Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013- 09-15] 160,500 sequences; 1,926,439,238 total letters Query= NC_006261.1 Length=4393 Score E Sequences producing significant alignments: (Bits) Value seq99286 482 6e-133 seq86691 408 1e-110 >seq99286 Length=7566 Score = 482 bits (534), Expect = 6e-133 Identities = 917/1340 (68%), Gaps = 80/1340 (6%) Strand=Plus/Plus Query 2127 GCCGATGGTTATCTTCCAGATTGGCTCGAGGACAACCTCTCTGAGGGCATTCGCGAGTGG 2186 || ||||||||| |||| |||| | ||||| | ||| ||||| ||| || |||| ||| Sbjct 5096 GCTGATGGTTATTTTCCGGATTAATTGGAGGATACCCTTTCTGAAGGCTTTTGCGACTGG 5155 Query 2187 TGGGCGCTGAAACCTGGAGCCCCGAAGCCCAAAGCCAACCAGCAAAAGCAGGACGACGGC 2246 | | | | ||||| || ||| || ||||||| |||| ||| | Sbjct 5156 TAG-CACCCAAACC---------GAGGCCTAA------CCAGCAACAGCAAGACTCTGCT 5199 Query 2247 CGGGGTCTGGTGCTTCCTGGCTACAAGTACCTCGGACCCTTCAACGGACTCGACAAGGGG 2306 ||||||||||| ||||| || | || || ||||| ||| ||||||| ||||| || || Sbjct 5200 CGGGGTCTGGTCCTTCCAGGATGTAAATATCTCGGTCCCCTCAACGGTCTCGATAAAGGA 5259 Query 2307 GAGCCCGTCAACGCGGCGGACGCAGCGGCCCTCGAGCACGACAAGGCCTACGACCAGCAG 2366 | | || ||| || ||| | | |||| |||||||||| |||| | ||||| Sbjct 5260 GGCGCGGTTAACAGAGCAGACACCACTGCCCGAGAGCACGACATCAACTACCGCGAGCAG 5319 Query 2367 CTGCAGGCGGGTGACAATCCGTACCTGCGGTATAACCACGCCGACGCCGAGTTTCAGGAG 2426 ||| |||| || |||||||| ||||| || ||| || | ||| || |||||| || Sbjct 5320 CTGGAGGCAGGAGACAATCCTTACCTCAAGTCCAACGACACTGACCGAGACTTTCAGAAG 5379 Query 2427 CGTCTGCAAGAAGATACGTCTTTTGGGGGCAACCTCGGGCGAGCAGTCTTCCAGGCCAAG 2486 || || || || | ||||||||| |||| ||||||||| |||||||| Sbjct 5380 AAGCTCTCTGACGACACCTTTTTTGGGGGAAACCAAAAAAAGGCAGTCTTCTAGGCCAAG 5439 Query 2487 AAGCGGGTTCTCGAACCTCTCGGTCTGGTTGAGGAAG---GCGCTAAGACGGCTCCTGGA 2543 ||| | | || || ||| | ||||||| ||| ||| |||||| ||| |||||||| Sbjct 5440 AAGAGTCTGCTGGAGCCTTTTGGTCTGGCGGAGCAAGAGGGCGCTAGGACAGCTCCTGGG 5499 Query 2544 AAGAAGAGACCGGTAGAGCCATCACCCCAGCGTTCTCCAGACTCCTCTACG-GGCATCGG 2602 |||||| | || |||| |||| || | || | | || | ||| ||| | Sbjct 5500 AAGAAGCG--CGCTAGACCCAT--------CGAACCCCCGCCGCC-CAACGAGGCGTTA- 5547 Query 2603 CAAGAAAGGCCAACAGCCCGCCAGAAAAAGACTCAATTTTGGTCAGACTGGCGACTCAGA 2662 | || | || || ||||||| || | ||| ||| | Sbjct 5548 CTTGAGCGACCCCGAGTCCGCCAGGAAC--------TAGTGG-------GGCCA------ 