Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013-
09-15] 160,500 sequences; 1,926,439,238 total letters
Query= NC_001829.1
Length=4767
Score E
Sequences producing significant alignments: (Bits) Value
seq86691 398 2e-107
seq99286 217 4e-53
>seq86691
Length=5340
Score = 398 bits (440), Expect = 2e-107
Identities = 578/801 (72%), Gaps = 18/801 (2%)
Strand=Plus/Plus
Query 1040 GTACATGGAGCTGGTCGGGTGGCTGGTGGACCGCGGGATCACGTCAGAAAAGCAATGGAT 1099
|||||||||||| || ||||||||||| ||| || |||||||| | |||| ||||
Sbjct 2263 GTACATGGAGCTCGTTAACTGGCTGGTGGAGATCGGCATTACGTCAGAGA-GCAACGGAT 2321
Query 1100 CCAGGAGGACCAGGCGTCCTACATCTCCTTCAACGCCGCCTCCAACTCGCGGTCACAAAT 1159
|||||| | |||| |||| ||||| | |||||| | | | | || | ||||
Sbjct 2322 TCAGGAGAAGCAGGAATCCTGTATCTCTTACAACGCGACGGGCGATGCCCGCTTGCAAAA 2381
Query 1160 CAAGGCCGCGCTGGACAATGCCTCCAAAATCATGAGCCTGACAAAGACGGCTCCGGACTA 1219
|||| | || |||||||| ||| | ||||| || ||||||| | ||||| | |||
Sbjct 2382 CAAGTCGGCTCTGGACAACGCCGGCCAAATCGTGGGCCTGACCACCACGGCCTCAGACGG 2441
Query 1220 CCTGGTGGGC-CAGAACCCGCCGGAGGACATTTCCAGCA--ACCGCATCTACCGAATCCT 1276
|| ||| || | | ||| ||| ||| | || || | |||||||| | | ||| |
Sbjct 2442 CCGGGTCGGTTCCGCACC-GCCAGAGCA----TCGAGGACGACCGCATCCGCTGCATCTT 2496
Query 1277 CGAGATGAACGGGTACGATCCGCAGTACGCGGCCTCCGTCTTCCTGGGCTGGGCGCAAAA 1336
| | |||| | || ||| ||||| | |||||| | |||| |||| | |
Sbjct 2497 TCACCTCCACGGCTGCGGCCCGGCCTACGCCGGCTCCGTGGTGCTGGCCTGGTGCCGGAG 2556
Query 1337 GAAGTTCGGGAAGAGGAACACCATCTGGCTCTTTGGGCCGGCCACGACGGGTAAAACCAA 1396
|||| || || ||||| || ||||||||||||| || || | ||||| || ||||
Sbjct 2557 AAAGTCTGGCCAGCGGAACGCCGTCTGGCTCTTTGGACCTGCGCCCACGGGAAAGACCAG 2616
Query 1397 CATCGCGGAAGCCATCGCCCACGCCGTGCCCTTCTACGGCTGCGTGAACTGGACCAATGA 1456
| | |||| | | || || || |||||||| || || |||| |||||||||| ||
Sbjct 2617 CGTTGCGGTGTCTACTGCGCATGCTGTGCCCTTTTATGGGCGCGTCAACTGGACCAGCGA 2676
Query 1457 GAACTTTCCGTTCAACGATTGCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGCAAGAT 1516
|||||||| | || ||||| || ||||||| |||||| |||||||||||||||| |||
Sbjct 2677 GAACTTTCTCTCCAT-GATTGTGTGGACAAGACGGTGATTTGGTGGGAGGAGGGCACGAT 2735
Query 1517 GACGGCCAAGGTCGTAGAGAGCGCCAAGGCCATCCTGGGCGGAAGCAAGGTGCGCGTGGA 1576
