Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013- 09-15] 160,500 sequences; 1,926,439,238 total letters Query= NC_002077.1 Length=4718 Score E Sequences producing significant alignments: (Bits) Value seq86691 434 3e-118 seq99286 327 3e-86 >seq86691 Length=5340 Score = 434 bits (480), Expect = 3e-118 Identities = 542/737 (74%), Gaps = 6/737 (1%) Strand=Plus/Plus Query 1004 TACATGGAGCTGGTCGGGTGGCTGGTGGACCGGGGCATCACCTCCGAGAAGCAGTGGATC 1063 ||||||||||| || ||||||||||| ||||| || || |||| ||| |||| Sbjct 2264 TACATGGAGCTCGTTAACTGGCTGGTGGAGATCGGCATTACGTCAGAGA-GCAACGGATT 2322 Query 1064 CAGGAGGACCAGGCCTCGTACATCTCCTTCAACGCCGCTTCCAACTCGCGGTCCCAGATC 1123 |||||| | |||| || | ||||| | |||||| | | | | || | || | | Sbjct 2323 CAGGAGAAGCAGGAATCCTGTATCTCTTACAACGCGACGGGCGATGCCCGCTTGCAAAAC 2382 Query 1124 AAGGCCGCTCTGGACAATGCCGGCAAGATCATGGCGCTGACCAAATCCGCGCCCGACTAC 1183 ||| | ||||||||||| |||||| | ||| ||| ||||||| | || | ||| | Sbjct 2383 AAGTCGGCTCTGGACAACGCCGGCCAAATCGTGGGCCTGACCACCACGGCCTCAGACGGC 2442 Query 1184 CTGGTAGGCCCCGCTCCGCCCGCGGACATTAAAACCAACCGCATCTACCGCATCCTGGAG 1243 | ||| || |||| ||||| | | ||| | | |||||||| | ||||| | | Sbjct 2443 CGGGTCGGTTCCGCACCGCCAGAG--CATCGAGGACGACCGCATCCGCTGCATCTTTCAC 2500 Query 1244 CTGAACGGCTACGAACCTGCCTACGCCGGCTCCGTCTTTCTCGGCTGGGCCCAGAAAAGG 1303 || |||||| || || ||||||||||||||||| | || | |||| || || || | Sbjct 2501 CTCCACGGCTGCGGCCCGGCCTACGCCGGCTCCGTGGTGCTGGCCTGGTGCCGGAGAAAG 2560 Query 1304 TTCGGGAAGCGCAACACCATCTGGCTGTTTGGGCCGGCCACCACGGGCAAGACCAACATC 1363 | || |||| ||| || ||||||| ||||| || || ||||||| ||||||| | | Sbjct 2561 TCTGGCCAGCGGAACGCCGTCTGGCTCTTTGGACCTGCGCCCACGGGAAAGACCAGCGTT 2620 Query 1364 GCGGAAGCCATCGCCCACGCCGTGCCCTTCTACGGCTGCGTCAACTGGACCAATGAGAAC 1423 |||| | | || || || |||||||| || || ||||||||||||||| |||||| Sbjct 2621 GCGGTGTCTACTGCGCATGCTGTGCCCTTTTATGGGCGCGTCAACTGGACCAGCGAGAAC 2680 Query 1424 TTTCCCTTCAATGATTGCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGCAAGATGACG 1483 |||| || || |||||| || ||||||| |||||| |||||||||||||||| |||| || Sbjct 2681 TTTCTCTCCA-TGATTGTGTGGACAAGACGGTGATTTGGTGGGAGGAGGGCACGATGGCG 2739 Query 1484 GCCAAGGTCGTGGAGTCCGCCAAGGCCATTCTCGGCGGCAGCAAGGTGCGCGTGGACCAA 1543 ||||| ||||||||||| ||| ||||||| || || ||| ||| | |||||||| Sbjct 2740 GCCAAAGTCGTGGAGTCGGCCGAGGCCATCCTGGG-GGCTCGGCTGTGTGAGTGGACCAG 2798 Query 1544 AAGTGCAAGTCGTCCGCCCAGATCGACCCCACCCCCGTGATCGTCACCTCCAACACCAAC 1603 || |||||| | || |||| || ||||| || || ||| ||||||||||||||||| Sbjct 2799 AAATGCAAGCC-TCGCAGCAGACGGAACCCACACCGGTCATCATCACCTCCAACACCAAC 2857 Query 1604 ATGTGCGCCGTGATTGACGGGAACAGCACCACCTTCGAGCACCAGCAGCCGTTGCAGGAC 1663 |||| || | |||||||| ||| | ||||| || ||||| |||||||| |||| | Sbjct 2858 ATGTCCGTGGCCATTGACGGAAACTCGAAGACCTTTGAACACCAACAGCCGTTACAGGCC 2917 Query 1664 CGGATGTTCAAATTTGAACTCACCCGCCGTCTGGAGCATGACTTTGGCAAGGTGACAAAG 1723 || |||||||| |||||||| || ||| ||| || |||||||| || ||||| ||| Sbjct 2918 CGCATGTTCAAGTTTGAACTGACTTAGCGTTTGGTGCCAGACTTTGGGAAAGTGACTAAG 2977 Query 1724 CAGGAAGTCAAAGAGTT 1740 ||||| |||||||| || Sbjct 2978 CAGGAGGTCAAAGACTT 2994 Score = 315 bits (348), Expect = 2e-82 Identities = 508/728 (70%), Gaps = 27/728 (4%) Strand=Plus/Plus Query 2829 ATGGCTTCAGGCGGTGGCGC---ACCAATGGCAGACAATAACGAAGGCGCCGACGGAGTG 2885 |||||| |||| || |||| ||||| || ||||| | || ||||| | ||| Sbjct 4130 ATGGCTACAGGAGGCAGCGCTCCACCAA--GC-GACAACATGCCGGGTGCCGATGCCGTG 4186 Query 2886 GGTAATGCCTCAGGAAATTGGCATTGCGATTCCACATGGCTGGGCGACAGAGTCATCACC 2945 || | |||| |||||||||| ||||||||||| |||| ||||| || || ||||| Sbjct 4187 GGGAGCTCCTCGGGAAATTGGCGTTGCGATTCCAAATGGATGGGCAACCACGTGCTCACC 4246 Query 2946 ANNNNNNNNNNNNNNNNNNNNNTGCCCACCTACAATAACCACCTCTACAAGCAAATCTCC 3005 | |||||| |||||| |||||| ||||||| ||| | Sbjct 4247 AAGTCCACCGGGACCTGGGTCCTGCCCAGCTACAACCACCACCAGTACAAGCGCATCGAC 4306 Query 3006 AGTGCTTCA-ACGGGGGC--CAGCAACGACAACCACTACTTCGGCTACAGCACCCCCTGG 3062 ||| |||| | | |||||| ||||| |||| ||||| || || ||| Sbjct 4307 ------TCACACGGAGCCACCAGCAATGACAATTTCTACA---GCTACTCTACTCCTTGG 4357 Query 3063 GGGTATTTTGATTTCAACAGATTCCACTGCCACTTTTCACCACGTGACTGGCAGCGACTC 3122 || || ||||| || ||| | ||||| | |||||||||||| || ||||||||| | || Sbjct 4358 GGATACTTTGACTTTAACCGCTTCCAGTACCACTTTTCACCCCGAGACTGGCAGGGCTTC 4417 Query 3123 ATCAACAACAATTGGGGATTCCGGCCCAAGAGACTCAACTTCAAACTCTTCAACATCCAA 3182 |||||||||||||||| |||||||||||||||| |||||| || |||||| |||| Sbjct 4418 GTCAACAACAATTGGGGTATCCGGCCCAAGAGACTTTCCTTCAAGCTGTTCAACGTCCAG 