5586 Query 2663 GTCAGTTCCAGACCCTCAACCTCTCGGAGAACCTCCAGCAGCGCCCTCTGGTGTGGGACC 2722 || | || || || | || | ||| | ||||||| ||| | ||| ||| Sbjct 5587 -TCCGATCAAG---CTGGATCTTT---AGACTCAGCAGCAGCCCCCGTCAATTTGGAACC 5639 Query 2723 TAATACAATGGCTGCAGGCGGTGGCGCACCAATGGCAGACAATAACGAAGGCGCCGACGG 2782 |||||||||||||||||| ||||| ||||| ||| ||||| | | | |||| ||| Sbjct 5640 TAATACAATGGCTGCAGGATGTGGCTCACCAGTGGACGACAACATGCAGTGTGCCGCCGG 5699 Query 2783 AGTGGGTAGTTCCTCGGGAAATTGGCATTGCGATTCCACATGGCTGGGCGACAGAGTCAT 2842 |||||| | ||| || |||||||| ||||| ||| ||| |||| ||| |||| Sbjct 5700 AGTGGGCTCTGCCTGCGGTGATTGGCATGGCGATACCAGGTGGATGGGAGACCTCATCAT 5759 Query 2843 CACCACCAGCACCCGAACCTGGGCCCTGCCCACCTACAACAACCACCTCTACAAGCAAAT 2902 || | |||| | ||| ||| ||||||||||| ||||||||| |||||| || | Sbjct 5760 TACAAAGTCCACCTGGACCGGGGTCCTGCCCACCTT-AACAACCACGTCTACAGGCGGAC 5818 Query 2903 CTCCAACGGGACATCGGGAGGAGCCACCAACGACAACACCTACTTCGGCTACAGCACCCC 2962 | ||| | || ||| | ||| ||| ||||||||||||| || |||||||||| Sbjct 5819 CACCA--GTTCCACCGGCATCAGC----AACAACAACACCTACTTTGGTTACAGCACCCG 5872 Query 2963 CTGGGGG---TATTTTGACTTTAACAGATTCCACTGCCACTTTTCACCACGTGACTGGCA 3019 | | | || |||||||| ||| |||| |||||||||| | || |||||||| Sbjct 5873 AGGAGAGCTGTACTTTGACTTCAAC------CACTTCCACTTTTCATCCCGAGACTGGCA 5926 Query 3020 GCGACTCATCAACAACAACTGGGGATTCCGGCCCAAGAGACTCAGCTTCAAGCTCTTCAA 3079 || ||| |||| ||||||||||| ||||||||||| ||||| | |||||| | |||| Sbjct 5927 GCATCTCGTCAATAACAACTGGGGTGTCCGGCCCAAGTGACTCGGTTTCAAGTTATTCAC 5986 Query 3080 CATCCAGGTCAAGGAGGTCACG-CAGAATGAAGGCACCAAGACCATCGCCAATAACCTCA 3138 ||| | ||||||||||||||| ||| || |||| ||||||||||||||| |||||| Sbjct 5987 CATATAAGTCAAGGAGGTCACGACAG-TCGACAGCACAAAGACCATCGCCAATGACCTCA 6045 Query 3139 CCAGCACCATCCAGGTGTTTACGG--ACTCGGAGTACCAGCTGCCGTACGTTCTCGGCTC 3196 |||||||||||||||||||| || || |||| | | ||| |||| ||| ||| Sbjct 6046 CCAGCACCATCCAGGTGTTTGTGGACACACGGACTGTCGGCTCCCGTCCGTGACTGGCAA 6105 Query 3197 TGCCCACCAGGGCTGCCTGCCTCCGTTCCCGGCGGACGTGTTCATGATTCCCCAGTACGG 3256 ||||||| | || ||||| || || || ||||| | || || ||||| || || ||||| Sbjct 6106 TGCCCACGAAGGGTGCCTACCCCCATTTCCGGCCTATGTCTTTATGATGCCTCAATACGG 6165 Query 3257 CTACCTAACACTCAACAACGGTAGTCAGGCCGTGGGACGCTCCTCCTTCTACTGCCTGGA 3316 ||||| || ||||||| || | |||||| | | ||| ||| || ||||| Sbjct 