Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013- 09-15] 160,500 sequences; 1,926,439,238 total letters Query= NC_006260.1 Length=4721 Score E Sequences producing significant alignments: (Bits) Value seq99286 455 1e-124 seq86691 416 8e-113 >seq99286 Length=7566 Score = 455 bits (504), Expect = 1e-124 Identities = 911/1338 (68%), Gaps = 79/1338 (6%) Strand=Plus/Plus Query 2228 GCCGATGGTTATCTTCCAGATTGGCTCGAGGACAACCTCTCTGAGGGCATTCGCGAGTGG 2287 || ||||||||| |||| |||| | ||||| | ||| ||||| ||| || |||| ||| Sbjct 5096 GCTGATGGTTATTTTCCGGATTAATTGGAGGATACCCTTTCTGAAGGCTTTTGCGACTGG 5155 Query 2288 TGGGACCTGAAACCTGGAGCCCCGAAACCCAAAGCCAACCAGCAAAAGCAGGACAACGGC 2347 | | ||| ||||| ||| || ||||||||| |||| ||| | Sbjct 5156 TAGCACCC-AAACC--GAGGCCT-------------AACCAGCAACAGCAAGACTCTGCT 5199 Query 2348 CGGGGTCTGGTGCTTCCTGGCTACAAGTACCTCGGACCCTTCAACGGACTCGACAAGGGG 2407 ||||||||||| ||||| || | || || ||||| ||| ||||||| ||||| || || Sbjct 5200 CGGGGTCTGGTCCTTCCAGGATGTAAATATCTCGGTCCCCTCAACGGTCTCGATAAAGGA 5259 Query 2408 GAGCCCGTCAACGCGGCGGACGCAGCGGCCCTCGAGCACGACAAGGCCTACGACCAGCAG 2467 | | || ||| || ||| | | |||| |||||||||| |||| | ||||| Sbjct 5260 GGCGCGGTTAACAGAGCAGACACCACTGCCCGAGAGCACGACATCAACTACCGCGAGCAG 5319 Query 2468 CTCAAAGCGGGTGACAATCCGTACCTGCGGTATAACCACGCCGACGCCGAGTTTCAGGAG 2527 || | || || |||||||| ||||| || ||| || | ||| || |||||| || Sbjct 5320 CTGGAGGCAGGAGACAATCCTTACCTCAAGTCCAACGACACTGACCGAGACTTTCAGAAG 5379 Query 2528 CGTCTGCAAGAAGATACGTCATTTGGGGGCAACCTCGGGCGAGCAGTCTTCCAGGCCAAG 2587 || || || || | |||||||| |||| ||||||||| |||||||| Sbjct 5380 AAGCTCTCTGACGACACCTTTTTTGGGGGAAACCAAAAAAAGGCAGTCTTCTAGGCCAAG 5439 Query 2588 AAGCGGGTTCTCGAACCTCTCGGTCTGGTTGAGGAAG---GCGCTAAGACGGCTCCTGCA 2644 ||| | | || || ||| | ||||||| ||| ||| |||||| ||| ||||||| Sbjct 5440 AAGAGTCTGCTGGAGCCTTTTGGTCTGGCGGAGCAAGAGGGCGCTAGGACAGCTCCTGGG 5499 Query 2645 AAGAAGAGACCGGTAGAGCCGTCACCTCAGCGTTCCCCCGACTCCTCCACG-GGCATCGG 2703 |||||| | || |||| || || | |||||| | || | ||| ||| | Sbjct 5500 AAGAAGCG--CGCTAGACCCATC--------GAACCCCCGCCGCC-CAACGAGGCGTTA- 5547 Query 2704 CAAGAAAGGCCAGCAGCCCGCCAGAAAGAGACTCAATTTCGGTCAGACTGGCGACTCAGA 2763 | || | || || ||||||| || | | | || || | || ||| Sbjct 5548 CTTGAGCGACCCCGAGTCCGCCAGGAA------CTAGTGGGGCCATCC----GA-TCA-- 5594 Query 