Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013- 09-15] 160,500 sequences; 1,926,439,238 total letters Query= NC_001829.1 Length=4767 Score E Sequences producing significant alignments: (Bits) Value seq86691 398 2e-107 seq99286 217 4e-53 >seq86691 Length=5340 Score = 398 bits (440), Expect = 2e-107 Identities = 578/801 (72%), Gaps = 18/801 (2%) Strand=Plus/Plus Query 1040 GTACATGGAGCTGGTCGGGTGGCTGGTGGACCGCGGGATCACGTCAGAAAAGCAATGGAT 1099 |||||||||||| || ||||||||||| ||| || |||||||| | |||| |||| Sbjct 2263 GTACATGGAGCTCGTTAACTGGCTGGTGGAGATCGGCATTACGTCAGAGA-GCAACGGAT 2321 Query 1100 CCAGGAGGACCAGGCGTCCTACATCTCCTTCAACGCCGCCTCCAACTCGCGGTCACAAAT 1159 |||||| | |||| |||| ||||| | |||||| | | | | || | |||| Sbjct 2322 TCAGGAGAAGCAGGAATCCTGTATCTCTTACAACGCGACGGGCGATGCCCGCTTGCAAAA 2381 Query 1160 CAAGGCCGCGCTGGACAATGCCTCCAAAATCATGAGCCTGACAAAGACGGCTCCGGACTA 1219 |||| | || |||||||| ||| | ||||| || ||||||| | ||||| | ||| Sbjct 2382 CAAGTCGGCTCTGGACAACGCCGGCCAAATCGTGGGCCTGACCACCACGGCCTCAGACGG 2441 Query 1220 CCTGGTGGGC-CAGAACCCGCCGGAGGACATTTCCAGCA--ACCGCATCTACCGAATCCT 1276 || ||| || | | ||| ||| ||| | || || | |||||||| | | ||| | Sbjct 2442 CCGGGTCGGTTCCGCACC-GCCAGAGCA----TCGAGGACGACCGCATCCGCTGCATCTT 2496 Query 1277 CGAGATGAACGGGTACGATCCGCAGTACGCGGCCTCCGTCTTCCTGGGCTGGGCGCAAAA 1336 | | |||| | || ||| ||||| | |||||| | |||| |||| | | Sbjct 2497 TCACCTCCACGGCTGCGGCCCGGCCTACGCCGGCTCCGTGGTGCTGGCCTGGTGCCGGAG 2556 Query 1337 GAAGTTCGGGAAGAGGAACACCATCTGGCTCTTTGGGCCGGCCACGACGGGTAAAACCAA 1396 |||| || || ||||| || ||||||||||||| || || | ||||| || |||| Sbjct 2557 AAAGTCTGGCCAGCGGAACGCCGTCTGGCTCTTTGGACCTGCGCCCACGGGAAAGACCAG 2616 Query 1397 CATCGCGGAAGCCATCGCCCACGCCGTGCCCTTCTACGGCTGCGTGAACTGGACCAATGA 1456 | | |||| | | || || || |||||||| || || |||| |||||||||| || Sbjct 2617 CGTTGCGGTGTCTACTGCGCATGCTGTGCCCTTTTATGGGCGCGTCAACTGGACCAGCGA 2676 Query 1457 GAACTTTCCGTTCAACGATTGCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGCAAGAT 1516 |||||||| | || ||||| || ||||||| |||||| |||||||||||||||| ||| Sbjct 2677 GAACTTTCTCTCCAT-GATTGTGTGGACAAGACGGTGATTTGGTGGGAGGAGGGCACGAT 2735 Query 1517 GACGGCCAAGGTCGTAGAGAGCGCCAAGGCCATCCTGGGCGGAAGCAAGGTGCGCGTGGA 1576 | ||||||| ||||| ||| ||| ||||||||||||| | | | || | ||||| Sbjct 2736 GGCGGCCAAAGTCGTGGAGTCGGCCGAGGCCATCCTGGGGGCTCGGCTG-TGTGAGTGGA 2794 Query 1577 CCAAAAGTGCAAGTCATCGGCCCAGATCGACCCAACTCCCGTGATCGTCACCTCCAACAC 1636 ||| || |||||| | ||| |||| || || || || || ||| ||||||||||||| Sbjct 2795 CCAGAAATGCAAGCC-TCGCAGCAGACGGAACCCACACCGGTCATCATCACCTCCAACAC 2853 Query 1637 CAACATGTGCGCGGTCATCGACGGAAACTCGACCACCTTCGAGCACCAACAACCACTCCA 1696 |||||||| || || ||| ||||||||||||| ||||| || |||||||| || | || Sbjct 2854 CAACATGTCCGTGGCCATTGACGGAAACTCGAAGACCTTTGAACACCAACAGCCGTTACA 2913 Query 1697 GGACCGGATGTTCAAGTTCGAGCTCACCAAGCGCCTGGAGCACGACTTTGGCAAGGTCAC 1756 || ||| ||||||||||| || || || |||| ||| || |||||||| || || || Sbjct 2914 GGCCCGCATGTTCAAGTTTGAACTGACTTAGCGTTTGGTGCCAGACTTTGGGAAAGTGAC 2973 Query 1757 CAAGCAGGAAGTCAAAGACTTTTTCCGGTGGGCGTCAGATCACGTG-ACCGAGGTGACTC 1815 |||||||| ||||||||||||| | | || |||| | ||| | | || ||| ||| Sbjct 2974 TAAGCAGGAGGTCAAAGACTTTTGCTTG-GGCCGTC-GCCAACGAGCATCG-GGT--CTC 3028 Query 1816 ACGAGTTTTACGTCAGAAAGG 1836 ||||||||| || || |||| Sbjct 3029 ACGAGTTTTTTGTGAGGAAGG 3049 Score = 311 bits (344), Expect = 3e-81 Identities = 486/684 (71%), Gaps = 26/684 (4%) Strand=Plus/Plus Query 2890 GGTGCCGATGGAGTGGGTAATGCCTCGGGTGATTGGCATTGCGATTCCACCTGGTCTGAG 2949 |||||||||| ||||| | ||||||| |||||| ||||||||||| ||| | Sbjct 4172 GGTGCCGATGCCGTGGGGAGCTCCTCGGGAAATTGGCGTTGCGATTCCAAATGGATGGGC 4231 Query 2950 GGCCACGTCACGACCACCAGCACCAGAACCTGGGTCTTGCCCACCTACAACAACCACCTC 3009 |||||| |||| |||| | ||||||||| |||||| ||||||| |||||| Sbjct 4232 AACCACGTGCTCACCAAGTCCACCGGGACCTGGGTCCTGCCCAGCTACAACCACCACCAG 4291 Query 3010 TACAAGCG-----ACTCGGAGAGAGCCTGCAGTCCA--ACACCTACAACGGATTCTCCAC 3062 |||||||| |||| | ||||| ||| | | ||| | | || | | ||| || Sbjct 4292 TACAAGCGCATCGACTCACACGGAGCCACCAG-CAATGACAATTTCTACAGCTACTCTAC 4350 Query 3063 CCCCTGGGGATACTTTGACTTCAACCGCTTCCACTGCCACTTCTCACCACGTGACTGGCA 3122 || ||||||||||||||||| ||||||||||| | |||||| ||||| || |||||||| Sbjct 4351 TCCTTGGGGATACTTTGACTTTAACCGCTTCCAGTACCACTTTTCACCCCGAGACTGGCA 4410 Query 3123 GCGACTCATCAACAACAACTGGGGCATGCGACCCAA-AGCCATGCGGGTCAAAATCTTCA 3181 | | || |||||||||| ||||| || || ||||| || | | | |||| | |||| Sbjct 4411 