| ||||||| ||||| ||| ||| ||||||||||||| | | | || | |||||
Sbjct 2736 GGCGGCCAAAGTCGTGGAGTCGGCCGAGGCCATCCTGGGGGCTCGGCTG-TGTGAGTGGA 2794
Query 1577 CCAAAAGTGCAAGTCATCGGCCCAGATCGACCCAACTCCCGTGATCGTCACCTCCAACAC 1636
||| || |||||| | ||| |||| || || || || || ||| |||||||||||||
Sbjct 2795 CCAGAAATGCAAGCC-TCGCAGCAGACGGAACCCACACCGGTCATCATCACCTCCAACAC 2853
Query 1637 CAACATGTGCGCGGTCATCGACGGAAACTCGACCACCTTCGAGCACCAACAACCACTCCA 1696
|||||||| || || ||| ||||||||||||| ||||| || |||||||| || | ||
Sbjct 2854 CAACATGTCCGTGGCCATTGACGGAAACTCGAAGACCTTTGAACACCAACAGCCGTTACA 2913
Query 1697 GGACCGGATGTTCAAGTTCGAGCTCACCAAGCGCCTGGAGCACGACTTTGGCAAGGTCAC 1756
|| ||| ||||||||||| || || || |||| ||| || |||||||| || || ||
Sbjct 2914 GGCCCGCATGTTCAAGTTTGAACTGACTTAGCGTTTGGTGCCAGACTTTGGGAAAGTGAC 2973
Query 1757 CAAGCAGGAAGTCAAAGACTTTTTCCGGTGGGCGTCAGATCACGTG-ACCGAGGTGACTC 1815
|||||||| ||||||||||||| | | || |||| | ||| | | || ||| |||
Sbjct 2974 TAAGCAGGAGGTCAAAGACTTTTGCTTG-GGCCGTC-GCCAACGAGCATCG-GGT--CTC 3028
Query 1816 ACGAGTTTTACGTCAGAAAGG 1836
||||||||| || || ||||
Sbjct 3029 ACGAGTTTTTTGTGAGGAAGG 3049
Score = 311 bits (344), Expect = 3e-81
Identities = 486/684 (71%), Gaps = 26/684 (4%)
Strand=Plus/Plus
Query 2890 GGTGCCGATGGAGTGGGTAATGCCTCGGGTGATTGGCATTGCGATTCCACCTGGTCTGAG 2949
|||||||||| ||||| | ||||||| |||||| ||||||||||| ||| |
Sbjct 4172 GGTGCCGATGCCGTGGGGAGCTCCTCGGGAAATTGGCGTTGCGATTCCAAATGGATGGGC 4231
Query 2950 GGCCACGTCACGACCACCAGCACCAGAACCTGGGTCTTGCCCACCTACAACAACCACCTC 3009
|||||| |||| |||| | ||||||||| |||||| ||||||| ||||||
Sbjct 4232 AACCACGTGCTCACCAAGTCCACCGGGACCTGGGTCCTGCCCAGCTACAACCACCACCAG 4291
Query 3010 TACAAGCG-----ACTCGGAGAGAGCCTGCAGTCCA--ACACCTACAACGGATTCTCCAC 3062
|||||||| |||| | ||||| ||| | | ||| | | || | | ||| ||
Sbjct 4292 TACAAGCGCATCGACTCACACGGAGCCACCAG-CAATGACAATTTCTACAGCTACTCTAC 4350
Query 3063 CCCCTGGGGATACTTTGACTTCAACCGCTTCCACTGCCACTTCTCACCACGTGACTGGCA 3122
|| ||||||||||||||||| ||||||||||| | |||||| ||||| || ||||||||
Sbjct 4351 TCCTTGGGGATACTTTGACTTTAACCGCTTCCAGTACCACTTTTCACCCCGAGACTGGCA 4410
Query 3123 GCGACTCATCAACAACAACTGGGGCATGCGACCCAA-AGCCATGCGGGTCAAAATCTTCA 3181
| | || |||||||||| ||||| || || ||||| || | | | |||| | ||||