2764 GTCAGTCCCCGACCCTCAACCTCTCGGAGAACCTCCAGCAGCGCCCTCTAGTGTGGGATC 2823 || || | || | ||| | ||||||| ||| | | ||| | | Sbjct 5595 ---AG---------CTGGATCTTT---AGACTCAGCAGCAGCCCCCGTCAATTTGGAACC 5639 Query 2824 TGGTACAGTGGCTGCAGGCGGTGGCGCACCAATGGCAGACAATAACGAAGGTGCCGACGG 2883 | |||| |||||||||| ||||| ||||| ||| ||||| | | |||||| ||| Sbjct 5640 TAATACAATGGCTGCAGGATGTGGCTCACCAGTGGACGACAACATGCAGTGTGCCGCCGG 5699 Query 2884 AGTGGGTAATGCCTCAGGAAATTGGCATTGCGATTCCACATGGCTGGGCGACAGAGTCAT 2943 |||||| ||||| || |||||||| ||||| ||| ||| |||| ||| |||| Sbjct 5700 AGTGGGCTCTGCCTGCGGTGATTGGCATGGCGATACCAGGTGGATGGGAGACCTCATCAT 5759 Query 2944 TACCACCAGCACCCGAACCTGGGCCCTGCCCACCTACAACAACCACCTCTACAAGCAAAT 3003 ||| | |||| | ||| ||| ||||||||||| ||||||||| |||||| || | Sbjct 5760 TACAAAGTCCACCTGGACCGGGGTCCTGCCCACCTT-AACAACCACGTCTACAGGCGGAC 5818 Query 3004 CTCCAGTGAAACTGCAGGTAGTACCAACGACAACACCTACTTCGGCTACAGCACCCCCTG 3063 | ||||| || | | | | |||| ||||||||||||| || |||||||||| | Sbjct 5819 CACCAGTTCCACCG---GCATCAGCAACAACAACACCTACTTTGGTTACAGCACCCGAGG 5875 Query 3064 GGGG---TATTTTGACTTTAACAGATTCCACTGCCACTTCTCACCACGTGACTGGCAGCG 3120 | | || |||||||| ||| |||| |||||| ||| | || |||||||||| Sbjct 5876 AGAGCTGTACTTTGACTTCAAC------CACTTCCACTTTTCATCCCGAGACTGGCAGCA 5929 Query 3121 ACTCATCAACAACAACTGGGGATTCCGGCCCAAGAAGCTGCGGTTCAAGCTCTTCAACAT 3180 ||| |||| ||||||||||| ||||||||||| || | |||||| | |||| ||| Sbjct 5930 TCTCGTCAATAACAACTGGGGTGTCCGGCCCAAGTGACTCGGTTTCAAGTTATTCACCAT 5989 Query 3181 CCAGGTCAAGGAGGTCACGACGAATGACGGCGTTACGACCATCGCTAATAACCTTACCAG 3240 | ||||||||||||||||| ||| || | ||||||||| ||| |||| ||||| Sbjct 5990 ATAAGTCAAGGAGGTCACGACAGTCGACAGCACAAAGACCATCGCCAATGACCTCACCAG 6049 Query 3241 CACGATTCAGGTATTCTCGG--ACTCGGAATACCAGCTGCCGTACGTCCTCGGCTCTGCG 3298 ||| || ||||| || || || |||| | | ||| |||| ||| ||| ||| Sbjct 6050 CACCATCCAGGTGTTTGTGGACACACGGACTGTCGGCTCCCGTCCGTGACTGGCAATGCC 6109 Query 3299 CACCAGGGCTGCCTGCCTCCGTTCCCGGCGGACGTCTTCATGATTCCTCAGTACGGCTAC 3358 ||| | || ||||| || || || ||||| | ||||| ||||| ||||| ||||| ||| Sbjct 6110 CACGAAGGGTGCCTACCCCCATTTCCGGCCTATGTCTTTATGATGCCTCAATACGGATAC 6169 Query 3359 CTGACTCTCAACAAT-GGCAGTCAGT-CTGTGGGACGTTCCTCCTTCTACTGCCTGGAGT 3416 |||||| |||||||| |||| || | | ||| | | ||| ||| || ||||||| Sbjct 6170 