Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013- 09-15] 160,500 sequences; 1,926,439,238 total letters Query= NC_006152.1 Length=4642 Score E Sequences producing significant alignments: (Bits) Value seq99286 417 2e-113 seq86691 307 3e-80 >seq99286 Length=7566 Score = 417 bits (462), Expect = 2e-113 Identities = 857/1251 (69%), Gaps = 71/1251 (6%) Strand=Plus/Plus Query 2289 CACCGAAACCAAAACCCAATCAGCAGCATCAAGATCAAGCCCGTGGTCTTGTGCTGCCTG 2348 |||| ||||| | || || ||||| || ||||| || || ||||| || || || | Sbjct 5159 CACCCAAACCGAGGCCTAACCAGCAACAGCAAGACTCTGCTCGGGGTCTGGTCCTTCCAG 5218 Query 2349 GTTATAACTATCTCGGACCCGGAAACGGTCTCGATCGAGGAGAGCCTGTCAACAGGGCAG 2408 | | ||| |||||||| ||| |||||||||||| ||||| | || ||||| |||| Sbjct 5219 GATGTAAATATCTCGGTCCCCTCAACGGTCTCGATAAAGGAGGCGCGGTTAACAGAGCAG 5278 Query 2409 ACGAGGTCGCGCGAGAGCACGACATCTCGTACAACGAGCAGCTTGAGGCGGGAGACAACC 2468 || || ||||||||||||||| ||| ||||||||| ||||| |||||||| | Sbjct 5279 ACACCACTGCCCGAGAGCACGACATCAACTACCGCGAGCAGCTGGAGGCAGGAGACAATC 5338 Query 2469 CCTACCTCAAGTACAACCACGCGGACGCCGAGTTTCAGGAGAAGCTCGCCGACGACACAT 2528 | |||||||||| |||| || | ||| || |||||| |||||||| | |||||||| | Sbjct 5339 CTTACCTCAAGTCCAACGACACTGACCGAGACTTTCAGAAGAAGCTCTCTGACGACACCT 5398 Query 2529 CCTTCGGGGGAAACCTCGGAAAGGCAGTCTTTCAGGCCAAGAAAAGGGTTCTCGAACCTT 2588 || |||||||||| |||||||||||| |||||||||| || | || || |||| Sbjct 5399 TTTTTGGGGGAAACCAAAAAAAGGCAGTCTTCTAGGCCAAGAAGAGTCTGCTGGAGCCTT 5458 Query 2589 TTGGCCTGGTTGA---AGAGGGTGCTAAGACGGCCCCTACCGGAA--AGCG-GATAGACG 2642 |||| |||| || |||||| |||| ||| || ||| |||| |||| | ||||| Sbjct 5459 TTGGTCTGGCGGAGCAAGAGGGCGCTAGGACAGCTCCTG--GGAAGAAGCGCGCTAGAC- 5515 Query 2643 ACCACTTTCCAAAAAGAAAGAAGGCTCG--GACCGAAGAGGACTCCAAGCCTT---CCAC 2697 ||| || ||| | || | || | |||| | ||| | || Sbjct 5516 -CCA---TC----------GAACCCCCGCCGCCCAACGAGGCGTTA----CTTGAGCGAC 5557 Query 2698 CTCGTCAGAC-GCC--GAAGC--TGGACCCAGCGGATCC--CAGCAGCTGCAAATCCCAG 2750 | || || | ||| ||| ||| ||| | |||| | | | || | | | ||| Sbjct 5558 CCCG--AGTCCGCCAGGAACTAGTGGGGCCATCCGATCAAGCTGGATCTTTAGA-CTCAG 5614 Query 2751 CC-CAACCAGCCTCAAGTTTGGGAGCTGATACAATGTCTGCGGGAGGTGGCGGCCCATTG 2809 | || || | |||| ||||| | || |||||||| |||| ||| ||||| ||| || Sbjct 5615 CAGCAGCCCCCGTCAA-TTTGGAACCTAATACAATGGCTGCAGGATGTGGCTCACCAGTG 5673 Query 2810 GGCGACAATAACCAAGGTGCCGATGGAGTGGGCAATGCCTCGGGAGATTGGCATTGCGAT 2869 | |||||| | || |||||| ||||||||| ||||| || ||||||||| ||||| Sbjct 5674 GACGACAACATGCAGTGTGCCGCCGGAGTGGGCTCTGCCTGCGGTGATTGGCATGGCGAT 5733 Query 2870 TCCACGTGGATGGGGGACAGAGTCGTCACCAAGTCCACCCGAACCTGGGTGCTGCCCAGC 2929 ||| ||||||||| ||| || | || ||||||||| | ||| |||| ||||||| | Sbjct 5734 ACCAGGTGGATGGGAGACCTCATCATTACAAAGTCCACCTGGACCGGGGTCCTGCCCACC 5793 Query 2930 TACAACAACCACCAGTACCGAGAGATCAAAAGCGGCTCCGTCGACGGAAGCAACGCCAAC 2989 | ||||||||| ||| | || || || | ||| | | |||||| |||| Sbjct 5794 TT-AACAACCACGTCTACAGGCGGACCACCAGTTCCACCGGCATC---AGCAACAACAAC 5849 Query 2990 GCCTACTTTGGATACAGCACCCCCTGGGGG---TACTTTGACTTTAACCGCTTCCACAGC 3046 |||||||||| |||||||||| | | | ||||||||||| |||| ||||||| Sbjct 5850 ACCTACTTTGGTTACAGCACCCGAGGAGAGCTGTACTTTGACTTCAACCACTTCCACTTT 5909 Query 3047 CACTGGAGCCCCCGAGACTGGCAAAGACTCATCAACAACTACTGGGGCTTCAGACCCCGG 3106 | ||||||||||||| ||| |||| ||| ||||||| || | ||| | Sbjct 5910 TCAT------CCCGAGACTGGCAGCATCTCGTCAATAACAACTGGGGTGTCCGGCCCAAG 5963 Query 3107 TCCCTCAGAGTCAAAATCTTCAACATTCAAGTCAAAGAGGTCACGGTGCAG--GACTCCA 3164 | ||| | |||| | |||| ||| ||||||| ||||||||| ||| ||| || Sbjct 5964 TGACTCGGTTTCAAGTTATTCACCATATAAGTCAAGGAGGTCACG--ACAGTCGACAGCA 6021 Query 3165 CCACNNNNATCGCCAACAACCTCACCTCCACCGTCCAAGTGTTTACGGAC-GAC-GACTA 3222 | | |||||||| |||||||| |||| |||| |||||| |||| || |||| Sbjct 6022 CAAAGACCATCGCCAATGACCTCACCAGCACCATCCAGGTGTTTGTGGACACACGGACTG 6081 Query 3223 CCAGCTGCCCTACGTCGTCGGCAACGGGACCGAGGGATGCCTGCCGGCCTTCCCTCCGCA 3282 | ||| || | ||| ||||| | ||| || ||||| || | || || | | Sbjct 6082 TCGGCTCCCGTCCGTGACTGGCAATGCCCACGAAGGGTGCCTACCCCCATTTCCGGCCTA 6141 Query 3283 GGTCTTTACGCTGCCGCAGTACGGTTACGCGACGCTGAACCGCGACAACACAGAAAATCC 3342 ||||||| | |||| || ||||| ||| |||| | |||| | ||| | Sbjct 6142 TGTCTTTATGATGCCTCAATACGGATAC------CTGACTTTCAACAATGGGCACAATGC 6195 Query 3343 CACCGAGAGGAGCAGCTTCTTCTGCCTAGAGTACTTTCCCAGCAAGATGCTGAGAACGGG 3402 | ||||||| || || || || |||| ||||||||| || ||||| ||||| || Sbjct 