Sbjct 4411 GGGCTTCGTCAACAACAATTGGGGTATCCGGCCCAAGAGACTTTC-CTTCAAGCTGTTCA 4469
Query 3182 ACATCCAGGTCAAGGAGGTCACGACGTCGAACGGCGAGACAACGGTGGCTAATAACCTTA 3241
|| ||||||| ||||||||||| ||| | | || | || || | | |||||||| |
Sbjct 4470 ACGTCCAGGTTAAGGAGGTCACTACGCAGGAGGGAGCCACGACCATCACCAATAACCTCA 4529
Query 3242 CCAGCACGGTTCAGATCTTTGCGGACTCGTCGTACGAACTGCCGTACGTGAT-GGATGCG 3300
||||||| | ||| ||||||||||| || | | | | ||| ||||| | || ||
Sbjct 4530 CCAGCACCATCCAGGTCTTTGCGGACGCGGACTGCCAGTTCCCGCACGTGCTAGGCAACG 4589
Query 3301 GGTCAAGAGGGCAGCCTGCCTCCTTTTCCCAACGACGTCTTTATGGTGCCCCAGTACGGC 3360
| || ||||| | |||||||| || | ||||||||| | ||||||||||||| |
Sbjct 4590 CG-CACGAGGGAACGCTGCCTCCCTTCC----CGACGTCTTCACCGTGCCCCAGTACGCC 4644
Query 3361 TACTGTGGACTGGTGACCGGCAACACTTCGCAGCAACAGACTGACAGAAATGCCTTCTAC 3420
|||| | || | ||| ||| ||| |||| | ||| | ||||| |
Sbjct 4645 GACTGCAG-CTCAACAACGGGGACA-----AAGCCACAG-CGCGCAGCA---GCTTCTGC 4694
Query 3421 TGCCTGGAGTACTTTCCTTCGCAGATGCTGCGGACTGGCAACAACTTTGAAATTACGTAC 3480
||||| | |||| | | |||||||||||||| |||||||||| | | | ||||
Sbjct 4695 TGCCTCGGGTACATGCGGAGCCAGATGCTGCGGACCGGCAACAACTACGCCTTCATGTAC 4754
Query 3481 AGTTTTGAGAAGGTGCCTTTCCACTCGATGTACGCGCACAGCCAGAGCCTGGACCGGCTG 3540
|||||| | || || | |||| ||||||| ||||| |||||||||||||| |||
Sbjct 4755 CAGTTTGAGGACGTACCCTCTCACTGGATGTACATGCACATCCAGAGCCTGGACCACCTG 4814
Query 3541 ATGAACCCTCTCATCGACCAGTAC 3564
||||| || |||| |||||||||
Sbjct 4815 ATGAAGCCGTTCATGGACCAGTAC 4838
Score = 194 bits (214), Expect = 5e-46
Identities = 313/441 (71%), Gaps = 17/441 (4%)
Strand=Plus/Plus
Query 2132 GTATCAGAAACTGTGTCCGATTCATCACATCATGGGGAGGGCGCCCGAGGTGGCC--TGC 2189
|||| | || ||||| | ||||||| || |||| |||||| |||| ||| ||
Sbjct 3417 GTATAAAAAGCTGTGCGCAGTTCATCATATTCTGGGCCCGGCGCCAGAGG--GCCAGTGT 3474
Query 2190 TCGGCCTGCGAACTGGCCAATGTGGAC----TTG---GATGACTGTGACATGGAACAATA 2242
|| ||||| | || |||||||| ||| ||| ||| |||| | | |||||||
Sbjct 3475 TCTGCCTGTAATCTCGCCAATGTTGACAATGTTGATCGATAACTGCAATAAAGAACAATG 3534
Query 2243 AATGACTCAAACCAGATATGACTGACGGTTACCTTCCAGATTGGCTAGAGGACAACCTCT 2302
| |||||||||| ||||||| |||| ||||| ||||||| ||| | ||||||| |||
Sbjct 3535 ATTGACTCAAAC-AGATATGGCTGATGGTTATTTTCCAGACTGGTTGGAGGACACTTTCT 3593