CTGACTTTCAACAATGGGCA--CAATGCCGTGCCCAGGAGCACCTACTATTGTCTGGAGT 6227 Query 3417 ACTTCCCCTCTCAGATGCTGAGAACGGGCAACAACTTTGAGTTCAGCTACAGCTTCGAGG 3476 ||| ||| | ||||| ||||| ||||||||||||| || || ||| ||| |||| Sbjct 6228 GCTTTCCCAGAAAAATGCTAAGAACAGGCAACAACTTTGCCTTTAGGTACGACTTTGAGG 6287 Query 3477 ACGTGCCTTTCCACAGCAGCTACGCACACAGCCAGAGCCTGGACCGGCTGATGAATCCCC 3536 | || ||||| || | ||| ||||||||||||| |||||||||||||| || | Sbjct 6288 AGGTACCTTTTCAGTAGATGTACATACACAGCCAGAGCACTGACCGGCTGATGAACCCGC 6347 Query 3537 TCATCGACCAGTACTTGT 3554 | | ||| ||||||||| Sbjct 6348 TGTTGGACTAGTACTTGT 6365 Score = 221 bits (244), Expect = 4e-54 Identities = 275/376 (73%), Gaps = 2/376 (1%) Strand=Plus/Plus Query 4019 CAGGGAGCCTTACCTGGCATGGTCTGGCAGAACCGGGACGTGTACCTGCAGGGTCCCATC 4078 ||||| || | ||||||||| ||||||||| | ||| | ||||| ||||| | ||| Sbjct 6800 CAGGGTGC--TGCCTGGCATGAATTGGCAGAACTGAGACATCTACCTCCAGGGCCTGATC 6857 Query 4079 TGGGCCAAGATTCCTCACACGGATGGCAACTTTCACCCGTCTCCTTTGATGGGCGGCTTT 4138 ||||||||| |||| ||||| || || ||||| | | ||||||| | ||||| || ||| Sbjct 6858 TGGGCCAAGGTTCCACACACTGACGGACACTTTTATCTGTCTCCTCTCATGGGGGGATTT 6917 Query 4139 GGACTTAAACATCCGCCTCCTCAGATCCTGATCAAGAACACTCCCGTTCCCGCTAATCCT 4198 || || || | || ||||||||||||||| |||||||||| || ||| | || | ||| Sbjct 6918 GGTCTCAAGAAGCCCCCTCCTCAGATCCTGGTCAAGAACACCCCGGTTACTGCCGACCCT 6977 Query 4199 CCGGAGGTGTTTACTCCTGCCAAGTTTGCTTCGTTCATCACACAGTACAGCACCGGACAA 4258 || | || || || || |||| | |||||||| || || ||||| |||||| Sbjct 6978 CCAGTGGAATTCACAAGTGACAAGCTCAACAGCTTCATCACTCAATATAGCACTGGACAA 7037 Query 4259 GTCAGCGTGGAAATCGAGTGGGAGCTGCAGAAGGAAAACAGCAAGCGCTGGAACCCGGAG 4318 || | ||||||||| | |||||||||||| ||| || |||| | |||||||| || Sbjct 7038 GTAACCGTGGAAATTAAATGGGAGCTGCAGCTGGAGGACTCCAAGAGGTGGAACCCAGAA 7097 Query 4319 ATTCAGTACACCTCCAACTTTGAAAAGCAGACTGGTGTGGACTTTGCCGTTGACAGCCAG 4378 ||||| ||||| |||||||| | |||| | | | ||||||||| ||| | Sbjct 7098 ATTCAATACACTTCCAACTTCAACGTGCAGGCAGACATCGACTTTGCCCCCAACAACTCT 7157 Query 4379 GGTGTTTACTCTGAGC 4394 ||||| ||||| |||| Sbjct 7158 GGTGTCTACTCAGAGC 7173 >seq86691 Length=5340 Score = 416 bits (460), Expect = 8e-113 Identities = 538/737 (73%), Gaps = 6/737 (1%) Strand=Plus/Plus Query 1003 TACATGGAGCTGGTCGGGTGGCTGGTGGACCGGGGCATCACCTCCGAGAAGCAGTGGATC 1062 ||||||||||| || ||||||||||| ||||| || || |||| ||| |||| Sbjct 