Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013-
09-15] 160,500 sequences; 1,926,439,238 total letters
Query= NC_006152.1
Length=4642
Score E
Sequences producing significant alignments: (Bits) Value
seq99286 417 2e-113
seq86691 307 3e-80
>seq99286
Length=7566
Score = 417 bits (462), Expect = 2e-113
Identities = 857/1251 (69%), Gaps = 71/1251 (6%)
Strand=Plus/Plus
Query 2289 CACCGAAACCAAAACCCAATCAGCAGCATCAAGATCAAGCCCGTGGTCTTGTGCTGCCTG 2348
|||| ||||| | || || ||||| || ||||| || || ||||| || || || |
Sbjct 5159 CACCCAAACCGAGGCCTAACCAGCAACAGCAAGACTCTGCTCGGGGTCTGGTCCTTCCAG 5218
Query 2349 GTTATAACTATCTCGGACCCGGAAACGGTCTCGATCGAGGAGAGCCTGTCAACAGGGCAG 2408
| | ||| |||||||| ||| |||||||||||| ||||| | || ||||| ||||
Sbjct 5219 GATGTAAATATCTCGGTCCCCTCAACGGTCTCGATAAAGGAGGCGCGGTTAACAGAGCAG 5278
Query 2409 ACGAGGTCGCGCGAGAGCACGACATCTCGTACAACGAGCAGCTTGAGGCGGGAGACAACC 2468
|| || ||||||||||||||| ||| ||||||||| ||||| |||||||| |
Sbjct 5279 ACACCACTGCCCGAGAGCACGACATCAACTACCGCGAGCAGCTGGAGGCAGGAGACAATC 5338
Query 2469 CCTACCTCAAGTACAACCACGCGGACGCCGAGTTTCAGGAGAAGCTCGCCGACGACACAT 2528
| |||||||||| |||| || | ||| || |||||| |||||||| | |||||||| |
Sbjct 5339 CTTACCTCAAGTCCAACGACACTGACCGAGACTTTCAGAAGAAGCTCTCTGACGACACCT 5398
Query 2529 CCTTCGGGGGAAACCTCGGAAAGGCAGTCTTTCAGGCCAAGAAAAGGGTTCTCGAACCTT 2588
|| |||||||||| |||||||||||| |||||||||| || | || || ||||
Sbjct 5399 TTTTTGGGGGAAACCAAAAAAAGGCAGTCTTCTAGGCCAAGAAGAGTCTGCTGGAGCCTT 5458
Query 2589 TTGGCCTGGTTGA---AGAGGGTGCTAAGACGGCCCCTACCGGAA--AGCG-GATAGACG 2642
|||| |||| || |||||| |||| ||| || ||| |||| |||| | |||||
Sbjct 5459 TTGGTCTGGCGGAGCAAGAGGGCGCTAGGACAGCTCCTG--GGAAGAAGCGCGCTAGAC- 5515
Query 2643 ACCACTTTCCAAAAAGAAAGAAGGCTCG--GACCGAAGAGGACTCCAAGCCTT---CCAC 2697
||| || ||| | || | || | |||| | ||| | ||
Sbjct 5516 -CCA---TC----------GAACCCCCGCCGCCCAACGAGGCGTTA----CTTGAGCGAC 5557
Query 2698 CTCGTCAGAC-GCC--GAAGC--TGGACCCAGCGGATCC--CAGCAGCTGCAAATCCCAG 2750
| || || | ||| ||| ||| ||| | |||| | | | || | | | |||
Sbjct 5558 CCCG--AGTCCGCCAGGAACTAGTGGGGCCATCCGATCAAGCTGGATCTTTAGA-CTCAG 5614
Query 2751 CC-CAACCAGCCTCAAGTTTGGGAGCTGATACAATGTCTGCGGGAGGTGGCGGCCCATTG 2809
