Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013-
09-15] 160,500 sequences; 1,926,439,238 total letters
Query= NC_005889.1
Length=4693
Score E
Sequences producing significant alignments: (Bits) Value
seq86691 304 4e-79
seq99286 206 8e-50
>seq86691
Length=5340
Score = 304 bits (336), Expect = 4e-79
Identities = 484/686 (71%), Gaps = 30/686 (4%)
Strand=Plus/Plus
Query 2852 GGTGCCGAGGGAGTGGGTAATGCCTCCGGTGATTGGCATTGCGATTCCACTTGGTCAGAG 2911
|||||||| | ||||| | |||| || |||||| ||||||||||| ||| |
Sbjct 4172 GGTGCCGATGCCGTGGGGAGCTCCTCGGGAAATTGGCGTTGCGATTCCAAATGGATGGGC 4231
Query 2912 AGCCACGTCACCACCACCTCAACCCGCACCTGGGTCCTGCCGACCTACAACAACCACCTG 2971
| |||||| ||||| || ||| | |||||||||||||| | ||||||| |||||| |
Sbjct 4232 AACCACGTGCTCACCAAGTCCACCGGGACCTGGGTCCTGCCCAGCTACAACCACCACCAG 4291
Query 2972 TACCTGCGGCTCGGCTC-----GAGCAACGCCAGC---GACACCTTCAACGGATTCTCCA 3023
||| ||| ||| ||| |||| || |||| |||| ||| || | | ||| |
Sbjct 4292 TACAAGCGCATCGACTCACACGGAGCCAC--CAGCAATGACAATTTCTACAGCTACTCTA 4349
Query 3024 CCCCCTGGGGATACTTTGACTTTAACCGCTTCCACTGCCACTTCTCGCCAAGAGACTGGC 3083
| || ||||||||||||||||||||||||||||| | |||||| || || |||||||||
Sbjct 4350 CTCCTTGGGGATACTTTGACTTTAACCGCTTCCAGTACCACTTTTCACCCCGAGACTGGC 4409
Query 3084 AAAGGCTCATCAACAACCACTGGGGACTGCGCCCCAAAAGCATGCAAGTCCGCATCTTCA 3143
| | || |||||||| | ||||| | || ||||| || | || | ||||
Sbjct 4410 AGGGCTTCGTCAACAACAATTGGGGTATCCGGCCCAAGAGACTTTCCTTCAAGCTGTTCA 4469
Query 3144 ACATCCAAGTTAAGGAGGTCACGACGTCTAACGGGGAGACGACCGTATCCAACAACCTCA 3203
|| |||| |||||||||||||| ||| | || | |||||| | |||| |||||||
Sbjct 4470 ACGTCCAGGTTAAGGAGGTCACTACGCAGGAGGGAGCCACGACCATCACCAATAACCTCA 4529
Query 3204 CCAGCACGGTCCAGATCTTTGCGGAC-AGCACGTACGAGCTCCCGTACGTGATGGATGCA 3262
||||||| ||||| ||||||||||| | || | | || ||||| ||||| | | |||
Sbjct 4530 CCAGCACCATCCAGGTCTTTGCGGACGCGGAC-TGCCAGTTCCCGCACGTGCT--AGGCA 4586
Query 3263 --GGTCAGGAGGGCAGCTTGCCTCCTTTCCCCAACGACGTGTTCATGGTGCCTCAGTACG 3320
| || ||||| | ||||||| |||| |||||| |||| ||||| |||||||
Sbjct 4587 ACGCGCACGAGGGAACGCTGCCTCCCTTCC----CGACGTCTTCACCGTGCCCCAGTACG 4642
Query 3321 GGTACTGCGGACTGGTAACCGGAGGCAGCTCTCAAAACCAGACAGACAGAAATGCCTTCT 3380
||||| | || | ||| | |||| || |||| | | |||||
Sbjct 4643 CCGACTGCAG-CTCAACAACGGGG-------ACAAAGCC--ACAGCGCGCAGCAGCTTCT 4692
Query 3381 ACTGTCTGGAGTACTTTCCCAGCCAGATGCTGAGAACCGGAAACAACTTTGAGATGGTGT 3440
||| || | |||| | | |||||||||||| | ||||| ||||||| | | |||
