Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013- 09-15] 160,500 sequences; 1,926,439,238 total letters Query= NC_005889.1 Length=4693 Score E Sequences producing significant alignments: (Bits) Value seq86691 304 4e-79 seq99286 206 8e-50 >seq86691 Length=5340 Score = 304 bits (336), Expect = 4e-79 Identities = 484/686 (71%), Gaps = 30/686 (4%) Strand=Plus/Plus Query 2852 GGTGCCGAGGGAGTGGGTAATGCCTCCGGTGATTGGCATTGCGATTCCACTTGGTCAGAG 2911 |||||||| | ||||| | |||| || |||||| ||||||||||| ||| | Sbjct 4172 GGTGCCGATGCCGTGGGGAGCTCCTCGGGAAATTGGCGTTGCGATTCCAAATGGATGGGC 4231 Query 2912 AGCCACGTCACCACCACCTCAACCCGCACCTGGGTCCTGCCGACCTACAACAACCACCTG 2971 | |||||| ||||| || ||| | |||||||||||||| | ||||||| |||||| | Sbjct 4232 AACCACGTGCTCACCAAGTCCACCGGGACCTGGGTCCTGCCCAGCTACAACCACCACCAG 4291 Query 2972 TACCTGCGGCTCGGCTC-----GAGCAACGCCAGC---GACACCTTCAACGGATTCTCCA 3023 ||| ||| ||| ||| |||| || |||| |||| ||| || | | ||| | Sbjct 4292 TACAAGCGCATCGACTCACACGGAGCCAC--CAGCAATGACAATTTCTACAGCTACTCTA 4349 Query 3024 CCCCCTGGGGATACTTTGACTTTAACCGCTTCCACTGCCACTTCTCGCCAAGAGACTGGC 3083 | || ||||||||||||||||||||||||||||| | |||||| || || ||||||||| Sbjct 4350 CTCCTTGGGGATACTTTGACTTTAACCGCTTCCAGTACCACTTTTCACCCCGAGACTGGC 4409 Query 3084 AAAGGCTCATCAACAACCACTGGGGACTGCGCCCCAAAAGCATGCAAGTCCGCATCTTCA 3143 | | || |||||||| | ||||| | || ||||| || | || | |||| Sbjct 4410 AGGGCTTCGTCAACAACAATTGGGGTATCCGGCCCAAGAGACTTTCCTTCAAGCTGTTCA 4469 Query 3144 ACATCCAAGTTAAGGAGGTCACGACGTCTAACGGGGAGACGACCGTATCCAACAACCTCA 3203 || |||| |||||||||||||| ||| | || | |||||| | |||| ||||||| Sbjct 4470 ACGTCCAGGTTAAGGAGGTCACTACGCAGGAGGGAGCCACGACCATCACCAATAACCTCA 4529 Query 3204 CCAGCACGGTCCAGATCTTTGCGGAC-AGCACGTACGAGCTCCCGTACGTGATGGATGCA 3262 ||||||| ||||| ||||||||||| | || | | || ||||| ||||| | | ||| Sbjct 4530 CCAGCACCATCCAGGTCTTTGCGGACGCGGAC-TGCCAGTTCCCGCACGTGCT--AGGCA 4586 Query 3263 --GGTCAGGAGGGCAGCTTGCCTCCTTTCCCCAACGACGTGTTCATGGTGCCTCAGTACG 3320 | || ||||| | ||||||| |||| |||||| |||| ||||| ||||||| Sbjct 4587 ACGCGCACGAGGGAACGCTGCCTCCCTTCC----CGACGTCTTCACCGTGCCCCAGTACG 4642 Query 3321 GGTACTGCGGACTGGTAACCGGAGGCAGCTCTCAAAACCAGACAGACAGAAATGCCTTCT 3380 ||||| | || | ||| | |||| || |||| | | ||||| Sbjct 4643 CCGACTGCAG-CTCAACAACGGGG-------ACAAAGCC--ACAGCGCGCAGCAGCTTCT 4692 Query 3381 ACTGTCTGGAGTACTTTCCCAGCCAGATGCTGAGAACCGGAAACAACTTTGAGATGGTGT 3440 ||| || | |||| | | |||||||||||| | ||||| ||||||| | | ||| Sbjct 4693 