| || || | |||| ||||| | || |||||||| |||| ||| ||||| ||| ||
Sbjct 5615 CAGCAGCCCCCGTCAA-TTTGGAACCTAATACAATGGCTGCAGGATGTGGCTCACCAGTG 5673
Query 2810 GGCGACAATAACCAAGGTGCCGATGGAGTGGGCAATGCCTCGGGAGATTGGCATTGCGAT 2869
| |||||| | || |||||| ||||||||| ||||| || ||||||||| |||||
Sbjct 5674 GACGACAACATGCAGTGTGCCGCCGGAGTGGGCTCTGCCTGCGGTGATTGGCATGGCGAT 5733
Query 2870 TCCACGTGGATGGGGGACAGAGTCGTCACCAAGTCCACCCGAACCTGGGTGCTGCCCAGC 2929
||| ||||||||| ||| || | || ||||||||| | ||| |||| ||||||| |
Sbjct 5734 ACCAGGTGGATGGGAGACCTCATCATTACAAAGTCCACCTGGACCGGGGTCCTGCCCACC 5793
Query 2930 TACAACAACCACCAGTACCGAGAGATCAAAAGCGGCTCCGTCGACGGAAGCAACGCCAAC 2989
| ||||||||| ||| | || || || | ||| | | |||||| ||||
Sbjct 5794 TT-AACAACCACGTCTACAGGCGGACCACCAGTTCCACCGGCATC---AGCAACAACAAC 5849
Query 2990 GCCTACTTTGGATACAGCACCCCCTGGGGG---TACTTTGACTTTAACCGCTTCCACAGC 3046
|||||||||| |||||||||| | | | ||||||||||| |||| |||||||
Sbjct 5850 ACCTACTTTGGTTACAGCACCCGAGGAGAGCTGTACTTTGACTTCAACCACTTCCACTTT 5909
Query 3047 CACTGGAGCCCCCGAGACTGGCAAAGACTCATCAACAACTACTGGGGCTTCAGACCCCGG 3106
| ||||||||||||| ||| |||| ||| ||||||| || | ||| |
Sbjct 5910 TCAT------CCCGAGACTGGCAGCATCTCGTCAATAACAACTGGGGTGTCCGGCCCAAG 5963
Query 3107 TCCCTCAGAGTCAAAATCTTCAACATTCAAGTCAAAGAGGTCACGGTGCAG--GACTCCA 3164
| ||| | |||| | |||| ||| ||||||| ||||||||| ||| ||| ||
Sbjct 5964 TGACTCGGTTTCAAGTTATTCACCATATAAGTCAAGGAGGTCACG--ACAGTCGACAGCA 6021
Query 3165 CCACNNNNATCGCCAACAACCTCACCTCCACCGTCCAAGTGTTTACGGAC-GAC-GACTA 3222
| | |||||||| |||||||| |||| |||| |||||| |||| || ||||
Sbjct 6022 CAAAGACCATCGCCAATGACCTCACCAGCACCATCCAGGTGTTTGTGGACACACGGACTG 6081
Query 3223 CCAGCTGCCCTACGTCGTCGGCAACGGGACCGAGGGATGCCTGCCGGCCTTCCCTCCGCA 3282
| ||| || | ||| ||||| | ||| || ||||| || | || || | |
Sbjct 6082 TCGGCTCCCGTCCGTGACTGGCAATGCCCACGAAGGGTGCCTACCCCCATTTCCGGCCTA 6141
Query 3283 GGTCTTTACGCTGCCGCAGTACGGTTACGCGACGCTGAACCGCGACAACACAGAAAATCC 3342
||||||| | |||| || ||||| ||| |||| | |||| | ||| |
Sbjct 6142 TGTCTTTATGATGCCTCAATACGGATAC------CTGACTTTCAACAATGGGCACAATGC 6195
Query 3343 CACCGAGAGGAGCAGCTTCTTCTGCCTAGAGTACTTTCCCAGCAAGATGCTGAGAACGGG 3402
| ||||||| || || || || |||| ||||||||| || ||||| ||||| ||