6166 ATACCTGACTTTCAACAATGGGCACAATGCCGTGCCCAGGAGCACCTACTATTGTCTGGA 6225 Query 3317 ATACTTTCCTTCGCAGATGCTGAGAACCGGCAACAACTTCCAGTTTACTTACACCTTCGA 3376 | |||||| | ||||| ||||| ||||||||||| |||| ||| ||| || Sbjct 6226 GTGCTTTCCCAGAAAAATGCTAAGAACAGGCAACAACTTTGCCTTTAGGTACGACTTTGA 6285 Query 3377 GGACGTGCCTTTCCACAGCAGCTACGCCCACAGCCAGAGCTTGGACCGGCTGATGAATCC 3436 ||| || ||||| || | ||| |||||||||||| |||||||||||||| || Sbjct 6286 GGAGGTACCTTTTCAGTAGATGTACATACACAGCCAGAGCACTGACCGGCTGATGAACCC 6345 Query 3437 TCTGATTGACCAGTACCTGT 3456 ||| | ||| ||||| ||| Sbjct 6346 GCTGTTGGACTAGTACTTGT 6365 Score = 212 bits (234), Expect = 2e-51 Identities = 226/296 (76%), Gaps = 2/296 (1%) Strand=Plus/Plus Query 3945 TGGCAGAACCGGGACGTGTACCTGCAGGGTCCCATCTGGGCCAAGATTCCTCACACGGAC 4004 ||||||||| | ||| | ||||| ||||| | |||||||||||| |||| ||||| ||| Sbjct 6822 TGGCAGAACTGAGACATCTACCTCCAGGGCCTGATCTGGGCCAAGGTTCCACACACTGAC 6881 Query 4005 GGCAACTTCCACCCGTCTCCGCTGATGGGCGGCTTTGGCCTGAAACATCCTCCGCCTCAG 4064 || |||| | | |||||| || ||||| || ||||| || || | || || |||||| Sbjct 6882 GGACACTTTTATCTGTCTCCTCTCATGGGGGGATTTGGTCTCAAGAAGCCCCCTCCTCAG 6941 Query 4065 ATCCTGATCAAGAACACGCCTGTACCTGCGGATCCTCCGACCACCTTCAACCAGTCA-AA 4123 |||||| |||||||||| || || |||| || ||||| ||| || ||| | || Sbjct 6942 ATCCTGGTCAAGAACACCCCGGTTACTGCCGACCCTCCAGTGGAATTC-ACAAGTGACAA 7000 Query 4124 GCTGAACTCTTTCATCACGCAATACAGCACCGGACAGGTCAGCGTGGAAATTGAATGGGA 4183 ||| ||| |||||||| ||||| ||||| ||||| || | |||||||||| ||||||| Sbjct 7001 GCTCAACAGCTTCATCACTCAATATAGCACTGGACAAGTAACCGTGGAAATTAAATGGGA 7060 Query 4184 GCTGCAGAAGGAAAACAGCAAGCGCTGGAACCCCGAGATCCAGTACACCTCCAACT 4239 ||||||| ||| || |||| | |||||||| || || || ||||| ||||||| Sbjct 7061 GCTGCAGCTGGAGGACTCCAAGAGGTGGAACCCAGAAATTCAATACACTTCCAACT 7116 >seq86691 Length=5340 Score = 408 bits (452), Expect = 1e-110 Identities = 529/726 (73%), Gaps = 20/726 (3%) Strand=Plus/Plus Query 2730 ATGGCTGCAGGCGGTGGCGC---ACCAATGGCAGACAATAACGAAGGCGCCGACGGAGTG 2786 |||||| |||| || |||| ||||| || ||||| | || ||||| | ||| Sbjct 4130 ATGGCTACAGGAGGCAGCGCTCCACCAA--GC-GACAACATGCCGGGTGCCGATGCCGTG 4186 Query 2787 GGTAGTTCCTCGGGAAATTGGCATTGCGATTCCACATGGCTGGGCGACAGAGTCATCACC 2846 || || |||||||||||||||| ||||||||||| |||| ||||| || || ||||| Sbjct 