6196 CGTGCCCAGGAGCACCTACTATTGTCTGGAGTGCTTTCCCAGAAAAATGCTAAGAACAGG 6255 Query 3403 CAACAACTTTGAGTTTACCTACAACTTTGAGGAGGTGCCCTTCCACTCCAGCTTCGCTCC 3462 ||||||||||| |||| ||| ||||||||||||| || || || | | | | | Sbjct 6256 CAACAACTTTGCCTTTAGGTACGACTTTGAGGAGGTACCTTTTCAGTAGATGTACATACA 6315 Query 3463 CAGTCAGAAC-CTGTTCAAGCTGGCCAACCCGCTGGTGGACCAGTACTTGT 3512 ||| |||| | ||| | |||| ||||||||| ||||| ||||||||| Sbjct 6316 CAGCCAGAGCACTG-ACCGGCTGATGAACCCGCTGTTGGACTAGTACTTGT 6365 Score = 136 bits (150), Expect = 1e-28 Identities = 291/427 (68%), Gaps = 21/427 (5%) Strand=Plus/Plus Query 4004 GACGTGTACCTCCAAGGACCCATCTGGGCCAAGATCCCAGAGACGGGGGCGCACTTTCAC 4063 ||| | |||||||| || | |||||||||||| | ||| | || | | |||||| | Sbjct 6834 GACATCTACCTCCAGGGCCTGATCTGGGCCAAGGTTCCACACACTGACGGACACTTTTAT 6893 Query 4064 CCCTCTCCGGCCATGGGCGGATTCGGACTCAAACACCCACCGCCCATGATGCTCATCAAG 4123 | ||||| |||||| ||||| || ||||| | || || || ||| || ||||| Sbjct 6894 CTGTCTCCTCTCATGGGGGGATTTGGTCTCAAGAAGCCCCCTCCTCAGATCCTGGTCAAG 6953 Query 4124 AACACGCCTGTGCCCGGAAATATCACCAGC----TTCTCGGACGTGCCCG--TCAGCAGC 4177 ||||| || || | | | | |||| ||| | | ||| | ||| |||| Sbjct 6954 AACACCCCGGTTACTGCCGACC-CTCCAGTGGAATTCAC--AAGTGACAAGCTCAACAGC 7010 Query 4178 TTCATCACCCAGTACAGCACCGGGCAGGTCACCGTGGAGATGGAGTGGGAGCTCAAGAAG 4237 |||||||| || || ||||| || || || |||||||| || | |||||||| || | Sbjct 7011 TTCATCACTCAATATAGCACTGGACAAGTAACCGTGGAAATTAAATGGGAGCTGCAGCTG 7070 Query 4238 GAAAACTCCAAGAGGTGGAACCCAGAGATCCAGTACACAAACAACTACAACG-ACCCCCA 4296 || |||||||||||||||||||||| || || ||||| ||||| ||||| | || Sbjct 7071 GAGGACTCCAAGAGGTGGAACCCAGAAATTCAATACACTTCCAACTTCAACGTGCAGGCA 7130 Query 4297 GTTTGTGGACTTTGCCCCGGACAGCACCGGGGAATA--CAGAACCACCAGACCTATCGGA 4354 | | ||||||||||| ||| | | || | || |||| | || ||||||| Sbjct 7131 G-ACATCGACTTTGCCCCCAACAACTCTGGTGTCTACTCAGAGC--TGAGGGTTATCGGA 7187 Query 4355 ACCCGATACCTTACCCGACCCCTTTAAC------CCATTCATGTCGCATACCCTCAATAA 4408 ||||| | |||| || ||| |||| |||| ||| |||||||| |||||| Sbjct 7188 ACCCGCTGGCTTATCCACAACCTCTAACCCCCGGCCATGTCTGTTGCATACCCACAATAA 7247 Query 4409 ACCGTGT 4415 ||| ||| Sbjct 7248 ACCATGT 7254 >seq86691 