Sbjct 6196 CGTGCCCAGGAGCACCTACTATTGTCTGGAGTGCTTTCCCAGAAAAATGCTAAGAACAGG 6255
Query 3403 CAACAACTTTGAGTTTACCTACAACTTTGAGGAGGTGCCCTTCCACTCCAGCTTCGCTCC 3462
||||||||||| |||| ||| ||||||||||||| || || || | | | | |
Sbjct 6256 CAACAACTTTGCCTTTAGGTACGACTTTGAGGAGGTACCTTTTCAGTAGATGTACATACA 6315
Query 3463 CAGTCAGAAC-CTGTTCAAGCTGGCCAACCCGCTGGTGGACCAGTACTTGT 3512
||| |||| | ||| | |||| ||||||||| ||||| |||||||||
Sbjct 6316 CAGCCAGAGCACTG-ACCGGCTGATGAACCCGCTGTTGGACTAGTACTTGT 6365
Score = 136 bits (150), Expect = 1e-28
Identities = 291/427 (68%), Gaps = 21/427 (5%)
Strand=Plus/Plus
Query 4004 GACGTGTACCTCCAAGGACCCATCTGGGCCAAGATCCCAGAGACGGGGGCGCACTTTCAC 4063
||| | |||||||| || | |||||||||||| | ||| | || | | |||||| |
Sbjct 6834 GACATCTACCTCCAGGGCCTGATCTGGGCCAAGGTTCCACACACTGACGGACACTTTTAT 6893
Query 4064 CCCTCTCCGGCCATGGGCGGATTCGGACTCAAACACCCACCGCCCATGATGCTCATCAAG 4123
| ||||| |||||| ||||| || ||||| | || || || ||| || |||||
Sbjct 6894 CTGTCTCCTCTCATGGGGGGATTTGGTCTCAAGAAGCCCCCTCCTCAGATCCTGGTCAAG 6953
Query 4124 AACACGCCTGTGCCCGGAAATATCACCAGC----TTCTCGGACGTGCCCG--TCAGCAGC 4177
||||| || || | | | | |||| ||| | | ||| | ||| ||||
Sbjct 6954 AACACCCCGGTTACTGCCGACC-CTCCAGTGGAATTCAC--AAGTGACAAGCTCAACAGC 7010
Query 4178 TTCATCACCCAGTACAGCACCGGGCAGGTCACCGTGGAGATGGAGTGGGAGCTCAAGAAG 4237
|||||||| || || ||||| || || || |||||||| || | |||||||| || |
Sbjct 7011 TTCATCACTCAATATAGCACTGGACAAGTAACCGTGGAAATTAAATGGGAGCTGCAGCTG 7070
Query 4238 GAAAACTCCAAGAGGTGGAACCCAGAGATCCAGTACACAAACAACTACAACG-ACCCCCA 4296
|| |||||||||||||||||||||| || || ||||| ||||| ||||| | ||
Sbjct 7071 GAGGACTCCAAGAGGTGGAACCCAGAAATTCAATACACTTCCAACTTCAACGTGCAGGCA 7130
Query 4297 GTTTGTGGACTTTGCCCCGGACAGCACCGGGGAATA--CAGAACCACCAGACCTATCGGA 4354
| | ||||||||||| ||| | | || | || |||| | || |||||||
Sbjct 7131 G-ACATCGACTTTGCCCCCAACAACTCTGGTGTCTACTCAGAGC--TGAGGGTTATCGGA 7187
Query 4355 ACCCGATACCTTACCCGACCCCTTTAAC------CCATTCATGTCGCATACCCTCAATAA 4408
||||| | |||| || ||| |||| |||| ||| |||||||| ||||||
Sbjct 7188 ACCCGCTGGCTTATCCACAACCTCTAACCCCCGGCCATGTCTGTTGCATACCCACAATAA 7247
Query 4409 ACCGTGT 4415
||| |||
Sbjct 7248 ACCATGT 7254
>seq86691
Length=5340