Query 2303 CTGAAGGCGTTCGAGAGTGGTGGGCGCTGCAAC-CTGGAGCCCCTAAACCCAAGGCAAAT 2361
|||| || || ||||| ||||| ||||||| || ||||| | | |
Sbjct 3594 CTGAGGGTCGGCGCCAGTGGAATAAA-TGCAAGGCTGGAGCGCCCAAACCGCGGCCTCAC 3652
Query 2362 CAACAACATCAGGACAACGCTCGGGGTCTTGTGCTTCCGGGTTACAAATACCTCGGACCC 2421
|| || || || ||| |||||| ||| || |||||||| || ||||| ||| | |||
Sbjct 3653 CAGCATCACCAAGACTCTTCTCGGGTTCTGGTCCTTCCGGGATATAAATATCTCAGTCCC 3712
Query 2422 GGCAACGGACTCGACAAGGGGGAACCCGTCAACGCAGCGGACGCGGCAGCCCTCGAGCAC 2481
|||||| || || ||||| || | ||||| || ||||| | || || |||||
Sbjct 3713 TTCAACGGTCTGGATAAGGGAGACCTGGTCAATCGGGCAGACGCCGTCGCTCTAGAGCAT 3772
Query 2482 GACAAGGCCTACGACCAGCAGCTCAAGGCCGGTGACAACCCCTACCTCAAGTACAACCAC 2541
|| |||| ||| | |||||||| |||| || ||||||||| |||||||||||||||
Sbjct 3773 GA--AGGC-TACAGCGAGCAGCTCGAGGCGGGACACAACCCCTCCCTCAAGTACAACCAT 3829
Query 2542 GCCGACGCGGAGTTCCAGCAG 2562
|||||| ||||||||| ||
Sbjct 3830 GCCGACAGAGAGTTCCAGGAG 3850
>seq99286
Length=7566
Score = 217 bits (240), Expect = 4e-53
Identities = 480/706 (68%), Gaps = 54/706 (8%)
Strand=Plus/Plus
Query 2891 GTGCCGATGGAGTGGGTAATGCCTCGGGTGATTGGCATTGCGATTCCACCTGGTCTGAGG 2950
|||||| |||||||| ||||| |||||||||||| ||||| ||| ||| | |
Sbjct 5690 GTGCCGCCGGAGTGGGCTCTGCCTGCGGTGATTGGCATGGCGATACCAGGTGGATGGGAG 5749
Query 2951 GCCACGTCACGACCACCAGCACCAGAACCTGGGTCTTGCCCACCTACAACAACCACCTCT 3010
|| | ||| || | |||| | ||| ||||| ||||||||| ||||||||| |||
Sbjct 5750 ACCTCATCATTACAAAGTCCACCTGGACCGGGGTCCTGCCCACCTT-AACAACCACGTCT 5808
Query 3011 ACAAGCG-ACTCGGAG----AGAGCCTGCAGTC----CAACACCTACAACGGATTCTCCA 3061
||| ||| || || | | | ||| |||||||||| || | | ||
Sbjct 5809 ACAGGCGGACCACCAGTTCCACCGGCATCAGCAACAACAACACCTACTTTGGTTACAGCA 5868
Query 3062 CCCCCTGGGGA----TACTTTGACTTCAACCGCTTCCACTGCCACTTCTCACCACGTGAC 3117
||| || || |||||||||||||||| |||||||| | ||| | || |||
Sbjct 5869 CCCGA-GGAGAGCTGTACTTTGACTTCAACCACTTCCACT------TTTCATCCCGAGAC 5921
Query 3118 TGGCAGCGACTCATCAACAACAACTGGGGCATGCGACCCAAAGCCATGCGG-GTCAAAAT 3176
||||||| ||| |||| ||||||||||| | || ||| ||| | ||| |||| |
Sbjct 5922 TGGCAGCATCTCGTCAATAACAACTGGGGTGTCCGGCCC-AAGTGACTCGGTTTCAAGTT 5980
Query 3177 CTTCAACATCCAGGTCAAGGAGGTCACGAC-GTCGAACGGCGAGACAACGGTGGCTAATA 3235
|||| ||| | ||||||||||||||||| |||| || || | || | || |||
