Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013- 09-15] 160,500 sequences; 1,926,439,238 total letters Query= NC_004828.1 Length=4694 Score E Sequences producing significant alignments: (Bits) Value seq86691 250 7e-63 seq99286 185 3e-43 >seq86691 Length=5340 Score = 250 bits (276), Expect = 7e-63 Identities = 495/727 (68%), Gaps = 18/727 (2%) Strand=Plus/Plus Query 2869 CTATCATGGCTGAAGGAGGTGGCGGCCCAGTGGGCGATG-CAGGCCAGGGTGCCGATGGA 2927 || |||||||| |||||| ||| ||| |||| || ||| ||||||||||| Sbjct 4125 CTGTCATGGCTACAGGAGGCAGCGCTCCACCAAGCGACAACATGCC-GGGTGCCGATGCC 4183 Query 2928 GTGGGCAATTCCTCCGGAAATTGGCATTGCGATTCCCAATGGCTGGAAAACGGAGTCGTC 2987 ||||| | ||||| |||||||||| |||||||||| ||||| ||| ||| || || Sbjct 4184 GTGGGGAGCTCCTCGGGAAATTGGCGTTGCGATTCCAAATGGATGGGCAACCACGTGCTC 4243 Query 2988 ACTCGAACCACCCGAACCTGGGTCTTGCCCAGCTACAACAACCACCTGTACAAACGAATC 3047 || ||||| | ||||||||| |||||||||||||| |||||| |||||| || ||| Sbjct 4244 ACCAAGTCCACCGGGACCTGGGTCCTGCCCAGCTACAACCACCACCAGTACAAGCGCATC 4303 Query 3048 CAAGGACCCAG-CGGAGGCNNNNNNNNNNNNNNATTCTTTGGATTCAGCACCCCCTGGGG 3106 ||| || ||||| | |||| | | | || || ||||| Sbjct 4304 ----GACTCACACGGAGCCACCAGCAATGACAATTTCTACAGCTACTCTACTCCTTGGGG 4359 Query 3107 ATACTTTGACTACAATCGATTCCACTGCCACTTTTCCCCGCGAGACTGGCAACGACTCAT 3166 ||||||||||| || || ||||| | ||||||||| || ||||||||||| | || | Sbjct 4360 ATACTTTGACTTTAACCGCTTCCAGTACCACTTTTCACCCCGAGACTGGCAGGGCTTCGT 4419 Query 3167 CAACAACAACTGGGGCATCCGTCCCAAAGCGA-TGCGCTTTAGACTCTTTAACATCCAGG 3225 ||||||||| ||||| ||||| ||| ||| || | ||| | || || ||| |||||| Sbjct 4420 CAACAACAATTGGGGTATCCGGCCC-AAGAGACTTTCCTTCAAGCTGTTCAACGTCCAGG 4478 Query 3226 TTAAAGAGGTCACGGTCCAAGACTTCAACACCACCATCGGCAACAACCTCACCAGTACGG 3285 |||| |||||||| || || ||| |||||| ||| ||||||||||| || Sbjct 4479 TTAAGGAGGTCACTACGCAGGAGGGAGCCACGACCATCACCAATAACCTCACCAGCACCA 4538 Query 3286 TCCAGGTCTTTGCGGACAAGGACTACCAACTGCCGTACGTCCTCGGATCGGCTACCGAAG 3345 ||||||||||||||||| ||||| ||| | ||| |||| || || || ||| | Sbjct 4539 TCCAGGTCTTTGCGGACGCGGACTGCCAGTTCCCGCACGTGCTAGGCAACGCGCACGAGG 4598 Query 3346 GCACCTTCCCGCCGTTCCCAGCGGATATCTACACGATCCCGCAGTACGGGTACTGCACGC 3405 | || | || || ||||| || ||| ||| | || ||||||| |||||| || Sbjct 4599 GAACGCTGCCTCCCTTCCC----GACGTCTTCACCGTGCCCCAGTACGCCGACTGCA-GC 4653 Query 3406 TAAACTACAACAACGAGGCGGTGGATCGTTCGGC--CTTCTACTGTCTGGACTACTTTCC 3463 | ||| || || | || | || | || ||||| ||| || | ||| | | Sbjct 4654 TCAACAACGGGGACAAAGC--CACAGCGCGCAGCAGCTTCTGCTGCCTCGGGTACATGCG 4711 Query 3464 CTCAGACATGCTGCGGACAGGAAATAACTTTGAGTTTACTTACACCTTCGAGGACGTTCC 3523 | ||||||||||| || || |||| | || | ||| || |||||||| || Sbjct 4712 GAGCCAGATGCTGCGGACCGGCAACAACTACGCCTTCATGTACCAGTTTGAGGACGTACC 4771 Query 3524 TTTCCATAGCATGTTTGCCCACAACCAGACGCTAGACCGGCTGATGAATCCCCTCGTGGA 3583 | || | |||| |||| ||||| || |||| |||||||| || || |||| Sbjct 4772 CTCTCACTGGATGTACATGCACATCCAGAGCCTGGACCACCTGATGAAGCCGTTCATGGA 4831 Query 3584 TCAGTAC 3590 |||||| Sbjct 4832 CCAGTAC 4838 Score = 248 bits (274), Expect = 3e-62 Identities = 327/448 (73%), Gaps = 13/448 (3%) Strand=Plus/Plus Query 1198 TGGTGCCAGAAGAAATGGGGCAAGCGAAACACGCTGTGGCTGTTCGGACATGCGACCACC 1257 ||||||| || || | ||| |||| ||| | | ||||| || |||| |||| |||| Sbjct 2546 TGGTGCCGGAGAAAGTCTGGCCAGCGGAACGCCGTCTGGCTCTTTGGACCTGCGCCCACG 2605 Query 1258 GGCAAGACCAACATCGCGGAGGCTATTGCCCATGCTGTGCCGTTCTATGGATGCGTTAAC 1317 || ||||||| | | |||| | ||| ||| ||||||||||| || ||||| |||| ||| Sbjct 2606 GGAAAGACCAGCGTTGCGGTGTCTACTGCGCATGCTGTGCCCTTTTATGGGCGCGTCAAC 2665 Query 1318 TGGACCAACGAGAACTTTCCGTTCAACGACTGCGTCGAAAAAATGATTATCTGGTGGGAG 1377 ||||||| |||||||||| | || | || || || || || | | | || ||||||||| Sbjct 2666 TGGACCAGCGAGAACTTT-CTCTCCATGATTGTGTGGACAAGACGGTGATTTGGTGGGAG 2724 Query 1378 GAGGGCAAAATGACCGCCAAAGTGGTGGAAACAGCCAAGGCGATTCTGGGAGGATCTCGG 1437 ||||||| ||| | |||||||| ||||| | ||| |||| || ||||| | ||||| Sbjct 2725 GAGGGCACGATGGCGGCCAAAGTCGTGGAGTCGGCCGAGGCCATCCTGGGGG---CTCGG 2781 Query 1438 --GTGAGAGTGGACCAAAAATGCAAAGCTTCGGTTCCGATCGAACCGACGCCGGTCATTA 1495 ||| |||||||||| |||||| |||| ||| | || ||||| || |||||||| | Sbjct 2782 CTGTGTGAGTGGACCAGAAATGC-AAGCCTCGCAGCAGACGGAACCCACACCGGTCATCA 2840 Query 1496 TTACCAGTAACACCAACATGTGTTATGTCATCGACGGGAACACGACCACGTTCGAGCATA 1555 | ||| ||||||||||||| | ||| ||||| ||| ||| || || || || Sbjct 2841 TCACCTCCAACACCAACATGTCCGTGGCCATTGACGGAAACTCGAAGACCTTTGAACACC 2900 Query 1556 AGCAGCCGTTGGAGGACAGGATGTTTAAGCTCGAATTGCTGACT---CGGTTGCCTGATG 1612 | |||||||| ||| | | ||||| ||| | ||| |||||| || ||| | Sbjct 2901 AACAGCCGTTACAGGCCCGCATGTTCAAGTTTGAA---CTGACTTAGCGTTTGGTGCCAG 2957 Query 1613 ACTTTGGTAAGGTGACCAAACAGGAGGT 1640 ||||||| || ||||| || |||||||| Sbjct 2958 ACTTTGGGAAAGTGACTAAGCAGGAGGT 2985 Score = 78.8 bits (86), Expect = 3e-11 Identities = 117/164 (71%), Gaps = 3/164 (2%) Strand=Plus/Plus Query 2418 CCAGGCTACAATTATCTAGGCCCTTTCAACGGTCTAGATAAAGGAGAACCCGTCAACGAG 2477 || || || || ||||| | || ||||||||||| ||||| ||||| | ||||| | Sbjct 3689 CCGGGATATAAATATCTCAGTCCCTTCAACGGTCTGGATAAGGGAGACCTGGTCAATCGG 3748 Query 2478 GCAGACGCTGCCGCCTTAGAACACGACAAGGCTTACGACCTCGAAATCAAGGACGGGCAC 2537 |||||||| | ||| |||| || | ||||| ||| | | || ||| || ||| Sbjct 3749 GCAGACGCCGTCGCTCTAGAGCATG--AAGGC-TACAGCGAGCAGCTCGAGGCGGGACAC 3805 Query 2538 AACCCGTACTTTGAGTACAACGAGGCCGACAGACGTTTCCAGGA 2581 ||||| | | | |||||||| | ||||||||| |||||||| Sbjct 3806 AACCCCTCCCTCAAGTACAACCATGCCGACAGAGAGTTCCAGGA 3849 >seq99286 Length=7566 Score = 185 bits (204), Expect = 3e-43 Identities = 522/786 (66%), Gaps = 39/786 (5%) Strand=Plus/Plus Query 2837 AGCAGCAGCACCCGCCTCTAGTGTGGGATCATCTATCATGGCTGAAGGAGGTGGCGGCCC 