GGGCTTCGTCAACAACAATTGGGGTATCCGGCCCAAGAGACTTTC-CTTCAAGCTGTTCA 4469 Query 3182 ACATCCAGGTCAAGGAGGTCACGACGTCGAACGGCGAGACAACGGTGGCTAATAACCTTA 3241 || ||||||| ||||||||||| ||| | | || | || || | | |||||||| | Sbjct 4470 ACGTCCAGGTTAAGGAGGTCACTACGCAGGAGGGAGCCACGACCATCACCAATAACCTCA 4529 Query 3242 CCAGCACGGTTCAGATCTTTGCGGACTCGTCGTACGAACTGCCGTACGTGAT-GGATGCG 3300 ||||||| | ||| ||||||||||| || | | | | ||| ||||| | || || Sbjct 4530 CCAGCACCATCCAGGTCTTTGCGGACGCGGACTGCCAGTTCCCGCACGTGCTAGGCAACG 4589 Query 3301 GGTCAAGAGGGCAGCCTGCCTCCTTTTCCCAACGACGTCTTTATGGTGCCCCAGTACGGC 3360 | || ||||| | |||||||| || | ||||||||| | ||||||||||||| | Sbjct 4590 CG-CACGAGGGAACGCTGCCTCCCTTCC----CGACGTCTTCACCGTGCCCCAGTACGCC 4644 Query 3361 TACTGTGGACTGGTGACCGGCAACACTTCGCAGCAACAGACTGACAGAAATGCCTTCTAC 3420 |||| | || | ||| ||| ||| |||| | ||| | ||||| | Sbjct 4645 GACTGCAG-CTCAACAACGGGGACA-----AAGCCACAG-CGCGCAGCA---GCTTCTGC 4694 Query 3421 TGCCTGGAGTACTTTCCTTCGCAGATGCTGCGGACTGGCAACAACTTTGAAATTACGTAC 3480 ||||| | |||| | | |||||||||||||| |||||||||| | | | |||| Sbjct 4695 TGCCTCGGGTACATGCGGAGCCAGATGCTGCGGACCGGCAACAACTACGCCTTCATGTAC 4754 Query 3481 AGTTTTGAGAAGGTGCCTTTCCACTCGATGTACGCGCACAGCCAGAGCCTGGACCGGCTG 3540 |||||| | || || | |||| ||||||| ||||| |||||||||||||| ||| Sbjct 4755 CAGTTTGAGGACGTACCCTCTCACTGGATGTACATGCACATCCAGAGCCTGGACCACCTG 4814 Query 3541 ATGAACCCTCTCATCGACCAGTAC 3564 ||||| || |||| ||||||||| Sbjct 4815 ATGAAGCCGTTCATGGACCAGTAC 4838 Score = 194 bits (214), Expect = 5e-46 Identities = 313/441 (71%), Gaps = 17/441 (4%) Strand=Plus/Plus Query 2132 GTATCAGAAACTGTGTCCGATTCATCACATCATGGGGAGGGCGCCCGAGGTGGCC--TGC 2189 |||| | || ||||| | ||||||| || |||| |||||| |||| ||| || Sbjct 3417 GTATAAAAAGCTGTGCGCAGTTCATCATATTCTGGGCCCGGCGCCAGAGG--GCCAGTGT 3474 Query 2190 TCGGCCTGCGAACTGGCCAATGTGGAC----TTG---GATGACTGTGACATGGAACAATA 2242 || ||||| | || |||||||| ||| ||| ||| |||| | | ||||||| Sbjct 3475 TCTGCCTGTAATCTCGCCAATGTTGACAATGTTGATCGATAACTGCAATAAAGAACAATG 3534 Query 2243 AATGACTCAAACCAGATATGACTGACGGTTACCTTCCAGATTGGCTAGAGGACAACCTCT 2302 | |||||||||| ||||||| |||| ||||| ||||||| ||| | ||||||| ||| Sbjct 3535 ATTGACTCAAAC-AGATATGGCTGATGGTTATTTTCCAGACTGGTTGGAGGACACTTTCT 3593 