4187 GGGAGCTCCTCGGGAAATTGGCGTTGCGATTCCAAATGGATGGGCAACCACGTGCTCACC 4246 Query 2847 ACCAGCACCCGAACCTGGGCCCTGCCCACCTACAACAACCACCTCTACAAGCAAATCTCC 2906 | |||| | ||||||| |||||||| ||||||| |||||| ||||||| ||| Sbjct 4247 AAGTCCACCGGGACCTGGGTCCTGCCCAGCTACAACCACCACCAGTACAAGCGCATC--- 4303 Query 2907 AACGGGACATCGGGAGGAGCCACCAACGACAACACCTACTTCGGCTACAGCACCCCCTGG 2966 ||| || |||||||||| | | ||| | || | ||||| || || ||| Sbjct 4304 -----GAC-TCACACGGAGCCACCAGCAATGACAATTTCTACAGCTACTCTACTCCTTGG 4357 Query 2967 GGGTATTTTGACTTTAACAGATTCCACTGCCACTTTTCACCACGTGACTGGCAGCGACTC 3026 || || |||||||||||| | ||||| | |||||||||||| || ||||||||| | || Sbjct 4358 GGATACTTTGACTTTAACCGCTTCCAGTACCACTTTTCACCCCGAGACTGGCAGGGCTTC 4417 Query 3027 ATCAACAACAACTGGGGATTCCGGCCCAAGAGACTCAGCTTCAAGCTCTTCAACATCCAG 3086 |||||||||| ||||| |||||||||||||||| ||||||||| |||||| ||||| Sbjct 4418 GTCAACAACAATTGGGGTATCCGGCCCAAGAGACTTTCCTTCAAGCTGTTCAACGTCCAG 4477 Query 3087 GTCAAGGAGGTCACGCAGAATGAAGGCACCAAGACCATCGCCAATAACCTCACCAGCACC 3146 || ||||||||||| | | || || ||| ||||||| |||||||||||||||||||| Sbjct 4478 GTTAAGGAGGTCACTACGCAGGAGGGAGCCACGACCATCACCAATAACCTCACCAGCACC 4537 Query 3147 ATCCAGGTGTTTACGGACTCGGAGTACCAGCTGCCGTACGTTCTCGGCTCTGCCCACCAG 3206 |||||||| ||| ||||| |||| | |||| | ||| |||| || ||| || ||| || Sbjct 4538 ATCCAGGTCTTTGCGGACGCGGACTGCCAGTTCCCGCACGTGCTAGGCAACGCGCACGAG 4597 Query 3207 GGCTGCCTGCCTCCGTTCCCGGCGGACGTGTTCATGATTCCCCAGTACGGCTACCTAACA 3266 || |||||||| ||||| ||||| |||| | |||||||||| | | || Sbjct 4598 GGAACGCTGCCTCCCTTCCC----GACGTCTTCACCGTGCCCCAGTACGCCGA-CTGCAG 4652 Query 3267 CTCAACAACGGTAGTCAGGCCGTGGGACGCTCCTCCTTCTACTGCCTGGAATACTTTCCT 3326 ||||||||||| | ||| | ||| | ||||| |||||| | ||| | | Sbjct 4653 CTCAACAACGGGGACAAAGCCACAGCGCGCAGCAGCTTCTGCTGCCTCGGGTACATGCGG 4712 Query 3327 TCGCAGATGCTGAGAACCGGCAACAACTTCCAGTTTACTTACACCTTCGAGGACGTGCCT 3386 ||||||||| | ||||||||||||| | || | ||| || |||||||| || Sbjct 4713 AGCCAGATGCTGCGGACCGGCAACAACTACGCCTTCATGTACCAGTTTGAGGACGTACCC 4772 Query 3387 TTCCACAGCAGCTACGCCCACAGCCAGAGCTTGGACCGGCTGATGAATCCTCTGATTGAC 3446 | ||| | | ||| |||| ||||||| |||||| |||||||| || | || ||| Sbjct 4773 TCTCACTGGATGTACATGCACATCCAGAGCCTGGACCACCTGATGAAGCCGTTCATGGAC 4832 Query 3447 CAGTAC 3452 |||||| Sbjct 4833 CAGTAC 