |||| | |||||| || |||||| || | ||||||||| ||||| | Sbjct 6774 CCCAC-AGTGGAGAATGTCAACTCTCTCAGGGTGC--TGCCTGGCATGAATTGGCAGAAC 6830 Query 4036 CGTGACGTGTACCTTCAAGGACCTATCTGGGCAAAGATTCCTCACACGGATGGACACTTT 4095 | ||| | ||||| || || | |||||||| ||| |||| ||||| || ||||||||| Sbjct 6831 TGAGACATCTACCTCCAGGGCCTGATCTGGGCCAAGGTTCCACACACTGACGGACACTTT 6890 Query 4096 CATCCTTCTCCTCTGATGGGAGGCTTTGGACTGAAACATCCGCCTCCTCAAATCATGATC 4155 ||| |||||||| ||||| || ||||| || || | || |||||||| ||| || || Sbjct 6891 TATCTGTCTCCTCTCATGGGGGGATTTGGTCTCAAGAAGCCCCCTCCTCAGATCCTGGTC 6950 Query 4156 AAAAATACTCCGGTACCGGCAAATCCTCCGACGACTTTCAGCCCGGCCAAGTTTGCTTCA 4215 || || || ||||| | || | ||||| | |||| | |||| | | || Sbjct 6951 AAGAACACCCCGGTTACTGCCGACCCTCCAGTGGAATTCACAAGTGACAAGCT--CAACA 7008 Query 4216 --TTTATCACTCAGTACTCCACTGGACAGGTCAGCGTGGAAATTGAGTGGGAGCTACAGA 4273 || |||||||| || ||||||||| || | |||||||||| | |||||||| ||| Sbjct 7009 GCTTCATCACTCAATATAGCACTGGACAAGTAACCGTGGAAATTAAATGGGAGCTGCAGC 7068 Query 4274 AAGAAAACAGCAAACGTTGGAATCCAGAGATTCAGTACACTTCCAACTACAAC 4326 || || ||| | ||||| ||||| ||||| ||||||||||||| |||| Sbjct 7069 TGGAGGACTCCAAGAGGTGGAACCCAGAAATTCAATACACTTCCAACTTCAAC 7121 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14984848307500