GCTGCCTCGGGTACATGCGGAGCCAGATGCTGCGGACCGGCAACAACTACGCCTTCATGT 4752 Query 3441 ACAAGTTTGAAAACGTGCCCTTCCACTCCATGTACGCTCACAGCCAGAGCCTGGATAGGC 3500 || ||||||| |||| |||| |||| |||||| |||| |||||||||||| | Sbjct 4753 ACCAGTTTGAGGACGTACCCTCTCACTGGATGTACATGCACATCCAGAGCCTGGACCACC 4812 Query 3501 TGATGAACCCGCTGCTGGACCAGTAC 3526 ||||||| ||| | ||||||||||| Sbjct 4813 TGATGAAGCCGTTCATGGACCAGTAC 4838 Score = 255 bits (282), Expect = 2e-64 Identities = 530/785 (68%), Gaps = 14/785 (2%) Strand=Plus/Plus Query 1025 TACATGGCGCTGGTAAGCTGGCTGGTGGAACATGGCATCACTTCCGAGAAGCAGTGGATT 1084 ||||||| ||| || | |||||||||||| ||||| || || |||| ||| ||||| Sbjct 2264 TACATGGAGCTCGTTAACTGGCTGGTGGAGATCGGCATTACGTCAGAGA-GCAACGGATT 2322 Query 1085 CAGGAGAATCAGGAGAGCTACCTGTCCTTCAACTCCACGGGAAACTCTCGGAGCCAGATT 1144 |||||||| ||||| || | || | |||| | ||||| | | || || | Sbjct 2323 CAGGAGAAGCAGGAATCCTGTATCTCTTACAACGCGACGGGCGATGCCCGCTTGCAAAAC 2382 Query 1145 AAAGCCGCGCTTGACAACGCGTCAAAAATTATGAGTCTGACCAAATCTGCCTCAGACTAT 1204 || | || || |||||||| |||| || | ||||||| | ||||||||| Sbjct 2383 AAGTCGGCTCTGGACAACGCCGGCCAAATCGTGGGCCTGACCACCACGGCCTCAGACGGC 2442 Query 1205 CTCGTGGGA--CAGACTGTTCCAGAGGACATTTCTGAAAACAGAATCTGGCAGATTTTTG 1262 | || || | || | |||||| ||| || || | ||| | || ||| Sbjct 2443 CGGGTCGGTTCCGCACCG--CCAGAG--CATCGAGGACGACCGCATCCGCTGCATCTTTC 2498 Query 1263 ATCTCAACGGCTACGACCCGGCATACGCGGGCTCTGTTCTCTACGGCTGGTGCACTCGCG 1322 | ||| |||||| || |||||| ||||| ||||| || | | ||||||| | Sbjct 2499 ACCTCCACGGCTGCGGCCCGGCCTACGCCGGCTCCGTGGTGCTGGCCTGGTGCCGGAGAA 2558 Query 1323 CCTTTGGAAAGAGGAACACCGTCTGGCTGTATGGACCCGCGACCACCGGAAAGACCAACA 1382 | ||| || ||||| |||||||||| | |||||| ||| |||| |||||||||| | Sbjct 2559 AGTCTGGCCAGCGGAACGCCGTCTGGCTCTTTGGACCTGCGCCCACGGGAAAGACCAGCG 2618 Query 1383 TCGCGGAAGCCATCTCTCACACCGTGCCCTTTTATGGCTGTGTGAACTGGACTAATGAGA 1442 | |||| | | | || | |||||||||||||| | || |||||||| | |||| Sbjct 2619 TTGCGGTGTCTACTGCGCATGCTGTGCCCTTTTATGGGCGCGTCAACTGGACCAGCGAGA 2678 Query 1443 ACTTNNNNNNNNNNNNNNNNNNNGAAAAAATGTTGATCTGGTGGGAGGAGGGAAAGATGA 1502 |||| || || | | |||| |||||||||||||| | |||| Sbjct 2679 ACTTTCTCTCCATGATTGTGTG-GACAAGACGGTGATTTGGTGGGAGGAGGGCACGATGG 2737 Query 1503 CCAGCAAGGTGGTGGAACCCGCCAAGGCCATCTTgggggggTCTAGAGTACGAGTGGATC 1562 | ||| || ||||| | ||| |||||||| |||||| || || ||||||| | Sbjct 2738 CGGCCAAAGTCGTGGAGTCGGCCGAGGCCATCCTGGGGGC-TCGGCTGTGTGAGTGGACC 2796 Query 1563 AAAAATGTAAATCCTCTGTACAAGTAGACTCTACCCCGGTGATTATCACCTCCAATACTA 