Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013-
09-15] 160,500 sequences; 1,926,439,238 total letters
Query= NC_004828.1
Length=4694
Score E
Sequences producing significant alignments: (Bits) Value
seq86691 250 7e-63
seq99286 185 3e-43
>seq86691
Length=5340
Score = 250 bits (276), Expect = 7e-63
Identities = 495/727 (68%), Gaps = 18/727 (2%)
Strand=Plus/Plus
Query 2869 CTATCATGGCTGAAGGAGGTGGCGGCCCAGTGGGCGATG-CAGGCCAGGGTGCCGATGGA 2927
|| |||||||| |||||| ||| ||| |||| || ||| |||||||||||
Sbjct 4125 CTGTCATGGCTACAGGAGGCAGCGCTCCACCAAGCGACAACATGCC-GGGTGCCGATGCC 4183
Query 2928 GTGGGCAATTCCTCCGGAAATTGGCATTGCGATTCCCAATGGCTGGAAAACGGAGTCGTC 2987
||||| | ||||| |||||||||| |||||||||| ||||| ||| ||| || ||
Sbjct 4184 GTGGGGAGCTCCTCGGGAAATTGGCGTTGCGATTCCAAATGGATGGGCAACCACGTGCTC 4243
Query 2988 ACTCGAACCACCCGAACCTGGGTCTTGCCCAGCTACAACAACCACCTGTACAAACGAATC 3047
|| ||||| | ||||||||| |||||||||||||| |||||| |||||| || |||
Sbjct 4244 ACCAAGTCCACCGGGACCTGGGTCCTGCCCAGCTACAACCACCACCAGTACAAGCGCATC 4303
Query 3048 CAAGGACCCAG-CGGAGGCNNNNNNNNNNNNNNATTCTTTGGATTCAGCACCCCCTGGGG 3106
||| || ||||| | |||| | | | || || |||||
Sbjct 4304 ----GACTCACACGGAGCCACCAGCAATGACAATTTCTACAGCTACTCTACTCCTTGGGG 4359
Query 3107 ATACTTTGACTACAATCGATTCCACTGCCACTTTTCCCCGCGAGACTGGCAACGACTCAT 3166
||||||||||| || || ||||| | ||||||||| || ||||||||||| | || |
Sbjct 4360 ATACTTTGACTTTAACCGCTTCCAGTACCACTTTTCACCCCGAGACTGGCAGGGCTTCGT 4419
Query 3167 CAACAACAACTGGGGCATCCGTCCCAAAGCGA-TGCGCTTTAGACTCTTTAACATCCAGG 3225
||||||||| ||||| ||||| ||| ||| || | ||| | || || ||| ||||||
Sbjct 4420 CAACAACAATTGGGGTATCCGGCCC-AAGAGACTTTCCTTCAAGCTGTTCAACGTCCAGG 4478
Query 3226 TTAAAGAGGTCACGGTCCAAGACTTCAACACCACCATCGGCAACAACCTCACCAGTACGG 3285
|||| |||||||| || || ||| |||||| ||| ||||||||||| ||
Sbjct 4479 TTAAGGAGGTCACTACGCAGGAGGGAGCCACGACCATCACCAATAACCTCACCAGCACCA 4538
Query 3286 TCCAGGTCTTTGCGGACAAGGACTACCAACTGCCGTACGTCCTCGGATCGGCTACCGAAG 3345
||||||||||||||||| ||||| ||| | ||| |||| || || || ||| |
Sbjct 4539 TCCAGGTCTTTGCGGACGCGGACTGCCAGTTCCCGCACGTGCTAGGCAACGCGCACGAGG 4598
Query 3346 GCACCTTCCCGCCGTTCCCAGCGGATATCTACACGATCCCGCAGTACGGGTACTGCACGC 3405
| || | || || ||||| || ||| ||| | || ||||||| |||||| ||
Sbjct 4599 GAACGCTGCCTCCCTTCCC----GACGTCTTCACCGTGCCCCAGTACGCCGACTGCA-GC 4653
Query 3406 TAAACTACAACAACGAGGCGGTGGATCGTTCGGC--CTTCTACTGTCTGGACTACTTTCC 3463
| ||| || || | || | || | || ||||| ||| || | ||| | |
Sbjct 4654 TCAACAACGGGGACAAAGC--CACAGCGCGCAGCAGCTTCTGCTGCCTCGGGTACATGCG 4711
Query 3464 CTCAGACATGCTGCGGACAGGAAATAACTTTGAGTTTACTTACACCTTCGAGGACGTTCC 3523
| ||||||||||| || || |||| | || | ||| || |||||||| ||
Sbjct 4712 GAGCCAGATGCTGCGGACCGGCAACAACTACGCCTTCATGTACCAGTTTGAGGACGTACC 4771
Query 3524 TTTCCATAGCATGTTTGCCCACAACCAGACGCTAGACCGGCTGATGAATCCCCTCGTGGA 3583
| || | |||| |||| ||||| || |||| |||||||| || || ||||