Length=5340 Score = 307 bits (340), Expect = 3e-80 Identities = 523/750 (70%), Gaps = 10/750 (1%) Strand=Plus/Plus Query 1016 TACATGGCGCTCGTCAACTGGCTCGTGGAGCACGGCATCACTTCCGAGAAGCAGTGGATC 1075 ||||||| |||||| |||||||| |||||| |||||| || || |||| ||| |||| Sbjct 2264 TACATGGAGCTCGTTAACTGGCTGGTGGAGATCGGCATTACGTCAGAGA-GCAACGGATT 2322 Query 1076 CAGGAAAATCAGGAGAGCTACCTCTCCTTCAACTCCACCGGCAACTCTCGGAGCCAGATC 1135 ||||| || ||||| || |||| | |||| | || ||| | | || || | | Sbjct 2323 CAGGAGAAGCAGGAATCCTGTATCTCTTACAACGCGACGGGCGATGCCCGCTTGCAAAAC 2382 Query 1136 AAGGCCGCGCTCGACAACGCGACCAAAATTATGAGTCTGACAAAAAGCGCGGTGGACTAC 1195 ||| | || || |||||||| | |||| || | ||||| | | || ||| | Sbjct 2383 AAGTCGGCTCTGGACAACGCCGGCCAAATCGTGGGCCTGACCACCACGGCCTCAGACGGC 2442 Query 1196 CTCGTGGGGAGCTCCGTTCC-CGAGGACATTTCAAAAAACAGAATCTGGCAAATTTTTGA 1254 | || || |||| || | || ||| | || | ||| | || ||| | Sbjct 2443 CGGGTCGGT---TCCGCACCGCCAGAGCATCGAGGACGACCGCATCCGCTGCATCTTTCA 2499 Query 1255 GATGAATGGCTACGACCCGGCCTACGCGGGATCCATCCTCTACGGCTGGTGTCAGCGCTC 1314 | | |||| || |||||||||||| || ||| | | | |||||| | | | Sbjct 2500 CCTCCACGGCTGCGGCCCGGCCTACGCCGGCTCCGTGGTGCTGGCCTGGTGCCGGAGAAA 2559 Query 1315 CTTCAACAAGAGGAACACCGTCTGGCTCTACGGACCCGCCACGACCGGCAAGACCAACAT 1374 | | || ||||| |||||||||||| ||||| || | || || ||||||| | | Sbjct 2560 GTCTGGCCAGCGGAACGCCGTCTGGCTCTTTGGACCTGCGCCCACGGGAAAGACCAGCGT 2619 Query 1375 CGCGGAGGCCATCGCCCACACTGTGCCCTTTTACGGCTGCGTGAACTGGACCAATGAAAA 1434 |||| | | | || || ||||||||||||| || |||| |||||||||| || || Sbjct 2620 TGCGGTGTCTACTGCGCATGCTGTGCCCTTTTATGGGCGCGTCAACTGGACCAGCGAGAA 2679 Query 1435 CTTTCCCTTTAATGACTGTGTGGACAAAATGCTCATTTGGTGGGAGGAGGGAAAGATGAC 1494 ||||| || | ||| ||||||||||| | | | ||||||||||||||||| | |||| | Sbjct 2680 CTTTCTCTCCA-TGATTGTGTGGACAAGACGGTGATTTGGTGGGAGGAGGGCACGATGGC 2738 Query 1495 CAACAAGGTGGTTGAATCCGCCAAGGCCATCCTGGGGGGCTCAAAGGTGCGGGTCGATCA 1554 ||| || || || || ||| ||||||||||||||| ||| ||| | || || || Sbjct 2739 GGCCAAAGTCGTGGAGTCGGCCGAGGCCATCCTGGGGG-CTCGGCTGTGTGAGTGGACCA 2797 Query 1555 GAAATGTAAATCCTCTGTTCAAATTGATTCTACCCCTGTCATTGTAACTTCCAATACAAA 1614 |||||| || |||| || | || | || || ||||| | || ||||| || || Sbjct 