4838 Score = 401 bits (444), Expect = 2e-108 Identities = 535/737 (73%), Gaps = 6/737 (1%) Strand=Plus/Plus Query 902 TATATGGAGCTGGTCGGGTGGCTGGTGGACCGGGGCATCACCTCCGAGAAGCAGTGGATC 961 || |||||||| || ||||||||||| ||||| || || |||| ||| |||| Sbjct 2264 TACATGGAGCTCGTTAACTGGCTGGTGGAGATCGGCATTACGTCAGAGA-GCAACGGATT 2322 Query 962 CAGGAGGACCAGGCCTCGTACATCTCCTTCAACGCCGCCTCCAACTCGCGGTCCCAGATC 1021 |||||| | |||| || | ||||| | |||||| | | | | || | || | | Sbjct 2323 CAGGAGAAGCAGGAATCCTGTATCTCTTACAACGCGACGGGCGATGCCCGCTTGCAAAAC 2382 Query 1022 AAGGCCGCGCTGGACAATGCCGGCAAGATCATGGCGCTGACCAAATCCGCGCCCGACTAC 1081 ||| | || |||||||| |||||| | ||| ||| ||||||| | || | ||| | Sbjct 2383 AAGTCGGCTCTGGACAACGCCGGCCAAATCGTGGGCCTGACCACCACGGCCTCAGACGGC 2442 Query 1082 CTGGTGGGGCCCTCGCTGCCCGCGGACATTACCCAGAACCGCATCTACCGCATCCTCGCT 1141 | ||| || || | | ||| | | ||| | |||||||| | ||||| | Sbjct 2443 CGGGTCGGTTCCGCACCGCCAGAG--CATCGAGGACGACCGCATCCGCTGCATCTTTCAC 2500 Query 1142 CTCAACGGCTACGACCCTGCCTACGCCGGCTCCGTCTTTCTCGGCTGGGCTCAGAAAAAG 1201 ||| |||||| || ||| ||||||||||||||||| | || | |||| | || |||| Sbjct 2501 CTCCACGGCTGCGGCCCGGCCTACGCCGGCTCCGTGGTGCTGGCCTGGTGCCGGAGAAAG 2560 Query 1202 TTCGGGAAACGCAACACCATCTGGCTGTTTGGACCCGCCACCACCGGCAAGACCAACATT 1261 | || | || ||| || ||||||| |||||||| || |||| || ||||||| | || Sbjct 2561 TCTGGCCAGCGGAACGCCGTCTGGCTCTTTGGACCTGCGCCCACGGGAAAGACCAGCGTT 2620 Query 1262 GCGGAAGCCATCGCCCACGCCGTGCCCTTCTACGGCTGCGTCAACTGGACCAATGAGAAC 1321 |||| | | || || || |||||||| || || ||||||||||||||| |||||| Sbjct 2621 GCGGTGTCTACTGCGCATGCTGTGCCCTTTTATGGGCGCGTCAACTGGACCAGCGAGAAC 2680 Query 1322 TTTCCCTTCAATGATTGCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGCAAGATGACG 1381 |||| | || ||||||| || ||||||| |||||| |||||||||||||||| |||| || Sbjct 2681 TTTCTC-TCCATGATTGTGTGGACAAGACGGTGATTTGGTGGGAGGAGGGCACGATGGCG 2739 Query 1382 GCCAAGGTCGTGGAGTCCGCCAAGGCCATTCTCGGCGGCAGCAAGGTGCGCGTGGACCAA 1441 ||||| ||||||||||| ||| ||||||| || || ||| ||| | |||||||| Sbjct 2740 GCCAAAGTCGTGGAGTCGGCCGAGGCCATCCT-GGGGGCTCGGCTGTGTGAGTGGACCAG 2798 Query 1442 AAGTGCAAGTCGTCCGCCCAGATCGACCCCACCCCCGTGATCGTCACCTCCAACACCAAC 1501 || |||||| | || |||| || ||||| || || ||| ||||||||||||||||| Sbjct 2799 AAATGCAAG-CCTCGCAGCAGACGGAACCCACACCGGTCATCATCACCTCCAACACCAAC 