2896 ||||||||| |||| | | | ||| | | || ||||||| |||| ||||| || Sbjct 5613 AGCAGCAGCCCCCGTC---AATTTGGAACCTAATACAATGGCTGCAGGATGTGGCTCACC 5669 Query 2897 AGTGGGCGATG-CAGGCCAGGGTGCCGATGGAGTGGGCAATTCCTCCGGAAATTGGCATT 2955 ||||| ||| || || || |||||| ||||||||| | ||| ||| |||||||| Sbjct 5670 AGTGGACGACAACATGC-AGTGTGCCGCCGGAGTGGGCTCTGCCTGCGGTGATTGGCATG 5728 Query 2956 GCGATTCCCAATGGCTGGAAAACGGAGTCGTCACTCGAA---CCACCCGAACCTGGGTCT 3012 ||||| || ||| ||| | || || ||| | || ||||| | ||| ||||| Sbjct 5729 GCGATACCAGGTGGATGGGAGACC---TCATCATTACAAAGTCCACCTGGACCGGGGTCC 5785 Query 3013 TGCCCAGCTACAACAACCACCTGTACAAACGAATCCAAGGACCCAGCGGAGGCNNNNNNN 3072 |||||| || ||||||||| | |||| || | | | ||| ||| | Sbjct 5786 TGCCCACCTT-AACAACCACGTCTACAGGCGGACCACCAGTTCCACCGGCATCAGCAACA 5844 Query 3073 NNNNNNNATTCTTTGGATTCAGCACCCCCTGGGGA----TACTTTGACTACAATCGATTC 3128 | |||||| | |||||||| || || |||||||||| ||| | Sbjct 5845 ACAACACCTACTTTGGTTACAGCACCCGA-GGAGAGCTGTACTTTGACTTCAA------C 5897 Query 3129 CACTGCCACTTTTCCCCGCGAGACTGGCAACGACTCATCAACAACAACTGGGGCATCCGT 3188 |||| ||||||||| | ||||||||||| | ||| |||| ||||||||||| |||| Sbjct 5898 CACTTCCACTTTTCATCCCGAGACTGGCAGCATCTCGTCAATAACAACTGGGGTGTCCGG 5957 Query 3189 CCCAAAGCGATGCGCTTT-AGACTCTTTAACATCCAGGTTAAAGAGGTCACG---GTCCA 3244 ||| ||| || || ||| | | || | ||| | || || ||||||||| ||| Sbjct 5958 CCC-AAGTGACTCGGTTTCAAGTTATTCACCATATAAGTCAAGGAGGTCACGACAGTC-- 6014 Query 3245 AGACTTCAACACCACCATCGGCAACAACCTCACCAGTACGGTCCAGGTCTTTGCGG--AC 3302 ||| || | ||||||| ||| |||||||||| || ||||||| |||| || || Sbjct 6015 -GACAGCACAAAGACCATCGCCAATGACCTCACCAGCACCATCCAGGTGTTTGTGGACAC 6073 Query 3303 AAGGACTACCAACTGCCGTACGT-CCTCGGATCGGCTACCGAAGGCACCTTCCCGCCGTT 3361 | ||||| | || |||| ||| || | | | | | |||||| | | || || || Sbjct 6074 ACGGACTGTCGGCTCCCGTCCGTGACTGGCAATGCCCA-CGAAGGGTGCCTACCCCCATT 6132 Query 3362 CCCAGCGGATATCTACACGATCCCGCAGTACGGGTACTGCACGCTAAACTACAACAACGA 3421 || || || ||| | ||| || || ||||| ||| || | ||| | || | Sbjct 6133 TCCGGCCTATGTCTTTATGATGCCTCAATACGGATACCTGACTTTCAACAATGGGCACAA 6192 Query 3422 GGCGGTGGATCGTTCGGCCTTCTACTGTCTGGACTACTTTCCCTCAGACATGCTGCGGAC 3481 || ||| | ||| ||| |||||||| | ||||||| | | ||||| | || Sbjct 6193 TGCCGTGCCCAGGAGCACCTACTATTGTCTGGAGTGCTTTCCCAGAAAAATGCTAAGAAC 6252 Query 3482 AGGAAATAACTTTGAGTTTACTTACACCTTCGAGGACGTTCCTTTCCA-TAGCATGTTTG 3540 ||| || ||||||| |||| ||| ||| ||||| || ||||| || ||| |||| Sbjct 6253 AGGCAACAACTTTGCCTTTAGGTACGACTTTGAGGAGGTACCTTTTCAGTAG-ATGTACA 6311 Query 3541 CCCACAACCAGA-CGCTAGACCGGCTGATGAATCCCCTCGTGGATCAGTACCTCTGGGCT 3599 |||| ||||| | || |||||||||||||| || || |||| ||||| | ||| | Sbjct 6312 TACACAGCCAGAGCACT-GACCGGCTGATGAACCCGCTGTTGGACTAGTACTTGTGGACG 6370 Query 3600 TTCAGC 3605 ||||| Sbjct 6371 CTCAGC 6376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14882628067500