2798 GAAATGCAAG-CCTCGCAGCAGACGGAACCCACACCGGTCATCATCACCTCCAACACCAA 2856 Query 1615 CATGTGTGTGGTGGTGGATGGGAATTCCACGACCTTTGAACACCAGCAGCCGCTGGAGGA 1674 ||||| |||| | || || || || | ||||||||||||||| |||||| | ||| Sbjct 2857 CATGTCCGTGGCCATTGACGGAAACTCGAAGACCTTTGAACACCAACAGCCGTTACAGGC 2916 Query 1675 CCGCATGTTCAAATTTGAACTGACTAAGCGGCTCCCGCCAGATTTTGGCAAGATTACTAA 1734 |||||||||||| |||||||||||| |||| | |||||| ||||| || | ||||| Sbjct 2917 CCGCATGTTCAAGTTTGAACTGACTTAGCGTTTGGTGCCAGACTTTGGGAAAGTGACTAA 2976 Query 1735 GCAGGAAGTCAAGGACTTTTTTGCTTGGGC 1764 |||||| ||||| ||| |||||||||||| Sbjct 2977 GCAGGAGGTCAAAGAC--TTTTGCTTGGGC 3004 Score = 284 bits (314), Expect = 4e-73 Identities = 502/729 (69%), Gaps = 23/729 (3%) Strand=Plus/Plus Query 2783 ATGTCTGCGGGAGGTGGCGGCCCATTGGGCGACAATAACCAAGGTGCCGATGGAGTGGGC 2842 ||| || | ||||| ||| ||| ||||||| | | |||||||||| ||||| Sbjct 4130 ATGGCTACAGGAGGCAGCGCTCCACCAAGCGACAACATGCCGGGTGCCGATGCCGTGGGG 4189 Query 2843 AATGCCTCGGGAGATTGGCATTGCGATTCCACGTGGATGGGGGACAGAGTCGTCACCAAG 2902 | |||||||| |||||| ||||||||||| |||||||| || || |||||||| Sbjct 4190 AGCTCCTCGGGAAATTGGCGTTGCGATTCCAAATGGATGGGCAACCACGTGCTCACCAAG 4249 Query 2903 TCCACCCGAACCTGGGTGCTGCCCAGCTACAACAACCACCAGTACCGAGAGATCAAAAGC 2962 |||||| | |||||||| ||||||||||||||| ||||||||||| || || | Sbjct 4250 TCCACCGGGACCTGGGTCCTGCCCAGCTACAACCACCACCAGTACA---AGCGCAT---C 4303 Query 2963 GGCTC---CGTCGACGGAAGCAACGCCAACGCCTACTTTGGATACAGCACCCCCTGGGGG 3019 | ||| || | | ||||| | ||| |||| | ||| || || ||||| Sbjct 4304 GACTCACACGGAGCCACCAGCAATGACAATTTCTACA---GCTACTCTACTCCTTGGGGA 4360 Query 3020 TACTTTGACTTTAACCGCTTCCACAGCCACTGGAGCCCCCGAGACTGGCAAAGACTCATC 3079 ||||||||||||||||||||||| ||||| |||||||||||||| | || || Sbjct 4361 TACTTTGACTTTAACCGCTTCCAGTACCACTTTTCACCCCGAGACTGGCAGGGCTTCGTC 4420 Query 3080 AACAACTACTGGGGCTTCAGACCCCGGTCCCTCAGAGTCAAAATCTTCAACATTCAAGTC 3139 |||||| | ||||| || | ||| | || |||| | |||||| | || || Sbjct 4421 AACAACAATTGGGGTATCCGGCCCAAGAGACTTTCCTTCAAGCTGTTCAACGTCCAGGTT 4480 Query 3140 AAAGAGGTCACGGTGCAGGACTCCACCACNNNNATCGCCAACAACCTCACCTCCACCGTC 3199 || |||||||| |||||| |||| ||| |||| ||||||||| |||| || Sbjct 