Sbjct 4772 CTCTCACTGGATGTACATGCACATCCAGAGCCTGGACCACCTGATGAAGCCGTTCATGGA 4831
Query 3584 TCAGTAC 3590
||||||
Sbjct 4832 CCAGTAC 4838
Score = 248 bits (274), Expect = 3e-62
Identities = 327/448 (73%), Gaps = 13/448 (3%)
Strand=Plus/Plus
Query 1198 TGGTGCCAGAAGAAATGGGGCAAGCGAAACACGCTGTGGCTGTTCGGACATGCGACCACC 1257
||||||| || || | ||| |||| ||| | | ||||| || |||| |||| ||||
Sbjct 2546 TGGTGCCGGAGAAAGTCTGGCCAGCGGAACGCCGTCTGGCTCTTTGGACCTGCGCCCACG 2605
Query 1258 GGCAAGACCAACATCGCGGAGGCTATTGCCCATGCTGTGCCGTTCTATGGATGCGTTAAC 1317
|| ||||||| | | |||| | ||| ||| ||||||||||| || ||||| |||| |||
Sbjct 2606 GGAAAGACCAGCGTTGCGGTGTCTACTGCGCATGCTGTGCCCTTTTATGGGCGCGTCAAC 2665
Query 1318 TGGACCAACGAGAACTTTCCGTTCAACGACTGCGTCGAAAAAATGATTATCTGGTGGGAG 1377
||||||| |||||||||| | || | || || || || || | | | || |||||||||
Sbjct 2666 TGGACCAGCGAGAACTTT-CTCTCCATGATTGTGTGGACAAGACGGTGATTTGGTGGGAG 2724
Query 1378 GAGGGCAAAATGACCGCCAAAGTGGTGGAAACAGCCAAGGCGATTCTGGGAGGATCTCGG 1437
||||||| ||| | |||||||| ||||| | ||| |||| || ||||| | |||||
Sbjct 2725 GAGGGCACGATGGCGGCCAAAGTCGTGGAGTCGGCCGAGGCCATCCTGGGGG---CTCGG 2781
Query 1438 --GTGAGAGTGGACCAAAAATGCAAAGCTTCGGTTCCGATCGAACCGACGCCGGTCATTA 1495
||| |||||||||| |||||| |||| ||| | || ||||| || |||||||| |
Sbjct 2782 CTGTGTGAGTGGACCAGAAATGC-AAGCCTCGCAGCAGACGGAACCCACACCGGTCATCA 2840
Query 1496 TTACCAGTAACACCAACATGTGTTATGTCATCGACGGGAACACGACCACGTTCGAGCATA 1555
| ||| ||||||||||||| | ||| ||||| ||| ||| || || || ||
Sbjct 2841 TCACCTCCAACACCAACATGTCCGTGGCCATTGACGGAAACTCGAAGACCTTTGAACACC 2900
Query 1556 AGCAGCCGTTGGAGGACAGGATGTTTAAGCTCGAATTGCTGACT---CGGTTGCCTGATG 1612
| |||||||| ||| | | ||||| ||| | ||| |||||| || ||| |
Sbjct 2901 AACAGCCGTTACAGGCCCGCATGTTCAAGTTTGAA---CTGACTTAGCGTTTGGTGCCAG 2957
Query 1613 ACTTTGGTAAGGTGACCAAACAGGAGGT 1640
||||||| || ||||| || ||||||||
Sbjct 2958 ACTTTGGGAAAGTGACTAAGCAGGAGGT 2985
Score = 78.8 bits (86), Expect = 3e-11
Identities = 117/164 (71%), Gaps = 3/164 (2%)
Strand=Plus/Plus
Query 2418 CCAGGCTACAATTATCTAGGCCCTTTCAACGGTCTAGATAAAGGAGAACCCGTCAACGAG 2477
|| || || || ||||| | || ||||||||||| ||||| ||||| | ||||| |
Sbjct 3689 CCGGGATATAAATATCTCAGTCCCTTCAACGGTCTGGATAAGGGAGACCTGGTCAATCGG 3748
Query 2478 GCAGACGCTGCCGCCTTAGAACACGACAAGGCTTACGACCTCGAAATCAAGGACGGGCAC 2537
|||||||| | ||| |||| || | ||||| ||| | | || ||| || |||
Sbjct 3749 GCAGACGCCGTCGCTCTAGAGCATG--AAGGC-TACAGCGAGCAGCTCGAGGCGGGACAC 3805
Query 2538 AACCCGTACTTTGAGTACAACGAGGCCGACAGACGTTTCCAGGA 2581
||||| | | | |||||||| | ||||||||| ||||||||
Sbjct 3806 AACCCCTCCCTCAAGTACAACCATGCCGACAGAGAGTTCCAGGA 3849
>seq99286
Length=7566
Score = 185 bits (204), Expect = 3e-43
Identities = 522/786 (66%), Gaps = 39/786 (5%)
Strand=Plus/Plus
Query 2837 AGCAGCAGCACCCGCCTCTAGTGTGGGATCATCTATCATGGCTGAAGGAGGTGGCGGCCC 2896
||||||||| |||| | | | ||| | | || ||||||| |||| ||||| ||