Query 2303 CTGAAGGCGTTCGAGAGTGGTGGGCGCTGCAAC-CTGGAGCCCCTAAACCCAAGGCAAAT 2361 |||| || || ||||| ||||| ||||||| || ||||| | | | Sbjct 3594 CTGAGGGTCGGCGCCAGTGGAATAAA-TGCAAGGCTGGAGCGCCCAAACCGCGGCCTCAC 3652 Query 2362 CAACAACATCAGGACAACGCTCGGGGTCTTGTGCTTCCGGGTTACAAATACCTCGGACCC 2421 || || || || ||| |||||| ||| || |||||||| || ||||| ||| | ||| Sbjct 3653 CAGCATCACCAAGACTCTTCTCGGGTTCTGGTCCTTCCGGGATATAAATATCTCAGTCCC 3712 Query 2422 GGCAACGGACTCGACAAGGGGGAACCCGTCAACGCAGCGGACGCGGCAGCCCTCGAGCAC 2481 |||||| || || ||||| || | ||||| || ||||| | || || ||||| Sbjct 3713 TTCAACGGTCTGGATAAGGGAGACCTGGTCAATCGGGCAGACGCCGTCGCTCTAGAGCAT 3772 Query 2482 GACAAGGCCTACGACCAGCAGCTCAAGGCCGGTGACAACCCCTACCTCAAGTACAACCAC 2541 || |||| ||| | |||||||| |||| || ||||||||| ||||||||||||||| Sbjct 3773 GA--AGGC-TACAGCGAGCAGCTCGAGGCGGGACACAACCCCTCCCTCAAGTACAACCAT 3829 Query 2542 GCCGACGCGGAGTTCCAGCAG 2562 |||||| ||||||||| || Sbjct 3830 GCCGACAGAGAGTTCCAGGAG 3850 >seq99286 Length=7566 Score = 217 bits (240), Expect = 4e-53 Identities = 480/706 (68%), Gaps = 54/706 (8%) Strand=Plus/Plus Query 2891 GTGCCGATGGAGTGGGTAATGCCTCGGGTGATTGGCATTGCGATTCCACCTGGTCTGAGG 2950 |||||| |||||||| ||||| |||||||||||| ||||| ||| ||| | | Sbjct 5690 GTGCCGCCGGAGTGGGCTCTGCCTGCGGTGATTGGCATGGCGATACCAGGTGGATGGGAG 5749 Query 2951 GCCACGTCACGACCACCAGCACCAGAACCTGGGTCTTGCCCACCTACAACAACCACCTCT 3010 || | ||| || | |||| | ||| ||||| ||||||||| ||||||||| ||| Sbjct 5750 ACCTCATCATTACAAAGTCCACCTGGACCGGGGTCCTGCCCACCTT-AACAACCACGTCT 5808 Query 3011 ACAAGCG-ACTCGGAG----AGAGCCTGCAGTC----CAACACCTACAACGGATTCTCCA 3061 ||| ||| || || | | | ||| |||||||||| || | | || Sbjct 5809 ACAGGCGGACCACCAGTTCCACCGGCATCAGCAACAACAACACCTACTTTGGTTACAGCA 5868 Query 3062 CCCCCTGGGGA----TACTTTGACTTCAACCGCTTCCACTGCCACTTCTCACCACGTGAC 3117 ||| || || |||||||||||||||| |||||||| | ||| | || ||| Sbjct 5869 CCCGA-GGAGAGCTGTACTTTGACTTCAACCACTTCCACT------TTTCATCCCGAGAC 5921 Query 3118 TGGCAGCGACTCATCAACAACAACTGGGGCATGCGACCCAAAGCCATGCGG-GTCAAAAT 3176 ||||||| ||| |||| ||||||||||| | || ||| ||| | ||| |||| | Sbjct 5922 TGGCAGCATCTCGTCAATAACAACTGGGGTGTCCGGCCC-AAGTGACTCGGTTTCAAGTT 5980 Query 3177 CTTCAACATCCAGGTCAAGGAGGTCACGAC-GTCGAACGGCGAGACAACGGTGGCTAATA 