4481 AAGGAGGTCACTACGCAGGAGGGAGCCACGACCATCACCAATAACCTCACCAGCACCATC 4540 Query 3200 CAAGTGTTTACGGACGACGACTACCAGCTGCCCTACGTCGTCGGCAACGGGACCGAGGGA 3259 || || ||| |||||| |||| |||| | || |||| | ||||||| | ||||||| Sbjct 4541 CAGGTCTTTGCGGACGCGGACTGCCAGTTCCCGCACGTGCTAGGCAACGCGCACGAGGGA 4600 Query 3260 TGCCTGCCGGCCTTCCCTCCGCAGGTCTTTACGCTGCCGCAGTACGGTTACGCGACGCTG 3319 ||||| ||||||| | ||||| || |||| ||||||| ||| ||| Sbjct 4601 ACGCTGCCTCCCTTCCC----GACGTCTTCACCGTGCCCCAGTACG-----CCGA--CTG 4649 Query 3320 AACCGCGACAACACAGAAAATCCCACCGAGAGGAGCAGCTTCTTCTGCCTAGAGTACTTT 3379 | | | ||||| || || |||| | | | |||||||||| |||||| | |||| | Sbjct 4650 CAGCTCAACAACGGGGACAAAGCCACAGCGCGCAGCAGCTTCTGCTGCCTCGGGTACATG 4709 Query 3380 CCCAGCAAGATGCTGAGAACGGGCAACAACTTTGAGTTTACCTACAACTTTGAGGAGGTG 3439 | ||| |||||||| | || |||||||||| | || | ||| | |||||||| || Sbjct 4710 CGGAGCCAGATGCTGCGGACCGGCAACAACTACGCCTTCATGTACCAGTTTGAGGACGTA 4769 Query 3440 CCCTTCCACTCCAGCTTCGCTCCCAGTCAGAACCTGTTCAAGCTGGCCAACCCGCTGGTG 3499 |||| |||| | | | | || |||| |||| | | ||| || ||| | || Sbjct 4770 CCCTCTCACTGGATGTACATGCACATCCAGAGCCTGGACCACCTGATGAAGCCGTTCATG 4829 Query 3500 GACCAGTAC 3508 ||||||||| Sbjct 4830 GACCAGTAC 4838 Score = 149 bits (164), Expect = 2e-32 Identities = 163/216 (75%), Gaps = 3/216 (1%) Strand=Plus/Plus Query 2309 CAGCAGCATCAAGATCAAGCCCGTGGTCTTGTGCTGCCTGGTTATAACTATCTCGGACCC 2368 ||||| || ||||| | || | ||| || || || || ||||| |||||| | ||| Sbjct 3653 CAGCATCACCAAGACTCTTCTCGGGTTCTGGTCCTTCCGGGATATAAATATCTCAGTCCC 3712 Query 2369 GGAAACGGTCTCGATCGAGGAGAGCCTGTCAACAGGGCAGACGAGGTCGCGCGAGAGCAC 2428 |||||||| ||| ||||| | ||||| ||||||||| ||||| | |||||| Sbjct 3713 TTCAACGGTCTGGATAAGGGAGACCTGGTCAATCGGGCAGACGCCGTCGCTCTAGAGCAT 3772 Query 2429 GACATCTCGTACAACGAGCAGCTTGAGGCGGGAGACAACCCCTACCTCAAGTACAACCAC 2488 || || ||| ||||||||| ||||||||| ||||||||| ||||||||||||||| Sbjct 3773 GAAGGCT---ACAGCGAGCAGCTCGAGGCGGGACACAACCCCTCCCTCAAGTACAACCAT 3829 Query 2489 GCGGACGCCGAGTTTCAGGAGAAGCTCGCCGACGAC 2524 || ||| ||||| |||||||||||| | |||||| Sbjct 3830 GCCGACAGAGAGTTCCAGGAGAAGCTCTCTGACGAC 3865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14716520177500