Sbjct 5981 ATTCACCATATAAGTCAAGGAGGTCACGACAGTCG-ACAGCACAAAGACCATCGCCAATG 6039
Query 3236 ACCTTACCAGCACGGTTCAGATCTTTGCGGACTCGTCGTACGAACTG-------CCGTAC 3288
|||| |||||||| | ||| | |||| |||| | ||| |||| |||| |
Sbjct 6040 ACCTCACCAGCACCATCCAGGTGTTTGTGGACAC-----ACGGACTGTCGGCTCCCGTCC 6094
Query 3289 GTGA-TGG--ATGCGGGTCAAGAGGGCAGCCTGCCTCCTTTTCCCAACGACGTCTTTATG 3345
|||| ||| |||| || || || |||| || || ||||| | | |||||||||
Sbjct 6095 GTGACTGGCAATGC---CCACGAAGGGTGCCTACCCCCATTTCCGGCCTATGTCTTTATG 6151
Query 3346 GTGCCCCAGTACGGCTACTGTGGACTGGTGACCGGCAACACTTCGCAGCAACAGACTG-A 3404
|||| || ||||| ||| |||| ||||| | ||| ||| ||
Sbjct 6152 ATGCCTCAATACGGATAC---------CTGACTTTCAACAATGGGCA-CAATGCCGTGCC 6201
Query 3405 CAGAAATGCCTTCTACTGCCTGGAGTACTTTCCTTCGCAGATGCTGCGGACTGGCAACAA 3464
||| | ||| ||| || ||||||| |||||| | ||||| | || ||||||||
Sbjct 6202 CAGGAGCACCTACTATTGTCTGGAGTGCTTTCCCAGAAAAATGCTAAGAACAGGCAACAA 6261
Query 3465 CTTTGAAATTACGTACAGTTTTGAGAAGGTGCCTTTCCACTCGATGTACGCGCACAGCCA 3524
||||| ||| |||| |||||| |||| ||||| || | ||||||| ||||||||
Sbjct 6262 CTTTGCCTTTAGGTACGACTTTGAGGAGGTACCTTTTCAGTAGATGTACATACACAGCCA 6321
Query 3525 GAGCCTGGACCGGCTGATGAACCCTCTCATCGACCAGTACCTGTGG 3570
|||| ||||||||||||||||| || | ||| ||||| |||||
Sbjct 6322 GAGCACTGACCGGCTGATGAACCCGCTGTTGGACTAGTACTTGTGG 6367
Score = 197 bits (218), Expect = 4e-47
Identities = 315/454 (69%), Gaps = 20/454 (4%)
Strand=Plus/Plus
Query 2235 GAACAATAAATGACTCAAACCAGATATGACTGACGGTTACCTTCCAGATTGGCTAGAGGA 2294
|||| || | ||||||||| ||| | | |||| ||||| |||| |||| | |||||
Sbjct 5069 GAACCATGATGGACTCAAAC-AGACACGGCTGATGGTTATTTTCCGGATTAATTGGAGGA 5127
Query 2295 CAACCTCTCTGAAGGCGTTCGAGAGTGGTGGGCGCTGCAACCTGGAGCCCCTAAACCCAA 2354
| ||| ||||||||| || | || |||| ||| || ||||| |
Sbjct 5128 TACCCTTTCTGAAGGCTTTTGCGACTGGT----------------AGCACCCAAACCGAG 5171
Query 2355 GGCAAATCAACAACATCAGGACAACGCTCGGGGTCTTGTGCTTCCGGGTTACAAATACCT 2414
| | || || ||||| || ||| ||||||||||| || ||||| || | ||||| ||
Sbjct 5172 GCCTAACCAGCAACAGCAAGACTCTGCTCGGGGTCTGGTCCTTCCAGGATGTAAATATCT 5231
Query 2415 CGGACCCGGCAACGGACTCGACAAGGGGGAACCCGTCAACGCAGCGGACGCGGCAGCCCT 2474
||| ||| |||||| ||||| || || | | || ||| ||| ||| | | ||||