1622 | ||||| || |||| || || | || ||||| || ||||||||||| || | Sbjct 2797 AGAAATGCAAG-CCTCGCAGCAGACGGAACCCACACCGGTCATCATCACCTCCAACACCA 2855 Query 1623 ACATGTGTGTGGTGGTGGATGGGAACTCCACGACCTTTGAACACCAGCAGCCGCTGGAAG 1682 |||||| |||| | || || ||||| | ||||||||||||||| |||||| | | | Sbjct 2856 ACATGTCCGTGGCCATTGACGGAAACTCGAAGACCTTTGAACACCAACAGCCGTTACAGG 2915 Query 1683 ACCGCATGTTCAGATTTGAACTCATGCGGCGGCTCCCGCCAGATTTTGGCAAGATTACCA 1742 ||||||||||| |||||||| | ||| | |||||| ||||| || | || | Sbjct 2916 CCCGCATGTTCAAGTTTGAACTGACTTAGCGTTTGGTGCCAGACTTTGGGAAAGTGACTA 2975 Query 1743 AGCAGGAAGTCAAAGACTTTTTTGCTTGGGCAAAGGTCAACCAGGTGCCGGTGACTCACG 1802 ||||||| ||||||||| |||||||||||| | |||| || | ||| |||||| Sbjct 2976 AGCAGGAGGTCAAAGAC--TTTTGCTTGGGCCGTCGCCAACGAGCATCGGGT--CTCACG 3031 Query 1803 AGTTT 1807 ||||| Sbjct 3032 AGTTT 3036 Score = 105 bits (116), Expect = 2e-19 Identities = 148/207 (71%), Gaps = 3/207 (1%) Strand=Plus/Plus Query 2337 CTCGAGGTCTTGTGCTTCCTGGGTACAAGTATCTTGGTCCTGGGAACGGCCTTGATAAGG 2396 |||| | ||| || ||||| || || || ||||| |||| ||||| || ||||||| Sbjct 3672 CTCGGGTTCTGGTCCTTCCGGGATATAAATATCTCAGTCCCTTCAACGGTCTGGATAAGG 3731 Query 2397 GCGATCCTGTCAATTTTGCTGACGAGGTTGCCCGAGAGCACGACCTCTCCTACCAGAAAC 2456 | || | |||||| || |||| || || | |||||| || || | | || | Sbjct 3732 GAGACCTGGTCAATCGGGCAGACGCCGTCGCTCTAGAGCATGAAGGCTACAGCGAG---C 3788 Query 2457 AGCTTGAGGCGGGCGATAACCCTTACCTCAAGTACAACCACGCGGACGCAGAGTTTCAGG 2516 |||| |||||||| | ||||| | ||||||||||||||| || ||| |||||| |||| Sbjct 3789 AGCTCGAGGCGGGACACAACCCCTCCCTCAAGTACAACCATGCCGACAGAGAGTTCCAGG 3848 Query 2517 AGAAACTCGCTTCTGACACTTCTTTTG 2543 |||| ||| || ||| | | ||||| Sbjct 3849 AGAAGCTCTCTGACGACCCCTGTTTTG 3875 >seq99286 Length=7566 Score = 206 bits (228), Expect = 8e-50 Identities = 482/707 (68%), Gaps = 44/707 (6%) Strand=Plus/Plus Query 2853 GTGCCGAGGGAGTGGGTAATGCCTCCGGTGATTGGCATTGCGATTCCACTTGG-TCAGAG 2911 |||||| |||||||| ||||| ||||||||||||| ||||| ||| ||| | ||| Sbjct 5690 GTGCCGCCGGAGTGGGCTCTGCCTGCGGTGATTGGCATGGCGATACCAGGTGGATGGGAG 5749 Query 2912 AGCCACGTCACCACCACCTCAACCCGCACCTGGGTCCTGCCGACCTACAACAACCACCTG 2971 | || | ||| || | || ||| | ||| |||||||||| |||| ||||||||| | Sbjct 5750 A-CCTCATCATTACAAAGTCCACCTGGACCGGGGTCCTGCCCACCTT-AACAACCACGTC 5807 Query 2972 TACCTGCGGCTCGGC---TCGA---GCAAC-GC--CAGCGACACCTTCAACGGATTCTCC 3022 ||| |||| | | || | ||| | || || | |||||| | || | | | Sbjct 5808 TACAGGCGGACCACCAGTTCCACCGGCATCAGCAACAACAACACCTACTTTGGTTACAGC 5867 Query 3023 ACCCCCTGGGGA----TACTTTGACTTTAACCGCTTCCACTGCCACTTCTCGCCAAGAGA 3078 |||| || || ||||||||||| |||| |||||||| ||| || |||| Sbjct 5868 ACCCGA-GGAGAGCTGTACTTTGACTTCAACCACTTCCACTT----TTCATCCC--GAGA 5920 Query 3079 CTGGCAAAGGCTCATCAACAACCACTGGGGACTGCGCCCCAAAAGCATGCAAGTCCGCAT 3138 |||||| ||| |||| ||| ||||||| | || ||||| | | || | Sbjct 5921 CTGGCAGCATCTCGTCAATAACAACTGGGGTGTCCGGCCCAAGTGACTCGGTTTCAAGTT 5980 Query 3139 CTTCAACATCCAAGTTAAGGAGGTCACGAC-GTCTAACGGGGAGACGACCGTATCCAACA 3197 |||| ||| |||| |||||||||||||| ||| | | | | |||| | |||| Sbjct 5981 ATTCACCATATAAGTCAAGGAGGTCACGACAGTCGACAGCACAAA-GACCATCGCCAATG 6039 Query 3198 ACCTCACCAGCACGGTCCAGATCTTTGCGGACAGCACGTACGA---GCTCCCGTACGTGA 3254 ||||||||||||| ||||| | |||| ||||| |||| || |||||||| ||||| Sbjct 6040 ACCTCACCAGCACCATCCAGGTGTTTGTGGACA-CACGGACTGTCGGCTCCCGTCCGTGA 6098 Query 3255 -TGG--ATGCAGGTCAGGAGGGCAGCTTGCCTCCTTTCCCCAACGACGTGTTCATGGTGC 3311 ||| |||| || || || || | || || || || | | || || ||| ||| Sbjct 6099 CTGGCAATGCC---CACGAAGGGTGCCTACCCCCATTTCCGGCCTATGTCTTTATGATGC 6155 Query 3312 CTCAGTACGGGTACTGCGGACTGGTAACCGGAGGCAGCTCTCAAAACCAGACAGACAGAA 3371 |||| ||||| ||| | |||| ||| |||| ||| || | ||| | Sbjct 6156 CTCAATACGGATAC--CTGACTTTCAACAATGGGCA-----CAATGCCGTGCC--CAGGA 6206 Query 3372 ATGCCTTCTACTGTCTGGAGTACTTTCCCAGCCAGATGCTGAGAACCGGAAACAACTTTG 3431 ||| ||| |||||||||| ||||||||| | ||||| ||||| || |||||||||| Sbjct 6207 GCACCTACTATTGTCTGGAGTGCTTTCCCAGAAAAATGCTAAGAACAGGCAACAACTTTG 6266 Query 3432 AGATGGTGTACAAGTTTGAAAACGTGCCCTTCCACTCCATGTACGCTCACAGCCAGAGCC 3491 | |||| | ||||| | || || || || | |||||| |||||||||||| Sbjct 6267 CCTTTAGGTACGACTTTGAGGAGGTACCTTTTCAGTAGATGTACATACACAGCCAGAGCA 6326 Query 3492 TGGATAGGCTGATGAACCCGCTGCTGGACCAGTACCTGTGGGAGCTC 3538 || ||||||||||||||||| ||||| ||||| ||||| |||| Sbjct 6327 CTGACCGGCTGATGAACCCGCTGTTGGACTAGTACTTGTGGACGCTC 6373 Score = 199 bits (220), Expect = 1e-47 Identities = 308/435 (71%), Gaps = 10/435 (2%) Strand=Plus/Plus Query 4034 TGGCAGGACAGAGACATTTACTACCAAGGGCCCATTTGGGCCAAAATTCCACACACGGAT 4093 |||||| || ||||||| ||| ||| || | || |||||||| |||||||||| || Sbjct 6822 TGGCAGAACTGAGACATCTACCTCCAGGGCCTGATCTGGGCCAAGGTTCCACACACTGAC 6881 Query 4094 GGACACTTTCACCCGTCTCCTCTCATTGGCGGATTTGGACTGAA-AAGCCCGCCTCCACA 4152 ||||||||| | | |||||||||||| || |||||||| || || |||||| ||||| || Sbjct 6882 GGACACTTTTATCTGTCTCCTCTCATGGGGGGATTTGGTCTCAAGAAGCCC-CCTCCTCA 