Score = 307 bits (340), Expect = 3e-80
Identities = 523/750 (70%), Gaps = 10/750 (1%)
Strand=Plus/Plus
Query 1016 TACATGGCGCTCGTCAACTGGCTCGTGGAGCACGGCATCACTTCCGAGAAGCAGTGGATC 1075
||||||| |||||| |||||||| |||||| |||||| || || |||| ||| ||||
Sbjct 2264 TACATGGAGCTCGTTAACTGGCTGGTGGAGATCGGCATTACGTCAGAGA-GCAACGGATT 2322
Query 1076 CAGGAAAATCAGGAGAGCTACCTCTCCTTCAACTCCACCGGCAACTCTCGGAGCCAGATC 1135
||||| || ||||| || |||| | |||| | || ||| | | || || | |
Sbjct 2323 CAGGAGAAGCAGGAATCCTGTATCTCTTACAACGCGACGGGCGATGCCCGCTTGCAAAAC 2382
Query 1136 AAGGCCGCGCTCGACAACGCGACCAAAATTATGAGTCTGACAAAAAGCGCGGTGGACTAC 1195
||| | || || |||||||| | |||| || | ||||| | | || ||| |
Sbjct 2383 AAGTCGGCTCTGGACAACGCCGGCCAAATCGTGGGCCTGACCACCACGGCCTCAGACGGC 2442
Query 1196 CTCGTGGGGAGCTCCGTTCC-CGAGGACATTTCAAAAAACAGAATCTGGCAAATTTTTGA 1254
| || || |||| || | || ||| | || | ||| | || ||| |
Sbjct 2443 CGGGTCGGT---TCCGCACCGCCAGAGCATCGAGGACGACCGCATCCGCTGCATCTTTCA 2499
Query 1255 GATGAATGGCTACGACCCGGCCTACGCGGGATCCATCCTCTACGGCTGGTGTCAGCGCTC 1314
| | |||| || |||||||||||| || ||| | | | |||||| | | |
Sbjct 2500 CCTCCACGGCTGCGGCCCGGCCTACGCCGGCTCCGTGGTGCTGGCCTGGTGCCGGAGAAA 2559
Query 1315 CTTCAACAAGAGGAACACCGTCTGGCTCTACGGACCCGCCACGACCGGCAAGACCAACAT 1374
| | || ||||| |||||||||||| ||||| || | || || ||||||| | |
Sbjct 2560 GTCTGGCCAGCGGAACGCCGTCTGGCTCTTTGGACCTGCGCCCACGGGAAAGACCAGCGT 2619
Query 1375 CGCGGAGGCCATCGCCCACACTGTGCCCTTTTACGGCTGCGTGAACTGGACCAATGAAAA 1434
|||| | | | || || ||||||||||||| || |||| |||||||||| || ||
Sbjct 2620 TGCGGTGTCTACTGCGCATGCTGTGCCCTTTTATGGGCGCGTCAACTGGACCAGCGAGAA 2679
Query 1435 CTTTCCCTTTAATGACTGTGTGGACAAAATGCTCATTTGGTGGGAGGAGGGAAAGATGAC 1494
||||| || | ||| ||||||||||| | | | ||||||||||||||||| | |||| |
Sbjct 2680 CTTTCTCTCCA-TGATTGTGTGGACAAGACGGTGATTTGGTGGGAGGAGGGCACGATGGC 2738
Query 1495 CAACAAGGTGGTTGAATCCGCCAAGGCCATCCTGGGGGGCTCAAAGGTGCGGGTCGATCA 1554
||| || || || || ||| ||||||||||||||| ||| ||| | || || ||
Sbjct 2739 GGCCAAAGTCGTGGAGTCGGCCGAGGCCATCCTGGGGG-CTCGGCTGTGTGAGTGGACCA 2797
Query 1555 GAAATGTAAATCCTCTGTTCAAATTGATTCTACCCCTGTCATTGTAACTTCCAATACAAA 1614
|||||| || |||| || | || | || || ||||| | || ||||| || ||