4477 Query 3183 GTCAAGGAGGTCACGACGAATGATGGCGTCACAACCATCGCTAATAACCTTACCAGCACG 3242 || ||||||||||| ||| | || || | ||| |||||| | |||||||| |||||||| Sbjct 4478 GTTAAGGAGGTCACTACGCAGGAGGGAGCCACGACCATCACCAATAACCTCACCAGCACC 4537 Query 3243 GTTCAAGTCTTCTCGGACTCGGAGTACCAGCTTCCGTACGTCCTCGGCTCTGCGCACCAG 3302 | || ||||| ||||| |||| | |||| | ||| |||| || ||| |||||| || Sbjct 4538 ATCCAGGTCTTTGCGGACGCGGACTGCCAGTTCCCGCACGTGCTAGGCAACGCGCACGAG 4597 Query 3303 GGCTGCCTCCCTCCGTTCCCGGCGGACGTGTTCATGATTCCGCAATACGGCTACCTGACG 3362 || || ||||| ||||| ||||| |||| | || || |||| | | ||| | Sbjct 4598 GGAACGCTGCCTCCCTTCCC----GACGTCTTCACCGTGCCCCAGTACGCCGA-CTGCAG 4652 Query 3363 CTCAACAATGGCAGCCAAGCCGTGGGACGTTCATC--CTTTTACTGCCTGGAATATTTCC 3420 |||||||| || | ||||| | || || | ||| | |||||| | || | | Sbjct 4653 CTCAACAACGGGGACAAAGCCACAG--CGCGCAGCAGCTTCTGCTGCCTCGGGTACATGC 4710 Query 3421 CTTCTCAGATGCTGAGAACGGGCAACAACTTTACCTTCAGCTACACCTTTGAGGAAGTGC 3480 ||||||||| | || |||||||||| |||||| ||| |||||||| || | Sbjct 4711 GGAGCCAGATGCTGCGGACCGGCAACAACTACGCCTTCATGTACCAGTTTGAGGACGTAC 4770 Query 3481 CTTTCCACAGCAGCTACGCGCACAGCCAGAGCCTGGACCGGCTGATGAATCCTCTCATCG 3540 | | ||| | | ||| ||||| |||||||||||||| |||||||| || |||| | Sbjct 4771 CCTCTCACTGGATGTACATGCACATCCAGAGCCTGGACCACCTGATGAAGCCGTTCATGG 4830 Query 3541 ACCAATAC 3548 |||| ||| Sbjct 4831 ACCAGTAC 4838 Score = 147 bits (162), Expect = 7e-32 Identities = 295/431 (68%), Gaps = 16/431 (4%) Strand=Plus/Plus Query 2107 CTGTGC-CA-TTCATCATCTGCTGGGGCGGGCTCCCGAGATTGCTTGCTCGGCCTGCGAT 2164 |||||| || |||||||| | ||||| | ||| || ||| || || ||||| || Sbjct 3427 CTGTGCGCAGTTCATCATATTCTGGGCCCGGCGCCAGAGGGCCAGTGTTCTGCCTGTAAT 3486 Query 2165 CTGGTCAACGTGGACC-------TGGATGACTGTGTTTCTGAGCAATAAATGACTTAAAC 2217 || | ||| || ||| | ||| |||| | || |||| | ||||| |||| Sbjct 3487 CTCGCCAATGTTGACAATGTTGATCGATAACTGCAATAAAGAACAATGATTGACTCAAAC 3546 Query 2218 CAGGTATGGCTGCCGATGGTTATCTTCCAGATTGGCTCGAGGACAACCTCTCTGAGGGCA 2277 || |||||||| |||||||| ||||||| ||| | ||||||| |||||||||| Sbjct 3547 -AGATATGGCTG---ATGGTTATTTTCCAGACTGGTTGGAGGACACTTTCTCTGAGGGTC 3602 Query 2278 TTCGCGAGTGGTGGGACTTGAAACCTGGAGCCCCGAAGCCCAAAGCCAACCAGCAAAAGC 2337 ||| ||||| | | || ||||||| || || || | ||||||| | | Sbjct 3603 GGCGCCAGTGGAATAAATGCAAGGCTGGAGCGCCCAAACCGCGGCCTCACCAGCATCACC 3662 Query 2338 AGGACGACGGCCGGGGTCTGGTGCTTCCTGGCTACAAGTACCTCGGACCCTTCAACGGAC 2397 | ||| |||| |||||| ||||| || || || || ||| | ||||||||||| | Sbjct 3663 AAGACTCTTCTCGGGTTCTGGTCCTTCCGGGATATAAATATCTCAGTCCCTTCAACGGTC 3722 Query 2398 TCGACAAGGGGGAGCCCGTCAACGCGGCGGACGCAGCGGCCCTCGAGCACGACAAGGCCT 2457 | || ||||| || | ||||| ||| ||||| | || || ||||| | |||| || Sbjct 3723 TGGATAAGGGAGACCTGGTCAATCGGGCAGACGCCGTCGCTCTAGAGCATG--AAGG-CT 3779 Query 2458 ACGACCAGCAGCTCAAAGCGGGTGACAATCCGTACCTGCGGTATAACCACGCCGACGCCG 2517 || | |||||||| | ||||| |||| || | ||| ||| ||||| |||||| | Sbjct 3780 ACAGCGAGCAGCTCGAGGCGGGACACAACCCCTCCCTCAAGTACAACCATGCCGACAGAG 3839 Query 2518 AGTTTCAGGAG 2528 |||| |||||| Sbjct 3840 AGTTCCAGGAG 3850 >seq99286 Length=7566 Score = 327 bits (362), Expect = 3e-86 Identities = 529/762 (69%), Gaps = 17/762 (2%) Strand=Plus/Plus Query 2797 CAGCAACCCCCGCTGCTGTGGGACCTACTACAATGGCTTCAGGCGGTGGCGCACCAATGG 2856 ||||| |||||| | ||| ||||| |||||||||| |||| ||||| ||||| ||| Sbjct 5615 CAGCAGCCCCCGTCAATTTGGAACCTAATACAATGGCTGCAGGATGTGGCTCACCAGTGG 5674 Query 2857 CAGACAATAACGAAGGCGCCGACGGAGTGGGTAATGCCTCAGGAAATTGGCATTGCGATT 2916 ||||| | | | |||| ||||||||| ||||| || |||||||| ||||| Sbjct 5675 ACGACAACATGCAGTGTGCCGCCGGAGTGGGCTCTGCCTGCGGTGATTGGCATGGCGATA 5734 Query 2917 CCACATGGCTGGGCGACAGAGTCATCACCANNNNNNNNNNNNNNNNNNNNNTGCCCACCT 2976 ||| ||| |||| ||| |||| || | ||||||||| Sbjct 5735 CCAGGTGGATGGGAGACCTCATCATTACAAAGTCCACCTGGACCGGGGTCCTGCCCACCT 5794 Query 2977 ACAATAACCACCTCTACAAGCAAATCTCCAGTGCTTCAACGGGGGCCAGCAACGACAACC 3036 || |||||| |||||| || | | ||||| || || || ||||||| ||||| Sbjct 5795 T-AACAACCACGTCTACAGGCGGACCACCAGT---TCCACCGGCATCAGCAACAACAACA 5850 Query 3037 ACTACTTCGGCTACAGCACCCCCTGGGGG---TATTTTGATTTCAACAGATTCCACTGCC 3093 |||||| || |||||||||| | | | || ||||| |||||| |||| || Sbjct 5851 CCTACTTTGGTTACAGCACCCGAGGAGAGCTGTACTTTGACTTCAAC------CACTTCC 5904 Query 3094 ACTTTTCACCACGTGACTGGCAGCGACTCATCAACAACAATTGGGGATTCCGGCCCAAGA 3153 |||||||| | || |||||||||| ||| |||| ||||| ||||| ||||||||||| Sbjct 5905 ACTTTTCATCCCGAGACTGGCAGCATCTCGTCAATAACAACTGGGGTGTCCGGCCCAAGT 