2857 Query 1502 ATGTGCGCCGTGATTGACGGGAACAGCACCACCTTCGAGCACCAGCAGCCTCTCCAGGAC 1561 |||| || | |||||||| ||| | ||||| || ||||| ||||| | |||| | Sbjct 2858 ATGTCCGTGGCCATTGACGGAAACTCGAAGACCTTTGAACACCAACAGCCGTTACAGGCC 2917 Query 1562 CGGATGTTTAAGTTCGAACTCACCCGCCGTCTGGAGCACGACTTTGGCAAGGTGACAAAG 1621 || ||||| ||||| ||||| || ||| ||| || |||||||| || ||||| ||| Sbjct 2918 CGCATGTTCAAGTTTGAACTGACTTAGCGTTTGGTGCCAGACTTTGGGAAAGTGACTAAG 2977 Query 1622 CAGGAAGTCAAAGAGTT 1638 ||||| |||||||| || Sbjct 2978 CAGGAGGTCAAAGACTT 2994 Score = 141 bits (156), Expect = 3e-30 Identities = 295/433 (68%), Gaps = 20/433 (5%) Strand=Plus/Plus Query 2005 CTGTGCGA--TTCATCATCTGCTGGGGCGGGCTCCCGAGATTGCTTGCTCGGCCTGCGAT 2062 ||||||| |||||||| | ||||| | ||| || ||| || || ||||| || Sbjct 3427 CTGTGCGCAGTTCATCATATTCTGGGCCCGGCGCCAGAGGGCCAGTGTTCTGCCTGTAAT 3486 Query 2063 CTGGTCAACGTGGACC-------TGGATGACTGTGTTTCTGAGCAATAAATGACTTAAAC 2115 || | ||| || ||| | ||| |||| | || |||| | ||||| |||| Sbjct 3487 CTCGCCAATGTTGACAATGTTGATCGATAACTGCAATAAAGAACAATGATTGACTCAAAC 3546 Query 2116 CAGGTATGGCTGCCGATGGTTATCTTCCAGATTGGCTCGAGGACAACCTCTCTGAGGGCA 2175 || |||||||| |||||||| ||||||| ||| | ||||||| |||||||||| Sbjct 3547 -AGATATGGCTG---ATGGTTATTTTCCAGACTGGTTGGAGGACACTTTCTCTGAGGGTC 3602 Query 2176 TTCGCGAGTGG--TGGGCGCTGAAACCTGGAGCCCCGAAGCCCAAAGCCAACCAGCAAAA 2233 ||| ||||| | || || ||||||| || || || | ||||||| | Sbjct 3603 GGCGCCAGTGGAATAAATGC--AAGGCTGGAGCGCCCAAACCGCGGCCTCACCAGCATCA 3660 Query 2234 GCAGGACGACGGCCGGGGTCTGGTGCTTCCTGGCTACAAGTACCTCGGACCCTTCAACGG 2293 || ||| |||| |||||| ||||| || || || || ||| | ||||||||||| Sbjct 3661 CCAAGACTCTTCTCGGGTTCTGGTCCTTCCGGGATATAAATATCTCAGTCCCTTCAACGG 3720 Query 2294 ACTCGACAAGGGGGAGCCCGTCAACGCGGCGGACGCAGCGGCCCTCGAGCACGACAAGGC 2353 || || ||||| || | ||||| ||| ||||| | || || ||||| | |||| Sbjct 3721 TCTGGATAAGGGAGACCTGGTCAATCGGGCAGACGCCGTCGCTCTAGAGCATG--AAGG- 3777 Query 2354 CTACGACCAGCAGCTGCAGGCGGGTGACAATCCGTACCTGCGGTATAACCACGCCGACGC 2413 |||| | ||||||| ||||||| |||| || | ||| ||| ||||| |||||| Sbjct 3778 CTACAGCGAGCAGCTCGAGGCGGGACACAACCCCTCCCTCAAGTACAACCATGCCGACAG 3837 Query 2414 CGAGTTTCAGGAG 2426 ||||| |||||| Sbjct 3838 AGAGTTCCAGGAG 3850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 13921118935000