2264 TACATGGAGCTCGTTAACTGGCTGGTGGAGATCGGCATTACGTCAGAGA-GCAACGGATT 2322 Query 1063 CAGGAGGACCAGGCCTCGTACATCTCCTTCAACGCCGCCTCCAACTCGCGGTCCCAGATC 1122 |||||| | |||| || | ||||| | |||||| | | | | || | || | | Sbjct 2323 CAGGAGAAGCAGGAATCCTGTATCTCTTACAACGCGACGGGCGATGCCCGCTTGCAAAAC 2382 Query 1123 AAGGCCGCGCTGGACAATGCCGGCAAGATCATGGCGCTGACCAAATCCGCGCCCGACTAC 1182 ||| | || |||||||| |||||| | ||| ||| ||||||| | || | ||| | Sbjct 2383 AAGTCGGCTCTGGACAACGCCGGCCAAATCGTGGGCCTGACCACCACGGCCTCAGACGGC 2442 Query 1183 CTGGTGGGGCCCTCGCTGCCCGCGGACATTAAAACCAACCGCATCTACCGCATCCTGGAG 1242 | ||| || || | | ||| | | ||| | | |||||||| | ||||| | | Sbjct 2443 CGGGTCGGTTCCGCACCGCCAGAG--CATCGAGGACGACCGCATCCGCTGCATCTTTCAC 2500 Query 1243 CTGAACGGGTACGATCCTGCCTACGCCGGCTCCGTCTTTCTCGGCTGGGCCCAGAAAAAG 1302 || |||| | || || ||||||||||||||||| | || | |||| || || |||| Sbjct 2501 CTCCACGGCTGCGGCCCGGCCTACGCCGGCTCCGTGGTGCTGGCCTGGTGCCGGAGAAAG 2560 Query 1303 TTCGGGAAGCGCAACACCATCTGGCTGTTTGGGCCCGCCACCACCGGCAAGACCAACATT 1362 | || |||| ||| || ||||||| ||||| || || |||| || ||||||| | || Sbjct 2561 TCTGGCCAGCGGAACGCCGTCTGGCTCTTTGGACCTGCGCCCACGGGAAAGACCAGCGTT 2620 Query 1363 GCGGAAGCCATCGCCCACGCCGTGCCCTTCTACGGCTGCGTCAACTGGACCAATGAGAAC 1422 |||| | | || || || |||||||| || || ||||||||||||||| |||||| Sbjct 2621 GCGGTGTCTACTGCGCATGCTGTGCCCTTTTATGGGCGCGTCAACTGGACCAGCGAGAAC 2680 Query 1423 TTTCCCTTCAACGATTGCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGCAAGATGACG 1482 |||| || || ||||| || ||||||| |||||| |||||||||||||||| |||| || Sbjct 2681 TTTCTCTCCAT-GATTGTGTGGACAAGACGGTGATTTGGTGGGAGGAGGGCACGATGGCG 2739 Query 1483 GCCAAGGTCGTGGAGTCCGCCAAGGCCATTCTCGGCGGCAGCAAGGTGCGCGTGGACCAA 1542 ||||| ||||||||||| ||| ||||||| || || ||| ||| | |||||||| Sbjct 2740 GCCAAAGTCGTGGAGTCGGCCGAGGCCATCCTGGG-GGCTCGGCTGTGTGAGTGGACCAG 2798 Query 1543 AAGTGCAAGTCGTCCGCCCAGATCGACCCCACCCCCGTGATCGTCACCTCCAACACCAAC 1602 || |||||| | || |||| || ||||| || || ||| ||||||||||||||||| Sbjct 2799 AAATGCAAGCC-TCGCAGCAGACGGAACCCACACCGGTCATCATCACCTCCAACACCAAC 2857 Query 1603 ATGTGCGCCGTGATTGACGGGAACAGCACCACCTTCGAGCACCAGCAGCCGTTGCAGGAC 1662 |||| || | |||||||| ||| | ||||| || ||||| |||||||| |||| | Sbjct 2858 ATGTCCGTGGCCATTGACGGAAACTCGAAGACCTTTGAACACCAACAGCCGTTACAGGCC 2917 Query 1663 