5964 Query 3154 GACTCAACTTCAAACTCTTCAACATCCAAGTCAAGGAGGTCACGACGAATGATGGCGTCA 3213 ||||| ||||| | |||| ||| ||||||||||||||||||| || || | Sbjct 5965 GACTCGGTTTCAAGTTATTCACCATATAAGTCAAGGAGGTCACGACAGTCGACAGCACAA 6024 Query 3214 CAACCATCGCTAATAACCTTACCAGCACGGTTCAAGTCTTCTCGG--ACTCGGAGTACCA 3271 |||||||| ||| |||| |||||||| | || || || || || |||| | | Sbjct 6025 AGACCATCGCCAATGACCTCACCAGCACCATCCAGGTGTTTGTGGACACACGGACTGTCG 6084 Query 3272 GCTTCCGTACGTCCTCGGCTCTGCGCACCAGGGCTGCCTCCCTCCGTTCCCGGCGGACGT 3331 ||| |||| ||| ||| ||| ||| | || ||||| || || || ||||| | || Sbjct 6085 GCTCCCGTCCGTGACTGGCAATGCCCACGAAGGGTGCCTACCCCCATTTCCGGCCTATGT 6144 Query 3332 GTTCATGATTCCGCAATACGGCTACCTGACGCTCAACAATGGCAGCCAAGCCGTG-GGAC 3390 || ||||| || |||||||| |||||||| |||||||||| | | |||||| | Sbjct 6145 CTTTATGATGCCTCAATACGGATACCTGACTTTCAACAATGGGCACAATGCCGTGCCCAG 6204 Query 3391 GTTCATCCTTTTACTGCCTGGAATATTTCCCTTCTCAGATGCTGAGAACGGGCAACAACT 3450 | || ||| || || ||||| | || || | ||||| ||||| |||||||||| Sbjct 6205 GAGCA-CCTACTATTGTCTGGAGTGCTTTCCCAGAAAAATGCTAAGAACAGGCAACAACT 6263 Query 3451 TTACCTTCAGCTACACCTTTGAGGAAGTGCCTTTCCACAGCAGCTACGCGCACAGCCAGA 3510 || |||| || ||| ||||||||| || ||||| || | ||| |||||||||| Sbjct 6264 TTGCCTTTAGGTACGACTTTGAGGAGGTACCTTTTCAGTAGATGTACATACACAGCCAGA 6323 Query 3511 GCCTGGACCGGCTGATGAATCCTCTCATCGACCAATACCTGT 3552 || |||||||||||||| || || | ||| | ||| ||| Sbjct 6324 GCACTGACCGGCTGATGAACCCGCTGTTGGACTAGTACTTGT 6365 Score = 197 bits (218), Expect = 4e-47 Identities = 229/306 (75%), Gaps = 2/306 (1%) Strand=Plus/Plus Query 4029 CCTGGCATGGTGTGGCAAGATAGAGACGTGTACCTGCAGGGTCCCATTTGGGCCAAAATT 4088 ||||||||| ||||| | ||||| | ||||| ||||| | || |||||||| || Sbjct 6810 CCTGGCATGAATTGGCAGAACTGAGACATCTACCTCCAGGGCCTGATCTGGGCCAAGGTT 6869 Query 4089 CCTCACACAGATGGACACTTTCACCCGTCTCCTCTTATGGGCGGCTTTGGACTCAAGAAC 4148 || ||||| || ||||||||| | | ||||||||| ||||| || ||||| |||||||| Sbjct 6870 CCACACACTGACGGACACTTTTATCTGTCTCCTCTCATGGGGGGATTTGGTCTCAAGAAG 6929 Query 4149 CCGCCTCCTCAGATCCTCATCAAAAACACGCCTGTTCCTGCGAATCCTCCGGCGGAGTTT 4208 || |||||||||||||| |||| ||||| || ||| |||| | ||||| | ||| || Sbjct 6930 CCCCCTCCTCAGATCCTGGTCAAGAACACCCCGGTTACTGCCGACCCTCCAGTGGAATTC 