Sbjct 5613 AGCAGCAGCCCCCGTC---AATTTGGAACCTAATACAATGGCTGCAGGATGTGGCTCACC 5669
Query 2897 AGTGGGCGATG-CAGGCCAGGGTGCCGATGGAGTGGGCAATTCCTCCGGAAATTGGCATT 2955
||||| ||| || || || |||||| ||||||||| | ||| ||| ||||||||
Sbjct 5670 AGTGGACGACAACATGC-AGTGTGCCGCCGGAGTGGGCTCTGCCTGCGGTGATTGGCATG 5728
Query 2956 GCGATTCCCAATGGCTGGAAAACGGAGTCGTCACTCGAA---CCACCCGAACCTGGGTCT 3012
||||| || ||| ||| | || || ||| | || ||||| | ||| |||||
Sbjct 5729 GCGATACCAGGTGGATGGGAGACC---TCATCATTACAAAGTCCACCTGGACCGGGGTCC 5785
Query 3013 TGCCCAGCTACAACAACCACCTGTACAAACGAATCCAAGGACCCAGCGGAGGCNNNNNNN 3072
|||||| || ||||||||| | |||| || | | | ||| ||| |
Sbjct 5786 TGCCCACCTT-AACAACCACGTCTACAGGCGGACCACCAGTTCCACCGGCATCAGCAACA 5844
Query 3073 NNNNNNNATTCTTTGGATTCAGCACCCCCTGGGGA----TACTTTGACTACAATCGATTC 3128
| |||||| | |||||||| || || |||||||||| ||| |
Sbjct 5845 ACAACACCTACTTTGGTTACAGCACCCGA-GGAGAGCTGTACTTTGACTTCAA------C 5897
Query 3129 CACTGCCACTTTTCCCCGCGAGACTGGCAACGACTCATCAACAACAACTGGGGCATCCGT 3188
|||| ||||||||| | ||||||||||| | ||| |||| ||||||||||| ||||
Sbjct 5898 CACTTCCACTTTTCATCCCGAGACTGGCAGCATCTCGTCAATAACAACTGGGGTGTCCGG 5957
Query 3189 CCCAAAGCGATGCGCTTT-AGACTCTTTAACATCCAGGTTAAAGAGGTCACG---GTCCA 3244
||| ||| || || ||| | | || | ||| | || || ||||||||| |||
Sbjct 5958 CCC-AAGTGACTCGGTTTCAAGTTATTCACCATATAAGTCAAGGAGGTCACGACAGTC-- 6014
Query 3245 AGACTTCAACACCACCATCGGCAACAACCTCACCAGTACGGTCCAGGTCTTTGCGG--AC 3302
||| || | ||||||| ||| |||||||||| || ||||||| |||| || ||
Sbjct 6015 -GACAGCACAAAGACCATCGCCAATGACCTCACCAGCACCATCCAGGTGTTTGTGGACAC 6073
Query 3303 AAGGACTACCAACTGCCGTACGT-CCTCGGATCGGCTACCGAAGGCACCTTCCCGCCGTT 3361
| ||||| | || |||| ||| || | | | | | |||||| | | || || ||
Sbjct 6074 ACGGACTGTCGGCTCCCGTCCGTGACTGGCAATGCCCA-CGAAGGGTGCCTACCCCCATT 6132
Query 3362 CCCAGCGGATATCTACACGATCCCGCAGTACGGGTACTGCACGCTAAACTACAACAACGA 3421
|| || || ||| | ||| || || ||||| ||| || | ||| | || |
Sbjct 6133 TCCGGCCTATGTCTTTATGATGCCTCAATACGGATACCTGACTTTCAACAATGGGCACAA 6192
Query 3422 GGCGGTGGATCGTTCGGCCTTCTACTGTCTGGACTACTTTCCCTCAGACATGCTGCGGAC 3481
|| ||| | ||| ||| |||||||| | ||||||| | | ||||| | ||
Sbjct 6193 TGCCGTGCCCAGGAGCACCTACTATTGTCTGGAGTGCTTTCCCAGAAAAATGCTAAGAAC 6252
Query 3482 AGGAAATAACTTTGAGTTTACTTACACCTTCGAGGACGTTCCTTTCCA-TAGCATGTTTG 3540
||| || ||||||| |||| ||| ||| ||||| || ||||| || ||| ||||
Sbjct 6253 AGGCAACAACTTTGCCTTTAGGTACGACTTTGAGGAGGTACCTTTTCAGTAG-ATGTACA 6311
Query 3541 CCCACAACCAGA-CGCTAGACCGGCTGATGAATCCCCTCGTGGATCAGTACCTCTGGGCT 3599
|||| ||||| | || |||||||||||||| || || |||| ||||| | ||| |
Sbjct 6312 TACACAGCCAGAGCACT-GACCGGCTGATGAACCCGCTGTTGGACTAGTACTTGTGGACG 6370
Query 3600 TTCAGC 3605
|||||
Sbjct 6371 CTCAGC 6376
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 14882628067500
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