6940 Query 4153 AATATTCATCAAAAACACTCCTGTACCCGCCAATCCCGCAACGACCTTCTCTCCGGCCAG 4212 || | |||| ||||| || || | ||| | || || | ||| | | || Sbjct 6941 GATCCTGGTCAAGAACACCCCGGTTACTGCCGACCCTCCAGTGGAATTCACAAGTGACAA 7000 Query 4213 AATCAACAGCTTCATCACCCAGTACAGCACCGGACAGGTGGCTGTCAAAATAGAATGGGA 4272 |||||||||||||||| || || ||||| ||||| || | || |||| ||||||| Sbjct 7001 GCTCAACAGCTTCATCACTCAATATAGCACTGGACAAGTAACCGTGGAAATTAAATGGGA 7060 Query 4273 AATCCAGAAGGAGCGGTCCAAGAGATGGAACCCAGAGGTCCAGTTCACGTCCAACTACGG 4332 | ||| |||| |||||||| ||||||||||| | || | ||| ||||||| | Sbjct 7061 GCTGCAGCTGGAGGACTCCAAGAGGTGGAACCCAGAAATTCAATACACTTCCAACTTCAA 7120 Query 4333 AGCACAGGACTCGCTTC-TCTGGGCTCCCGACAACGCCGGAGCCTACAAAGAGCCCAGGG 4391 | |||| | | || || || ||| ||||| | || | |||| ||||| |||| Sbjct 7121 CGTGCAGG-CAGACATCGACTTTGCCCCCAACAACTCTGGTGTCTACTCAGAGCTGAGGG 7179 Query 4392 CCATTGGATCCCGATACCTCACCAACCACCTCTA------GCCCAATTCTGTTGCATACC 4445 || ||| |||| | || | | || ||||||| | ||| ||||||||||||| Sbjct 7180 TTATCGGAACCCGCTGGCTTATCCACAACCTCTAACCCCCGGCCATGTCTGTTGCATACC 7239 Query 4446 CTCAATAAACCGTGT 4460 | ||||||||| ||| Sbjct 7240 CACAATAAACCATGT 7254 Score = 152 bits (168), Expect = 2e-33 Identities = 217/304 (71%), Gaps = 1/304 (0%) Strand=Plus/Plus Query 2304 AACCCAAGGCC-AATCAACAGAAGCAAGATAACGCTCGAGGTCTTGTGCTTCCTGGGTAC 2362 || || ||||| || || || ||||||| ||||| ||||| || ||||| || | Sbjct 5164 AAACCGAGGCCTAACCAGCAACAGCAAGACTCTGCTCGGGGTCTGGTCCTTCCAGGATGT 5223 Query 2363 AAGTATCTTGGTCCTGGGAACGGCCTTGATAAGGGCGATCCTGTCAATTTTGCTGACGAG 2422 || ||||| ||||| ||||| || ||||| || | | || || || ||| Sbjct 5224 AAATATCTCGGTCCCCTCAACGGTCTCGATAAAGGAGGCGCGGTTAACAGAGCAGACACC 5283 Query 2423 GTTGCCCGAGAGCACGACCTCTCCTACCAGAAACAGCTTGAGGCGGGCGATAACCCTTAC 2482 |||||||||||||||| || ||||| | ||||| ||||| || || || |||||| Sbjct 5284 ACTGCCCGAGAGCACGACATCAACTACCGCGAGCAGCTGGAGGCAGGAGACAATCCTTAC 5343 Query 2483 CTCAAGTACAACCACGCGGACGCAGAGTTTCAGGAGAAACTCGCTTCTGACACTTCTTTT 2542 ||||||| |||| || | ||| ||| |||||| |||| ||| || ||||| | |||| Sbjct 5344 CTCAAGTCCAACGACACTGACCGAGACTTTCAGAAGAAGCTCTCTGACGACACCTTTTTT 5403 Query 2543 GGGGGAAACCTTGGGAAGGCTGTTTTCCAGGCTAAAAAGAGGATTCTCGAACCTCTTGGC 2602 |||||||||| ||||| || ||| |||| || ||||| | || || ||| |||| Sbjct 5404 GGGGGAAACCAAAAAAAGGCAGTCTTCTAGGCCAAGAAGAGTCTGCTGGAGCCTTTTGGT 5463 Query 2603 CTGG 2606 |||| Sbjct 5464 CTGG 5467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14879433685000