6989 Query 4209 TC-AGCTACAAAGTTTGCTTCATTCATCACCCAATACTCCACAGGACAAGTGAGTGTGGA 4267 | || |||| | | | |||||||| ||||| ||| |||||||| | ||||| Sbjct 6990 ACAAGTGACAAGCTCAACAGC-TTCATCACTCAATATAGCACTGGACAAGTAACCGTGGA 7048 Query 4268 AATTGAATGGGAGCTGCAGAAAGAAAACAGCAAGCGCTGGAATCCCGAAGTGCAGTACAC 4327 |||| |||||||||||||| || || |||| | ||||| || ||| | || ||||| Sbjct 7049 AATTAAATGGGAGCTGCAGCTGGAGGACTCCAAGAGGTGGAACCCAGAAATTCAATACAC 7108 Query 4328 ATCCAA 4333 ||||| Sbjct 7109 TTCCAA 7114 Score = 158 bits (174), Expect = 4e-35 Identities = 291/428 (68%), Gaps = 19/428 (4%) Strand=Plus/Plus Query 2229 GCCGATGGTTATCTTCCAGATTGGCTCGAGGACAACCTCTCTGAGGGCATTCGCGAGTGG 2288 || ||||||||| |||| |||| | ||||| | ||| ||||| ||| || |||| ||| Sbjct 5096 GCTGATGGTTATTTTCCGGATTAATTGGAGGATACCCTTTCTGAAGGCTTTTGCGACTGG 5155 Query 2289 TGGGACTTGAAACCTGGAGCCCCGAAGCCCAAAGCCAACCAGCAAAAGCAGGACGACGGC 2348 | | || || |||| ||| || ||||||| |||| ||| | Sbjct 5156 TAGCACCCAAA----------CCGAGGCCTAA------CCAGCAACAGCAAGACTCTGCT 5199 Query 2349 CGGGGTCTGGTGCTTCCTGGCTACAAGTACCTCGGACCCTTCAACGGACTCGACAAGGGG 2408 ||||||||||| ||||| || | || || ||||| ||| ||||||| ||||| || || Sbjct 5200 CGGGGTCTGGTCCTTCCAGGATGTAAATATCTCGGTCCCCTCAACGGTCTCGATAAAGGA 5259 Query 2409 GAGCCCGTCAACGCGGCGGACGCAGCGGCCCTCGAGCACGACAAGGCCTACGACCAGCAG 2468 | | || ||| || ||| | | |||| |||||||||| |||| | ||||| Sbjct 5260 GGCGCGGTTAACAGAGCAGACACCACTGCCCGAGAGCACGACATCAACTACCGCGAGCAG 5319 Query 2469 CTCAAAGCGGGTGACAATCCGTACCTGCGGTATAACCACGCCGACGCCGAGTTTCAGGAG 2528 || | || || |||||||| ||||| || ||| || | ||| || |||||| || Sbjct 5320 CTGGAGGCAGGAGACAATCCTTACCTCAAGTCCAACGACACTGACCGAGACTTTCAGAAG 5379 Query 2529 CGTCTGCAAGAAGATACGTCTTTTGGGGGCAACCTCGGGCGAGCAGTCTTCCAGGCCAAG 2588 || || || || | ||||||||| |||| ||||||||| |||||||| Sbjct 5380 AAGCTCTCTGACGACACCTTTTTTGGGGGAAACCAAAAAAAGGCAGTCTTCTAGGCCAAG 5439 Query 2589 AAGCGGGTTCTCGAACCTCTCGGTCTGGTTGAG---GAAGGCGCTAAGACGGCTCCTGGA 2645 ||| | | || || ||| | ||||||| ||| || ||||||| ||| |||||||| Sbjct 5440 AAGAGTCTGCTGGAGCCTTTTGGTCTGGCGGAGCAAGAGGGCGCTAGGACAGCTCCTGGG 5499 Query 2646 AAGAAACG 2653 ||||| || Sbjct 5500 AAGAAGCG 5507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14959293247500