CGGATGTTCAAATTTGAACTCACCCGCCGTCTGGAGCACGACTTTGGCAAGGTGACGAAG 1722 || |||||||| |||||||| || ||| ||| || |||||||| || ||||| ||| Sbjct 2918 CGCATGTTCAAGTTTGAACTGACTTAGCGTTTGGTGCCAGACTTTGGGAAAGTGACTAAG 2977 Query 1723 CAGGAAGTCAAAGAGTT 1739 ||||| |||||||| || Sbjct 2978 CAGGAGGTCAAAGACTT 2994 Score = 361 bits (400), Expect = 2e-96 Identities = 492/679 (72%), Gaps = 13/679 (2%) Strand=Plus/Plus Query 2873 GGTGCCGACGGAGTGGGTAATGCCTCAGGAAATTGGCATTGCGATTCCACATGGCTGGGC 2932 |||||||| | ||||| | |||| |||||||||| ||||||||||| |||| ||||| Sbjct 4172 GGTGCCGATGCCGTGGGGAGCTCCTCGGGAAATTGGCGTTGCGATTCCAAATGGATGGGC 4231 Query 2933 GACAGAGTCATTACCACCAGCACCCGAACCTGGGCCCTGCCCACCTACAACAACCACCTC 2992 || || | |||| |||| | ||||||| |||||||| ||||||| |||||| Sbjct 4232 AACCACGTGCTCACCAAGTCCACCGGGACCTGGGTCCTGCCCAGCTACAACCACCACCAG 4291 Query 2993 TACAAGCAAATCTCCAGTGAAACTGCAGGTAGTACCAACGACAACACCTACTTCGGCTAC 3052 ||||||| ||| | | | || | || | | ||| ||||| |||| ||||| Sbjct 4292 TACAAGCGCATCGAC--TCACACGG-AGCCACCAGCAATGACAATTTCTACA---GCTAC 4345 Query 3053 AGCACCCCCTGGGGGTATTTTGACTTTAACAGATTCCACTGCCACTTCTCACCACGTGAC 3112 || || ||||| || |||||||||||| | ||||| | |||||| ||||| || ||| Sbjct 4346 TCTACTCCTTGGGGATACTTTGACTTTAACCGCTTCCAGTACCACTTTTCACCCCGAGAC 4405 Query 3113 TGGCAGCGACTCATCAACAACAACTGGGGATTCCGGCCCAAGAAGCTGCGGTTCAAGCTC 3172 |||||| | || |||||||||| ||||| |||||||||||| || |||||||| Sbjct 4406 TGGCAGGGCTTCGTCAACAACAATTGGGGTATCCGGCCCAAGAGACTTTCCTTCAAGCTG 4465 Query 3173 TTCAACATCCAGGTCAAGGAGGTCACGACGAATGACGGCGTTACGACCATCGCTAATAAC 3232 |||||| ||||||| ||||||||||| ||| | || || | ||||||||| | |||||| Sbjct 4466 TTCAACGTCCAGGTTAAGGAGGTCACTACGCAGGAGGGAGCCACGACCATCACCAATAAC 4525 Query 3233 CTTACCAGCACGATTCAGGTATTCTCGGACTCGGAATACCAGCTGCCGTACGTCCTCGGC 3292 || |||||||| || ||||| || ||||| |||| | |||| | ||| |||| || ||| Sbjct 4526 CTCACCAGCACCATCCAGGTCTTTGCGGACGCGGACTGCCAGTTCCCGCACGTGCTAGGC 4585 Query 3293 TCTGCGCACCAGGGCTGCCTGCCTCCGTTCCCGGCGGACGTCTTCATGATTCCTCAGTAC 3352 |||||| |||| |||||||| ||||| |||||||||| | || |||||| Sbjct 4586 AACGCGCACGAGGGAACGCTGCCTCCCTTCCC----GACGTCTTCACCGTGCCCCAGTAC 4641 Query 3353 GGCTACCTGACTCTCAACAA-TGGCAGTCAGTCTGTGGGACGTTCCTCCTTCTACTGCCT 3411 | | | ||| |||||||| || | || | | | || | ||||| |||||| Sbjct 4642 GCCGA-CTGCAGCTCAACAACGGGGACAAAGCCACAGCG-CGCAGCAGCTTCTGCTGCCT 4699 Query 3412 GGAGTACTTCCCCTCTCAGATGCTGAGAACGGGCAACAACTTTGAGTTCAGCTACAGCTT 3471 | |||| | | ||||||||| | || |||||||||| | |||| ||| || Sbjct 4700 CGGGTACATGCGGAGCCAGATGCTGCGGACCGGCAACAACTACGCCTTCATGTACCAGTT 4759 Query 3472 CGAGGACGTGCCTTTCCACAGCAGCTACGCACACAGCCAGAGCCTGGACCGGCTGATGAA 3531 |||||||| || | ||| | | ||| |||| |||||||||||||| |||||||| Sbjct 4760 TGAGGACGTACCCTCTCACTGGATGTACATGCACATCCAGAGCCTGGACCACCTGATGAA 4819 Query 3532 TCCCCTCATCGACCAGTAC 3550 || |||| ||||||||| Sbjct 4820 GCCGTTCATGGACCAGTAC 4838 Score = 150 bits (166), Expect = 5e-33 Identities = 296/434 (68%), Gaps = 14/434 (3%) Strand=Plus/Plus Query 2101 AAACTCTGCGCGATTCATCATCTGCTGGGGCGGGCGCCCGAGATTGCTTGCTCGGCCTGC 2160 || || ||||| |||||||| | ||||| | |||||| ||| || || ||||| Sbjct 3424 AAGCTGTGCGCAGTTCATCATATTCTGGGCCCGGCGCCAGAGGGCCAGTGTTCTGCCTGT 3483 Query 2161 GACCTGGTCAACGTGGACC-------TGGACGACTGCGTTTCTGAGCAATAAATGACTTA 2213 | || | ||| || ||| | || ||||| | || |||| | ||||| | Sbjct 3484 AATCTCGCCAATGTTGACAATGTTGATCGATAACTGCAATAAAGAACAATGATTGACTCA 3543 Query 2214 AACCAGGTATGGCTGCCGATGGTTATCTTCCAGATTGGCTCGAGGACAACCTCTCTGAGG 2273 ||| || |||||||| |||||||| ||||||| ||| | ||||||| ||||||||| Sbjct 3544 AAC-AGATATGGCTG---ATGGTTATTTTCCAGACTGGTTGGAGGACACTTTCTCTGAGG 3599 Query 2274 GCATTCGCGAGTGGTGGGACCTGAAACCTGGAGCCCCGAAACCCAAAGCCAACCAGCAAA 2333 | ||| ||||| | || ||||||| || ||||| | ||||||| Sbjct 3600 GTCGGCGCCAGTGGAATAAATGCAAGGCTGGAGCGCCCAAACCGCGGCCTCACCAGCATC 3659 Query 2334 AGCAGGACAACGGCCGGGGTCTGGTGCTTCCTGGCTACAAGTACCTCGGACCCTTCAACG 2393 | || ||| |||| |||||| ||||| || || || || ||| | |||||||||| Sbjct 3660 ACCAAGACTCTTCTCGGGTTCTGGTCCTTCCGGGATATAAATATCTCAGTCCCTTCAACG 3719 Query 2394 GACTCGACAAGGGGGAGCCCGTCAACGCGGCGGACGCAGCGGCCCTCGAGCACGACAAGG 2453 | || || ||||| || | ||||| ||| ||||| | || || ||||| | |||| Sbjct 3720 GTCTGGATAAGGGAGACCTGGTCAATCGGGCAGACGCCGTCGCTCTAGAGCATG--AAGG 3777 Query 2454 CCTACGACCAGCAGCTCAAAGCGGGTGACAATCCGTACCTGCGGTATAACCACGCCGACG 2513 |||| | |||||||| | ||||| |||| || | ||| ||| ||||| |||||| Sbjct 3778 -CTACAGCGAGCAGCTCGAGGCGGGACACAACCCCTCCCTCAAGTACAACCATGCCGACA 3836 Query 2514 CCGAGTTTCAGGAG 2527 ||||| |||||| Sbjct 3837 GAGAGTTCCAGGAG 3850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14968876395000