Sbjct 4693 GCTGCCTCGGGTACATGCGGAGCCAGATGCTGCGGACCGGCAACAACTACGCCTTCATGT 4752
Query 3441 ACAAGTTTGAAAACGTGCCCTTCCACTCCATGTACGCTCACAGCCAGAGCCTGGATAGGC 3500
|| ||||||| |||| |||| |||| |||||| |||| |||||||||||| |
Sbjct 4753 ACCAGTTTGAGGACGTACCCTCTCACTGGATGTACATGCACATCCAGAGCCTGGACCACC 4812
Query 3501 TGATGAACCCGCTGCTGGACCAGTAC 3526
||||||| ||| | |||||||||||
Sbjct 4813 TGATGAAGCCGTTCATGGACCAGTAC 4838
Score = 255 bits (282), Expect = 2e-64
Identities = 530/785 (68%), Gaps = 14/785 (2%)
Strand=Plus/Plus
Query 1025 TACATGGCGCTGGTAAGCTGGCTGGTGGAACATGGCATCACTTCCGAGAAGCAGTGGATT 1084
||||||| ||| || | |||||||||||| ||||| || || |||| ||| |||||
Sbjct 2264 TACATGGAGCTCGTTAACTGGCTGGTGGAGATCGGCATTACGTCAGAGA-GCAACGGATT 2322
Query 1085 CAGGAGAATCAGGAGAGCTACCTGTCCTTCAACTCCACGGGAAACTCTCGGAGCCAGATT 1144
|||||||| ||||| || | || | |||| | ||||| | | || || |
Sbjct 2323 CAGGAGAAGCAGGAATCCTGTATCTCTTACAACGCGACGGGCGATGCCCGCTTGCAAAAC 2382
Query 1145 AAAGCCGCGCTTGACAACGCGTCAAAAATTATGAGTCTGACCAAATCTGCCTCAGACTAT 1204
|| | || || |||||||| |||| || | ||||||| | |||||||||
Sbjct 2383 AAGTCGGCTCTGGACAACGCCGGCCAAATCGTGGGCCTGACCACCACGGCCTCAGACGGC 2442
Query 1205 CTCGTGGGA--CAGACTGTTCCAGAGGACATTTCTGAAAACAGAATCTGGCAGATTTTTG 1262
| || || | || | |||||| ||| || || | ||| | || |||
Sbjct 2443 CGGGTCGGTTCCGCACCG--CCAGAG--CATCGAGGACGACCGCATCCGCTGCATCTTTC 2498
Query 1263 ATCTCAACGGCTACGACCCGGCATACGCGGGCTCTGTTCTCTACGGCTGGTGCACTCGCG 1322
| ||| |||||| || |||||| ||||| ||||| || | | ||||||| |
Sbjct 2499 ACCTCCACGGCTGCGGCCCGGCCTACGCCGGCTCCGTGGTGCTGGCCTGGTGCCGGAGAA 2558
Query 1323 CCTTTGGAAAGAGGAACACCGTCTGGCTGTATGGACCCGCGACCACCGGAAAGACCAACA 1382
| ||| || ||||| |||||||||| | |||||| ||| |||| |||||||||| |
Sbjct 2559 AGTCTGGCCAGCGGAACGCCGTCTGGCTCTTTGGACCTGCGCCCACGGGAAAGACCAGCG 2618
Query 1383 TCGCGGAAGCCATCTCTCACACCGTGCCCTTTTATGGCTGTGTGAACTGGACTAATGAGA 1442
| |||| | | | || | |||||||||||||| | || |||||||| | ||||
Sbjct 2619 TTGCGGTGTCTACTGCGCATGCTGTGCCCTTTTATGGGCGCGTCAACTGGACCAGCGAGA 2678
Query 1443 ACTTNNNNNNNNNNNNNNNNNNNGAAAAAATGTTGATCTGGTGGGAGGAGGGAAAGATGA 1502
|||| || || | | |||| |||||||||||||| | ||||
Sbjct 2679 ACTTTCTCTCCATGATTGTGTG-GACAAGACGGTGATTTGGTGGGAGGAGGGCACGATGG 2737
Query 1503 CCAGCAAGGTGGTGGAACCCGCCAAGGCCATCTTgggggggTCTAGAGTACGAGTGGATC 1562
| ||| || ||||| | ||| |||||||| |||||| || || ||||||| |
Sbjct 2738 CGGCCAAAGTCGTGGAGTCGGCCGAGGCCATCCTGGGGGC-TCGGCTGTGTGAGTGGACC 2796
Query 1563 AAAAATGTAAATCCTCTGTACAAGTAGACTCTACCCCGGTGATTATCACCTCCAATACTA 1622
| ||||| || |||| || || | || ||||| || ||||||||||| || |
Sbjct 2797 AGAAATGCAAG-CCTCGCAGCAGACGGAACCCACACCGGTCATCATCACCTCCAACACCA 2855
Query 1623 ACATGTGTGTGGTGGTGGATGGGAACTCCACGACCTTTGAACACCAGCAGCCGCTGGAAG 1682
|||||| |||| | || || ||||| | ||||||||||||||| |||||| | | |
Sbjct 2856 ACATGTCCGTGGCCATTGACGGAAACTCGAAGACCTTTGAACACCAACAGCCGTTACAGG 2915
Query 1683 ACCGCATGTTCAGATTTGAACTCATGCGGCGGCTCCCGCCAGATTTTGGCAAGATTACCA 1742
||||||||||| |||||||| | ||| | |||||| ||||| || | || |
Sbjct 2916 CCCGCATGTTCAAGTTTGAACTGACTTAGCGTTTGGTGCCAGACTTTGGGAAAGTGACTA 2975
Query 1743 AGCAGGAAGTCAAAGACTTTTTTGCTTGGGCAAAGGTCAACCAGGTGCCGGTGACTCACG 1802
||||||| ||||||||| |||||||||||| | |||| || | ||| ||||||
Sbjct 2976 AGCAGGAGGTCAAAGAC--TTTTGCTTGGGCCGTCGCCAACGAGCATCGGGT--CTCACG 3031
Query 1803 AGTTT 1807
|||||
Sbjct 3032 AGTTT 3036
Score = 105 bits (116), Expect = 2e-19
Identities = 148/207 (71%), Gaps = 3/207 (1%)
Strand=Plus/Plus
Query 2337 CTCGAGGTCTTGTGCTTCCTGGGTACAAGTATCTTGGTCCTGGGAACGGCCTTGATAAGG 2396
|||| | ||| || ||||| || || || ||||| |||| ||||| || |||||||
Sbjct 3672 CTCGGGTTCTGGTCCTTCCGGGATATAAATATCTCAGTCCCTTCAACGGTCTGGATAAGG 3731
Query 2397 GCGATCCTGTCAATTTTGCTGACGAGGTTGCCCGAGAGCACGACCTCTCCTACCAGAAAC 2456
| || | |||||| || |||| || || | |||||| || || | | || |
Sbjct 3732 GAGACCTGGTCAATCGGGCAGACGCCGTCGCTCTAGAGCATGAAGGCTACAGCGAG---C 3788
Query 2457 AGCTTGAGGCGGGCGATAACCCTTACCTCAAGTACAACCACGCGGACGCAGAGTTTCAGG 2516
|||| |||||||| | ||||| | ||||||||||||||| || ||| |||||| ||||
Sbjct 3789 AGCTCGAGGCGGGACACAACCCCTCCCTCAAGTACAACCATGCCGACAGAGAGTTCCAGG 3848
Query 2517 AGAAACTCGCTTCTGACACTTCTTTTG 2543
|||| ||| || ||| | | |||||
Sbjct 3849 AGAAGCTCTCTGACGACCCCTGTTTTG 3875
>seq99286
Length=7566
Score = 206 bits (228), Expect = 8e-50
Identities = 482/707 (68%), Gaps = 44/707 (6%)
Strand=Plus/Plus
Query 2853 GTGCCGAGGGAGTGGGTAATGCCTCCGGTGATTGGCATTGCGATTCCACTTGG-TCAGAG 2911
|||||| |||||||| ||||| ||||||||||||| ||||| ||| ||| | |||
Sbjct 5690 GTGCCGCCGGAGTGGGCTCTGCCTGCGGTGATTGGCATGGCGATACCAGGTGGATGGGAG 5749
Query 2912 AGCCACGTCACCACCACCTCAACCCGCACCTGGGTCCTGCCGACCTACAACAACCACCTG 2971
| || | ||| || | || ||| | ||| |||||||||| |||| ||||||||| |
Sbjct 5750 A-CCTCATCATTACAAAGTCCACCTGGACCGGGGTCCTGCCCACCTT-AACAACCACGTC 5807
Query 2972 TACCTGCGGCTCGGC---TCGA---GCAAC-GC--CAGCGACACCTTCAACGGATTCTCC 3022
||| |||| | | || | ||| | || || | |||||| | || | | |
Sbjct 5808 TACAGGCGGACCACCAGTTCCACCGGCATCAGCAACAACAACACCTACTTTGGTTACAGC 5867
Query 3023 ACCCCCTGGGGA----TACTTTGACTTTAACCGCTTCCACTGCCACTTCTCGCCAAGAGA 3078
|||| || || ||||||||||| |||| |||||||| ||| || ||||
Sbjct 5868 ACCCGA-GGAGAGCTGTACTTTGACTTCAACCACTTCCACTT----TTCATCCC--GAGA 5920
Query 3079 CTGGCAAAGGCTCATCAACAACCACTGGGGACTGCGCCCCAAAAGCATGCAAGTCCGCAT 3138
|||||| ||| |||| ||| ||||||| | || ||||| | | || |
Sbjct 5921 CTGGCAGCATCTCGTCAATAACAACTGGGGTGTCCGGCCCAAGTGACTCGGTTTCAAGTT 5980
Query 3139 CTTCAACATCCAAGTTAAGGAGGTCACGAC-GTCTAACGGGGAGACGACCGTATCCAACA 3197
|||| ||| |||| |||||||||||||| ||| | | | | |||| | ||||
Sbjct 5981 ATTCACCATATAAGTCAAGGAGGTCACGACAGTCGACAGCACAAA-GACCATCGCCAATG 6039
Query 3198 ACCTCACCAGCACGGTCCAGATCTTTGCGGACAGCACGTACGA---GCTCCCGTACGTGA 3254
||||||||||||| ||||| | |||| ||||| |||| || |||||||| |||||
Sbjct 6040 ACCTCACCAGCACCATCCAGGTGTTTGTGGACA-CACGGACTGTCGGCTCCCGTCCGTGA 6098
Query 3255 -TGG--ATGCAGGTCAGGAGGGCAGCTTGCCTCCTTTCCCCAACGACGTGTTCATGGTGC 3311
||| |||| || || || || | || || || || | | || || ||| |||
Sbjct 6099 CTGGCAATGCC---CACGAAGGGTGCCTACCCCCATTTCCGGCCTATGTCTTTATGATGC 6155
Query 3312 CTCAGTACGGGTACTGCGGACTGGTAACCGGAGGCAGCTCTCAAAACCAGACAGACAGAA 3371
|||| ||||| ||| | |||| ||| |||| ||| || | ||| |
Sbjct 6156 CTCAATACGGATAC--CTGACTTTCAACAATGGGCA-----CAATGCCGTGCC--CAGGA 6206
Query 3372 ATGCCTTCTACTGTCTGGAGTACTTTCCCAGCCAGATGCTGAGAACCGGAAACAACTTTG 3431
||| ||| |||||||||| ||||||||| | ||||| ||||| || ||||||||||
Sbjct 6207 GCACCTACTATTGTCTGGAGTGCTTTCCCAGAAAAATGCTAAGAACAGGCAACAACTTTG 6266
Query 3432 AGATGGTGTACAAGTTTGAAAACGTGCCCTTCCACTCCATGTACGCTCACAGCCAGAGCC 3491
| |||| | ||||| | || || || || | |||||| ||||||||||||
Sbjct 6267 CCTTTAGGTACGACTTTGAGGAGGTACCTTTTCAGTAGATGTACATACACAGCCAGAGCA 6326
Query 3492 TGGATAGGCTGATGAACCCGCTGCTGGACCAGTACCTGTGGGAGCTC 3538
|| ||||||||||||||||| ||||| ||||| ||||| ||||
Sbjct 6327 CTGACCGGCTGATGAACCCGCTGTTGGACTAGTACTTGTGGACGCTC 6373
Score = 199 bits (220), Expect = 1e-47
Identities = 308/435 (71%), Gaps = 10/435 (2%)
Strand=Plus/Plus
Query 4034 TGGCAGGACAGAGACATTTACTACCAAGGGCCCATTTGGGCCAAAATTCCACACACGGAT 4093
|||||| || ||||||| ||| ||| || | || |||||||| |||||||||| ||
Sbjct 6822 TGGCAGAACTGAGACATCTACCTCCAGGGCCTGATCTGGGCCAAGGTTCCACACACTGAC 6881
Query 4094 GGACACTTTCACCCGTCTCCTCTCATTGGCGGATTTGGACTGAA-AAGCCCGCCTCCACA 4152
||||||||| | | |||||||||||| || |||||||| || || |||||| ||||| ||
Sbjct 6882 GGACACTTTTATCTGTCTCCTCTCATGGGGGGATTTGGTCTCAAGAAGCCC-CCTCCTCA 6940
Query 4153 AATATTCATCAAAAACACTCCTGTACCCGCCAATCCCGCAACGACCTTCTCTCCGGCCAG 4212
|| | |||| ||||| || || | ||| | || || | ||| | | ||
Sbjct 6941 GATCCTGGTCAAGAACACCCCGGTTACTGCCGACCCTCCAGTGGAATTCACAAGTGACAA 7000
Query 4213 AATCAACAGCTTCATCACCCAGTACAGCACCGGACAGGTGGCTGTCAAAATAGAATGGGA 4272
|||||||||||||||| || || ||||| ||||| || | || |||| |||||||
Sbjct 7001 GCTCAACAGCTTCATCACTCAATATAGCACTGGACAAGTAACCGTGGAAATTAAATGGGA 7060
Query 4273 AATCCAGAAGGAGCGGTCCAAGAGATGGAACCCAGAGGTCCAGTTCACGTCCAACTACGG 4332
| ||| |||| |||||||| ||||||||||| | || | ||| ||||||| |
Sbjct 7061 GCTGCAGCTGGAGGACTCCAAGAGGTGGAACCCAGAAATTCAATACACTTCCAACTTCAA 7120
Query 4333 AGCACAGGACTCGCTTC-TCTGGGCTCCCGACAACGCCGGAGCCTACAAAGAGCCCAGGG 4391
| |||| | | || || || ||| ||||| | || | |||| ||||| ||||
Sbjct 7121 CGTGCAGG-CAGACATCGACTTTGCCCCCAACAACTCTGGTGTCTACTCAGAGCTGAGGG 7179
Query 4392 CCATTGGATCCCGATACCTCACCAACCACCTCTA------GCCCAATTCTGTTGCATACC 4445
|| ||| |||| | || | | || ||||||| | ||| |||||||||||||
Sbjct 7180 TTATCGGAACCCGCTGGCTTATCCACAACCTCTAACCCCCGGCCATGTCTGTTGCATACC 7239
Query 4446 CTCAATAAACCGTGT 4460
| ||||||||| |||
Sbjct 7240 CACAATAAACCATGT 7254
Score = 152 bits (168), Expect = 2e-33
Identities = 217/304 (71%), Gaps = 1/304 (0%)
Strand=Plus/Plus
Query 2304 AACCCAAGGCC-AATCAACAGAAGCAAGATAACGCTCGAGGTCTTGTGCTTCCTGGGTAC 2362
|| || ||||| || || || ||||||| ||||| ||||| || ||||| || |
Sbjct 5164 AAACCGAGGCCTAACCAGCAACAGCAAGACTCTGCTCGGGGTCTGGTCCTTCCAGGATGT 5223
Query 2363 AAGTATCTTGGTCCTGGGAACGGCCTTGATAAGGGCGATCCTGTCAATTTTGCTGACGAG 2422
|| ||||| ||||| ||||| || ||||| || | | || || || |||
Sbjct 5224 AAATATCTCGGTCCCCTCAACGGTCTCGATAAAGGAGGCGCGGTTAACAGAGCAGACACC 5283
Query 2423 GTTGCCCGAGAGCACGACCTCTCCTACCAGAAACAGCTTGAGGCGGGCGATAACCCTTAC 2482
|||||||||||||||| || ||||| | ||||| ||||| || || || ||||||
Sbjct 5284 ACTGCCCGAGAGCACGACATCAACTACCGCGAGCAGCTGGAGGCAGGAGACAATCCTTAC 5343
Query 2483 CTCAAGTACAACCACGCGGACGCAGAGTTTCAGGAGAAACTCGCTTCTGACACTTCTTTT 2542
||||||| |||| || | ||| ||| |||||| |||| ||| || ||||| | ||||
Sbjct 5344 CTCAAGTCCAACGACACTGACCGAGACTTTCAGAAGAAGCTCTCTGACGACACCTTTTTT 5403
Query 2543 GGGGGAAACCTTGGGAAGGCTGTTTTCCAGGCTAAAAAGAGGATTCTCGAACCTCTTGGC 2602
|||||||||| ||||| || ||| |||| || ||||| | || || ||| ||||
Sbjct 5404 GGGGGAAACCAAAAAAAGGCAGTCTTCTAGGCCAAGAAGAGTCTGCTGGAGCCTTTTGGT 5463
Query 2603 CTGG 2606
||||
Sbjct 5464 CTGG 5467
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 14879433685000
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