Sbjct 2798 GAAATGCAAG-CCTCGCAGCAGACGGAACCCACACCGGTCATCATCACCTCCAACACCAA 2856
Query 1615 CATGTGTGTGGTGGTGGATGGGAATTCCACGACCTTTGAACACCAGCAGCCGCTGGAGGA 1674
||||| |||| | || || || || | ||||||||||||||| |||||| | |||
Sbjct 2857 CATGTCCGTGGCCATTGACGGAAACTCGAAGACCTTTGAACACCAACAGCCGTTACAGGC 2916
Query 1675 CCGCATGTTCAAATTTGAACTGACTAAGCGGCTCCCGCCAGATTTTGGCAAGATTACTAA 1734
|||||||||||| |||||||||||| |||| | |||||| ||||| || | |||||
Sbjct 2917 CCGCATGTTCAAGTTTGAACTGACTTAGCGTTTGGTGCCAGACTTTGGGAAAGTGACTAA 2976
Query 1735 GCAGGAAGTCAAGGACTTTTTTGCTTGGGC 1764
|||||| ||||| ||| ||||||||||||
Sbjct 2977 GCAGGAGGTCAAAGAC--TTTTGCTTGGGC 3004
Score = 284 bits (314), Expect = 4e-73
Identities = 502/729 (69%), Gaps = 23/729 (3%)
Strand=Plus/Plus
Query 2783 ATGTCTGCGGGAGGTGGCGGCCCATTGGGCGACAATAACCAAGGTGCCGATGGAGTGGGC 2842
||| || | ||||| ||| ||| ||||||| | | |||||||||| |||||
Sbjct 4130 ATGGCTACAGGAGGCAGCGCTCCACCAAGCGACAACATGCCGGGTGCCGATGCCGTGGGG 4189
Query 2843 AATGCCTCGGGAGATTGGCATTGCGATTCCACGTGGATGGGGGACAGAGTCGTCACCAAG 2902
| |||||||| |||||| ||||||||||| |||||||| || || ||||||||
Sbjct 4190 AGCTCCTCGGGAAATTGGCGTTGCGATTCCAAATGGATGGGCAACCACGTGCTCACCAAG 4249
Query 2903 TCCACCCGAACCTGGGTGCTGCCCAGCTACAACAACCACCAGTACCGAGAGATCAAAAGC 2962
|||||| | |||||||| ||||||||||||||| ||||||||||| || || |
Sbjct 4250 TCCACCGGGACCTGGGTCCTGCCCAGCTACAACCACCACCAGTACA---AGCGCAT---C 4303
Query 2963 GGCTC---CGTCGACGGAAGCAACGCCAACGCCTACTTTGGATACAGCACCCCCTGGGGG 3019
| ||| || | | ||||| | ||| |||| | ||| || || |||||
Sbjct 4304 GACTCACACGGAGCCACCAGCAATGACAATTTCTACA---GCTACTCTACTCCTTGGGGA 4360
Query 3020 TACTTTGACTTTAACCGCTTCCACAGCCACTGGAGCCCCCGAGACTGGCAAAGACTCATC 3079
||||||||||||||||||||||| ||||| |||||||||||||| | || ||
Sbjct 4361 TACTTTGACTTTAACCGCTTCCAGTACCACTTTTCACCCCGAGACTGGCAGGGCTTCGTC 4420
Query 3080 AACAACTACTGGGGCTTCAGACCCCGGTCCCTCAGAGTCAAAATCTTCAACATTCAAGTC 3139
|||||| | ||||| || | ||| | || |||| | |||||| | || ||
Sbjct 4421 AACAACAATTGGGGTATCCGGCCCAAGAGACTTTCCTTCAAGCTGTTCAACGTCCAGGTT 4480
Query 3140 AAAGAGGTCACGGTGCAGGACTCCACCACNNNNATCGCCAACAACCTCACCTCCACCGTC 3199
|| |||||||| |||||| |||| ||| |||| ||||||||| |||| ||
Sbjct 4481 AAGGAGGTCACTACGCAGGAGGGAGCCACGACCATCACCAATAACCTCACCAGCACCATC 4540