Sbjct 5232 CGGTCCCCTCAACGGTCTCGATAAAGGAGGCGCGGTTAACAGAGCAGACACCACTGCCCG 5291
Query 2475 CGAGCACGACAAGGCCTACGACCAGCAGCTCAAGGCCGGTGACAACCCCTACCTCAAGTA 2534
|||||||||| |||| | ||||||| |||| || ||||| || ||||||||||
Sbjct 5292 AGAGCACGACATCAACTACCGCGAGCAGCTGGAGGCAGGAGACAATCCTTACCTCAAGTC 5351
Query 2535 CAACCACGCCGACGCGGAGTTCCAGCAGCGGCTTCAGGGCGACACATCGTTTGGGGGCAA 2594
|||| || | ||| || || ||| || ||| | |||||| | |||||||| ||
Sbjct 5352 CAACGACACTGACCGAGACTTTCAGAAGAAGCTCTCTGACGACACCTTTTTTGGGGGAAA 5411
Query 2595 CCTCGGCAGAGCAGTCTTCCAGGCCAAAAAGAGGGTTCTTGAACCTCTTGGTCTGGTTGA 2654
|| | ||||||||| ||||||| ||||| | || || ||| ||||||||| ||
Sbjct 5412 CCAAAAAAAGGCAGTCTTCTAGGCCAAGAAGAGTCTGCTGGAGCCTTTTGGTCTGGCGGA 5471
Query 2655 GCAAGCGGG---TGAGACGGCTCCTGGAAAGAAG 2685
||||| ||| | ||| |||||||| ||||||
Sbjct 5472 GCAAGAGGGCGCTAGGACAGCTCCTGGGAAGAAG 5505
Score = 138 bits (152), Expect = 3e-29
Identities = 216/309 (70%), Gaps = 0/309 (0%)
Strand=Plus/Plus
Query 4058 TGCCTGGAATGGTCTGGCAAAACAGAGACATTTACTACCAGGGTCCCATTTGGGCCAAGA 4117
||||||| ||| ||||| ||| ||||||| ||| |||||| | || |||||||||
Sbjct 6808 TGCCTGGCATGAATTGGCAGAACTGAGACATCTACCTCCAGGGCCTGATCTGGGCCAAGG 6867
Query 4118 TTCCTCATACCGATGGACACTTTCACCCCTCACCGCTGATTGGTGGGTTTGGGCTGAAAC 4177
|||| || || || ||||||||| | | || || || || || || ||||| || ||
Sbjct 6868 TTCCACACACTGACGGACACTTTTATCTGTCTCCTCTCATGGGGGGATTTGGTCTCAAGA 6927
Query 4178 ACCCGCCTCCTCAAATTTTTATCAAGAACACCCCGGTACCTGCGAATCCTGCAACGACCT 4237
| || |||||||| || | |||||||||||||||| |||| | ||| || | |
Sbjct 6928 AGCCCCCTCCTCAGATCCTGGTCAAGAACACCCCGGTTACTGCCGACCCTCCAGTGGAAT 6987
Query 4238 TCAGCTCTACTCCGGTAAACTCCTTCATTACTCAGTACAGCACTGGCCAGGTGTCGGTGC 4297
||| | | | ||| |||||| ||||| || |||||||| || || | |||
Sbjct 6988 TCACAAGTGACAAGCTCAACAGCTTCATCACTCAATATAGCACTGGACAAGTAACCGTGG 7047
Query 4298 AGATTGACTGGGAGATCCAGAAGGAGCGGTCCAAACGCTGGAACCCCGAGGTCCAGTTTA 4357
| ||| | |||||| | ||| |||| ||||| | |||||||| || | || | |
Sbjct 7048 AAATTAAATGGGAGCTGCAGCTGGAGGACTCCAAGAGGTGGAACCCAGAAATTCAATACA 7107
Query 4358 CCTCCAACT 4366
| |||||||
Sbjct 7108 CTTCCAACT 7116
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 15115817990000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |