Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013- 09-15] 160,500 sequences; 1,926,439,238 total letters Query= NC_006147.2 Length=5132 Score E Sequences producing significant alignments: (Bits) Value seq86691 181 3e-42 >seq86691 Length=5340 Score = 181 bits (200), Expect = 3e-42 Identities = 344/495 (69%), Gaps = 21/495 (4%) Strand=Plus/Plus Query 3085 GGGTGCCGATGGAGTGGGTAATGCCTCAGGAAATTGGCATTGCGATTCCCAATGGCTGGG 3144 ||||||||||| ||||| | |||| |||||||||| |||||||||| ||||| |||| Sbjct 4171 GGGTGCCGATGCCGTGGGGAGCTCCTCGGGAAATTGGCGTTGCGATTCCAAATGGATGGG 4230 Query 3145 AGACACAGTCATTACCAAGACTACAAGAACCTGGGTCCTGCCAAGCTACAACAACCACAT 3204 || || | |||||| | || | |||||||||||||| ||||||||| ||||| Sbjct 4231 CAACCACGTGCTCACCAAGTCCACCGGGACCTGGGTCCTGCCCAGCTACAACCACCACCA 4290 Query 3205 GTACCAAGC-CATCA---CAAGCGGAACAAACCCAGACTCAAATACCCAATATGCTGGA- 3259 |||| |||| |||| || |||| | | |||| ||| || ||| | || | Sbjct 4291 GTAC-AAGCGCATCGACTCACACGGAGCCA--CCAG---CAATGAC--AATTT-CTACAG 4341 Query 3260 -TACAGCACCCCCTGGGGGTACTTTGATTTCAACAGATTCCACTGCCATTTCTCTCCAAG 3318 ||| || || ||||| |||||||| || ||| | ||||| | ||| || || || | Sbjct 4342 CTACTCTACTCCTTGGGGATACTTTGACTTTAACCGCTTCCAGTACCACTTTTCACCCCG 4401 Query 3319 AGACTGGCAGAGACTCATCAACAACCATTGGGGGATTAGACCGAAAGCACTCAAATTCAA 3378 |||||||||| | || |||||||| ||||||| || | || || ||| ||||| Sbjct 4402 AGACTGGCAGGGCTTCGTCAACAACAATTGGGGTATCCGGCCCAAGAGACTTTCCTTCAA 4461 Query 3379 GATATTCAATGTGCAAGTTAAAGAAGTCACGACGCAAGACCAGACAAAGACTATTGCTAA 3438 | | ||||| || || ||||| || ||||| ||||| || | | ||| || | || Sbjct 4462 GCTGTTCAACGTCCAGGTTAAGGAGGTCACTACGCAGGAGGGAGCCACGACCATCACCAA 4521 Query 3439 CAACCTTACCTCTACAATCCAGATATTCACGGATAATGAACACCAGCTGCCCTATGTTCT 3498 ||||| ||| || |||||| | || |||| || |||| | || | || || Sbjct 4522 TAACCTCACCAGCACCATCCAGGTCTTTGCGGACGCGGACTGCCAGTTCCCGCACGTGCT 4581 Query 3499 GGGC-TCGGCCACGGAGGGGACGATGCCACCGTTCCCCTCAGATGTGTATGCCTTGCCCC 3557 ||| || ||| ||||| ||| |||| || ||||| || || | || |||||| Sbjct 4582 AGGCAACGCGCAC-GAGGGAACGCTGCCTCCCTTCCC----GACGTCTTCACCGTGCCCC 4636 Query 3558 AGTACGGCTACTGCA 3572 |||||| | |||||| Sbjct 4637 AGTACGCCGACTGCA 4651 Score = 127 bits (140), Expect = 7e-26 Identities = 172/237 (73%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 1535 AATGCCATATGGCTCTACGGACCTGCGACCACCGGAAAGACCAACATAGCCGAGGCTATT 1594 || ||| | ||||||| ||||||||| |||| |||||||||| | | || | | ||| | Sbjct 2573 AACGCCGTCTGGCTCTTTGGACCTGCGCCCACGGGAAAGACCAGCGTTGCGGTGTCTACT 2632 Query 1595 GCCCATGCTGTACCCTTCTATGGCTGTGTTAACTGGACTAATGAGAACTTCCCATTTAAT 1654 || |||||||| ||||| ||||| | || |||||||| | |||||||| | | | | Sbjct 2633 GCGCATGCTGTGCCCTTTTATGGGCGCGTCAACTGGACCAGCGAGAACTTTCTCTCCA-T 2691 Query 1655 GACTGCGTTGATAAAATGCTTATATGGTGGGAGGAGGGAAAAATGACCAATAAAGTAGTG 1714 || || || || || | | | || |||||||||||||| | ||| | ||||| ||| Sbjct 2692 GATTGTGTGGACAAGACGGTGATTTGGTGGGAGGAGGGCACGATGGCGGCCAAAGTCGTG 2751 Query 1715 GAATCCGCAAAAGCGATACTgggggggTCTGCTGTACGAGTTGATCAAAAGTGTAAG 1771 || || || | || || || ||||| || ||||| |||| || || || || ||| Sbjct 2752 GAGTCGGCCGAGGCCATCCT-GGGGGCTCGGCTGTGTGAGTGGACCAGAAATGCAAG 2807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16281767602500