Query 3200 CAAGTGTTTACGGACGACGACTACCAGCTGCCCTACGTCGTCGGCAACGGGACCGAGGGA 3259
|| || ||| |||||| |||| |||| | || |||| | ||||||| | |||||||
Sbjct 4541 CAGGTCTTTGCGGACGCGGACTGCCAGTTCCCGCACGTGCTAGGCAACGCGCACGAGGGA 4600
Query 3260 TGCCTGCCGGCCTTCCCTCCGCAGGTCTTTACGCTGCCGCAGTACGGTTACGCGACGCTG 3319
||||| ||||||| | ||||| || |||| ||||||| ||| |||
Sbjct 4601 ACGCTGCCTCCCTTCCC----GACGTCTTCACCGTGCCCCAGTACG-----CCGA--CTG 4649
Query 3320 AACCGCGACAACACAGAAAATCCCACCGAGAGGAGCAGCTTCTTCTGCCTAGAGTACTTT 3379
| | | ||||| || || |||| | | | |||||||||| |||||| | |||| |
Sbjct 4650 CAGCTCAACAACGGGGACAAAGCCACAGCGCGCAGCAGCTTCTGCTGCCTCGGGTACATG 4709
Query 3380 CCCAGCAAGATGCTGAGAACGGGCAACAACTTTGAGTTTACCTACAACTTTGAGGAGGTG 3439
| ||| |||||||| | || |||||||||| | || | ||| | |||||||| ||
Sbjct 4710 CGGAGCCAGATGCTGCGGACCGGCAACAACTACGCCTTCATGTACCAGTTTGAGGACGTA 4769
Query 3440 CCCTTCCACTCCAGCTTCGCTCCCAGTCAGAACCTGTTCAAGCTGGCCAACCCGCTGGTG 3499
|||| |||| | | | | || |||| |||| | | ||| || ||| | ||
Sbjct 4770 CCCTCTCACTGGATGTACATGCACATCCAGAGCCTGGACCACCTGATGAAGCCGTTCATG 4829
Query 3500 GACCAGTAC 3508
|||||||||
Sbjct 4830 GACCAGTAC 4838
Score = 149 bits (164), Expect = 2e-32
Identities = 163/216 (75%), Gaps = 3/216 (1%)
Strand=Plus/Plus
Query 2309 CAGCAGCATCAAGATCAAGCCCGTGGTCTTGTGCTGCCTGGTTATAACTATCTCGGACCC 2368
||||| || ||||| | || | ||| || || || || ||||| |||||| | |||
Sbjct 3653 CAGCATCACCAAGACTCTTCTCGGGTTCTGGTCCTTCCGGGATATAAATATCTCAGTCCC 3712
Query 2369 GGAAACGGTCTCGATCGAGGAGAGCCTGTCAACAGGGCAGACGAGGTCGCGCGAGAGCAC 2428
|||||||| ||| ||||| | ||||| ||||||||| ||||| | ||||||
Sbjct 3713 TTCAACGGTCTGGATAAGGGAGACCTGGTCAATCGGGCAGACGCCGTCGCTCTAGAGCAT 3772
Query 2429 GACATCTCGTACAACGAGCAGCTTGAGGCGGGAGACAACCCCTACCTCAAGTACAACCAC 2488
|| || ||| ||||||||| ||||||||| ||||||||| |||||||||||||||
Sbjct 3773 GAAGGCT---ACAGCGAGCAGCTCGAGGCGGGACACAACCCCTCCCTCAAGTACAACCAT 3829
Query 2489 GCGGACGCCGAGTTTCAGGAGAAGCTCGCCGACGAC 2524
|| ||| ||||| |||||||||||| | ||||||
Sbjct 3830 GCCGACAGAGAGTTCCAGGAGAAGCTCTCTGACGAC 3865
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 14716520177500
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