Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013- 09-15] 160,500 sequences; 1,926,439,238 total letters Query= NC_006148.1 Length=4432 Score E Sequences producing significant alignments: (Bits) Value seq86691 174 4e-40 seq99286 122 2e-24 >seq86691 Length=5340 Score = 174 bits (192), Expect = 4e-40 Identities = 325/475 (68%), Gaps = 17/475 (4%) Strand=Plus/Plus Query 2595 CTGTCATGGCTACAGGAGGAGGCGGTCCGATGGCAGACGATAAC---CAGGGCGCCGAGG 2651 ||||||||||||||||||| ||| ||| || ||| ||| | ||| ||||| | Sbjct 4125 CTGTCATGGCTACAGGAGGCAGCGCTCCAC---CAAGCGACAACATGCCGGGTGCCGATG 4181 Query 2652 GAGTGGGTAATTCCTCAGGTGATTGGCATTGCGATACCAAGTGGATGGGAGACCACGTCA 2711 ||||| | ||||| || |||||| ||||||| |||| |||||||| ||||||| Sbjct 4182 CCGTGGGGAGCTCCTCGGGAAATTGGCGTTGCGATTCCAAATGGATGGGCAACCACGTGC 4241 Query 2712 TTACAAAGTCAACCAGAACTTGGGTGCTCCCCACTTACGGGAATCATCTCTACGGGCCTA 2771 | || ||||| ||| | || ||||| || |||| ||| | || | ||| || | Sbjct 4242 TCACCAAGTCCACCGGGACCTGGGTCCTGCCCAGCTACAACCACCACCAGTACAAGCGCA 4301 Query 2772 TCAACTTTGACGGCACCACAGGTTCGGGTGCTAATG-CAGCCTATGCAGGATACAAGACT 2830 || ||| |||| |||| | |||| || | | ||| ||| ||| Sbjct 4302 TCGACTCACACGGAGCCACCAGC---------AATGACAATTTCTACAGC-TACTCTACT 4351 Query 2831 CCCTGGGGGTACTTTGACTTCAATCGATTCCATTGCCACTTCTCCCCCCGAGACTGGCAA 2890 || ||||| ||||||||||| || || ||||| | |||||| || |||||||||||||| Sbjct 4352 CCTTGGGGATACTTTGACTTTAACCGCTTCCAGTACCACTTTTCACCCCGAGACTGGCAG 4411 Query 2891 AGACTCATCAACAACCACACAGGCATCAGGCCGAAAGGACTCAAAATCAAAGTCTTTAAC 2950 | || |||||||| | || ||| |||| || |||| |||| | || ||| Sbjct 4412 GGCTTCGTCAACAACAATTGGGGTATCCGGCCCAAGAGACTTTCCTTCAAGCTGTTCAAC 4471 Query 2951 GTCCAAGTCAAAGAAGTTACAACACAAGATTCAACGAAAACAATTGCCAACAATCTCACC 3010 ||||| || || || || || || || || | | | || || |||| || |||||| Sbjct 4472 GTCCAGGTTAAGGAGGTCACTACGCAGGAGGGAGCCACGACCATCACCAATAACCTCACC 4531 Query 3011 AGCACCGTACAGATCTTTGCGGACGAGAACTACGACTTACCATATGTATTAGGCA 3065 |||||| | ||| |||||||||||| | ||| | | || || | || |||||| Sbjct 4532 AGCACCATCCAGGTCTTTGCGGACGCGGACTGCCAGTTCCCGCACGTGCTAGGCA 4586 >seq99286 Length=7566 Score = 122 bits (134), Expect = 2e-24 Identities = 295/441 (67%), Gaps = 22/441 (5%) Strand=Plus/Plus Query 2600 ATGGCTACAGGAGGAGGCGGTCCGATGGCAGACGATAACCAGGGCGCCGAGGGAGTGGGT 2659 |||||| ||||| | ||| || ||| ||| | | ||| | |||| |||||||| Sbjct 5647 ATGGCTGCAGGATGTGGCTCACCAGTGGACGACAACATGCAGTGTGCCGCCGGAGTGGGC 5706 Query 2660 AATTCCTCAGGTGATTGGCATTGCGATACCAAGTGGATGGGAGACCACGTCATTACAAAG 2719 | ||| |||||||||||| ||||||||| |||||||||||||| | ||||||||||| Sbjct 5707 TCTGCCTGCGGTGATTGGCATGGCGATACCAGGTGGATGGGAGACCTCATCATTACAAAG 5766 Query 2720 TCAACCAGAACTTGGGTGCTCCCCA-CTTACGGGAATCATCTCTACGGGCCTATCAACTT 2778 || ||| | || |||| || |||| |||| || || ||||| ||| | || Sbjct 5767 TCCACCTGGACCGGGGTCCTGCCCACCTTA--ACAACCACGTCTACAGGCGGACCA---- 5820 Query 2779 TGACGGCACCACAGG-TTCGGGTGCTAATGCAGCCTATGCAGGATACAAGACTCCCTGGG 2837 | | |||| || || | | | || |||| || |||| || || || Sbjct 5821 --CCAGTTCCACCGGCATCAGCAACAACAACA-CCTACTTTGGTTACAGCAC-CCGAGGA 5876 Query 2838 G----GTACTTTGACTTCAATCGATTCCATTGCCACTTCTCCCCCCGAGACTGGCAAAGA 2893 | ||||||||||||||| ||| | |||||| || ||||||||||||| Sbjct 5877 GAGCTGTACTTTGACTTCAA------CCACTTCCACTTTTCATCCCGAGACTGGCAGCAT 5930 Query 2894 CTCATCAACAACCACACAGGCATCAGGCCGAAAGGACTCAAAATCAAAGTCTTTAACGTC 2953 ||| |||| ||| || || || |||| || ||||| |||| | || | | | Sbjct 5931 CTCGTCAATAACAACTGGGGTGTCCGGCCCAAGTGACTCGGTTTCAAGTTATTCACCATA 5990 Query 2954 CAAGTCAAAGAAGTTACAACACAAGATTCAACGAAAACAATTGCCAACAATCTCACCAGC 3013 ||||||| || || || ||| || || || || || ||||| | ||||||||| Sbjct 5991 TAAGTCAAGGAGGTCACGACAGTCGACAGCACAAAGACCATCGCCAATGACCTCACCAGC 6050 Query 3014 ACCGTACAGATCTTTGCGGAC 3034 ||| | ||| | |||| |||| Sbjct 6051 ACCATCCAGGTGTTTGTGGAC 6071 Score = 113 bits (124), Expect = 1e-21 Identities = 199/288 (69%), Gaps = 4/288 (1%) Strand=Plus/Plus Query 3816 GAGACATTTACTTACAGGGGCCTATTTGGGCTAAAATTCCAAATACAGATGGACATTTTC 3875 ||||||| ||| | ||||| | || ||||| || ||||| | || || ||||| ||| Sbjct 6832 GAGACATCTACCTCCAGGGCCTGATCTGGGCCAAGGTTCCACACACTGACGGACACTTTT 6891 Query 3876 ATCCTTCTCCCAGAATGGGTGGTTTTGGATTAAAACATCCTCCGCCTATGATTCTGATCA 3935 ||| ||||| ||||| || ||||| | || | || || ||| ||| ||| ||| Sbjct 6892 ATCTGTCTCCTCTCATGGGGGGATTTGGTCTCAAGAAGCCCCCTCCTCAGATCCTGGTCA 6951 Query 3936 AAAATACACCAGTTCCTGCTGATCCTCCAACTACCTTCAATCCAATGCCA--CAGACTAG 3993 | || || || ||| |||| || |||||| |||| | | || || | | || Sbjct 6952 AGAACACCCCGGTTACTGCCGACCCTCCAGTGGAATTCA--CAAGTGACAAGCTCAACAG 7009 Query 3994 TTTCATTACTGAATACAGTACAGGACAAGTAACTGTTGAAATGTTGTGGGAGGTACAGAA 4053 ||||| ||| |||| || || ||||||||||| || ||||| |||||| | ||| Sbjct 7010 CTTCATCACTCAATATAGCACTGGACAAGTAACCGTGGAAATTAAATGGGAGCTGCAGCT 7069 Query 4054 AGAATCCTCCAAAAGATGGAATCCAGAAGTACAGTTTACTTCCAATTT 4101 || |||||| || ||||| |||||| | || | |||||||| || Sbjct 7070 GGAGGACTCCAAGAGGTGGAACCCAGAAATTCAATACACTTCCAACTT 7117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14045699852500