3235 |||| ||| | ||||||||||||||||| |||| || || | || | || ||| Sbjct 5981 ATTCACCATATAAGTCAAGGAGGTCACGACAGTCG-ACAGCACAAAGACCATCGCCAATG 6039 Query 3236 ACCTTACCAGCACGGTTCAGATCTTTGCGGACTCGTCGTACGAACTG-------CCGTAC 3288 |||| |||||||| | ||| | |||| |||| | ||| |||| |||| | Sbjct 6040 ACCTCACCAGCACCATCCAGGTGTTTGTGGACAC-----ACGGACTGTCGGCTCCCGTCC 6094 Query 3289 GTGA-TGG--ATGCGGGTCAAGAGGGCAGCCTGCCTCCTTTTCCCAACGACGTCTTTATG 3345 |||| ||| |||| || || || |||| || || ||||| | | ||||||||| Sbjct 6095 GTGACTGGCAATGC---CCACGAAGGGTGCCTACCCCCATTTCCGGCCTATGTCTTTATG 6151 Query 3346 GTGCCCCAGTACGGCTACTGTGGACTGGTGACCGGCAACACTTCGCAGCAACAGACTG-A 3404 |||| || ||||| ||| |||| ||||| | ||| ||| || Sbjct 6152 ATGCCTCAATACGGATAC---------CTGACTTTCAACAATGGGCA-CAATGCCGTGCC 6201 Query 3405 CAGAAATGCCTTCTACTGCCTGGAGTACTTTCCTTCGCAGATGCTGCGGACTGGCAACAA 3464 ||| | ||| ||| || ||||||| |||||| | ||||| | || |||||||| Sbjct 6202 CAGGAGCACCTACTATTGTCTGGAGTGCTTTCCCAGAAAAATGCTAAGAACAGGCAACAA 6261 Query 3465 CTTTGAAATTACGTACAGTTTTGAGAAGGTGCCTTTCCACTCGATGTACGCGCACAGCCA 3524 ||||| ||| |||| |||||| |||| ||||| || | ||||||| |||||||| Sbjct 6262 CTTTGCCTTTAGGTACGACTTTGAGGAGGTACCTTTTCAGTAGATGTACATACACAGCCA 6321 Query 3525 GAGCCTGGACCGGCTGATGAACCCTCTCATCGACCAGTACCTGTGG 3570 |||| ||||||||||||||||| || | ||| ||||| ||||| Sbjct 6322 GAGCACTGACCGGCTGATGAACCCGCTGTTGGACTAGTACTTGTGG 6367 Score = 197 bits (218), Expect = 4e-47 Identities = 315/454 (69%), Gaps = 20/454 (4%) Strand=Plus/Plus Query 2235 GAACAATAAATGACTCAAACCAGATATGACTGACGGTTACCTTCCAGATTGGCTAGAGGA 2294 |||| || | ||||||||| ||| | | |||| ||||| |||| |||| | ||||| Sbjct 5069 GAACCATGATGGACTCAAAC-AGACACGGCTGATGGTTATTTTCCGGATTAATTGGAGGA 5127 Query 2295 CAACCTCTCTGAAGGCGTTCGAGAGTGGTGGGCGCTGCAACCTGGAGCCCCTAAACCCAA 2354 | ||| ||||||||| || | || |||| ||| || ||||| | Sbjct 5128 TACCCTTTCTGAAGGCTTTTGCGACTGGT----------------AGCACCCAAACCGAG 5171 Query 2355 GGCAAATCAACAACATCAGGACAACGCTCGGGGTCTTGTGCTTCCGGGTTACAAATACCT 2414 | | || || ||||| || ||| ||||||||||| || ||||| || | ||||| || Sbjct 5172 GCCTAACCAGCAACAGCAAGACTCTGCTCGGGGTCTGGTCCTTCCAGGATGTAAATATCT 5231 Query 2415 CGGACCCGGCAACGGACTCGACAAGGGGGAACCCGTCAACGCAGCGGACGCGGCAGCCCT 2474 ||| ||| |||||| ||||| || || | | || ||| ||| ||| | | |||| Sbjct 5232 CGGTCCCCTCAACGGTCTCGATAAAGGAGGCGCGGTTAACAGAGCAGACACCACTGCCCG 5291 Query 2475 CGAGCACGACAAGGCCTACGACCAGCAGCTCAAGGCCGGTGACAACCCCTACCTCAAGTA 2534 |||||||||| |||| | ||||||| |||| || ||||| || |||||||||| Sbjct 5292 AGAGCACGACATCAACTACCGCGAGCAGCTGGAGGCAGGAGACAATCCTTACCTCAAGTC 5351 Query 2535 CAACCACGCCGACGCGGAGTTCCAGCAGCGGCTTCAGGGCGACACATCGTTTGGGGGCAA 2594 |||| || | ||| || || ||| || ||| | |||||| | |||||||| || Sbjct 5352 CAACGACACTGACCGAGACTTTCAGAAGAAGCTCTCTGACGACACCTTTTTTGGGGGAAA 5411 Query 2595 CCTCGGCAGAGCAGTCTTCCAGGCCAAAAAGAGGGTTCTTGAACCTCTTGGTCTGGTTGA 2654 || | ||||||||| ||||||| ||||| | || || ||| ||||||||| || Sbjct 5412 CCAAAAAAAGGCAGTCTTCTAGGCCAAGAAGAGTCTGCTGGAGCCTTTTGGTCTGGCGGA 5471 Query 2655 GCAAGCGGG---TGAGACGGCTCCTGGAAAGAAG 2685 ||||| ||| | ||| |||||||| |||||| Sbjct 5472 GCAAGAGGGCGCTAGGACAGCTCCTGGGAAGAAG 5505 Score = 138 bits (152), Expect = 3e-29 Identities = 216/309 (70%), Gaps = 0/309 (0%) Strand=Plus/Plus Query 4058 TGCCTGGAATGGTCTGGCAAAACAGAGACATTTACTACCAGGGTCCCATTTGGGCCAAGA 4117 ||||||| ||| ||||| ||| ||||||| ||| |||||| | || ||||||||| Sbjct 6808 TGCCTGGCATGAATTGGCAGAACTGAGACATCTACCTCCAGGGCCTGATCTGGGCCAAGG 6867 Query 4118 TTCCTCATACCGATGGACACTTTCACCCCTCACCGCTGATTGGTGGGTTTGGGCTGAAAC 4177 |||| || || || ||||||||| | | || || || || || || ||||| || || Sbjct 6868 TTCCACACACTGACGGACACTTTTATCTGTCTCCTCTCATGGGGGGATTTGGTCTCAAGA 6927 Query 4178 ACCCGCCTCCTCAAATTTTTATCAAGAACACCCCGGTACCTGCGAATCCTGCAACGACCT 4237 | || |||||||| || | |||||||||||||||| |||| | ||| || | | Sbjct 6928 AGCCCCCTCCTCAGATCCTGGTCAAGAACACCCCGGTTACTGCCGACCCTCCAGTGGAAT 6987 Query 4238 TCAGCTCTACTCCGGTAAACTCCTTCATTACTCAGTACAGCACTGGCCAGGTGTCGGTGC 4297 ||| | | | ||| |||||| ||||| || |||||||| || || | ||| Sbjct 6988 TCACAAGTGACAAGCTCAACAGCTTCATCACTCAATATAGCACTGGACAAGTAACCGTGG 7047 Query 4298 AGATTGACTGGGAGATCCAGAAGGAGCGGTCCAAACGCTGGAACCCCGAGGTCCAGTTTA 4357 | ||| | |||||| | ||| |||| ||||| | |||||||| || | || | | Sbjct 7048 AAATTAAATGGGAGCTGCAGCTGGAGGACTCCAAGAGGTGGAACCCAGAAATTCAATACA 7107 Query 4358 CCTCCAACT 4366 | ||||||| Sbjct 7108 CTTCCAACT 7116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15115817990000