Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013-
09-15] 160,500 sequences; 1,926,439,238 total letters
Query= NC_006261.1
Length=4393
Score E
Sequences producing significant alignments: (Bits) Value
seq99286 482 6e-133
seq86691 408 1e-110
>seq99286
Length=7566
Score = 482 bits (534), Expect = 6e-133
Identities = 917/1340 (68%), Gaps = 80/1340 (6%)
Strand=Plus/Plus
Query 2127 GCCGATGGTTATCTTCCAGATTGGCTCGAGGACAACCTCTCTGAGGGCATTCGCGAGTGG 2186
|| ||||||||| |||| |||| | ||||| | ||| ||||| ||| || |||| |||
Sbjct 5096 GCTGATGGTTATTTTCCGGATTAATTGGAGGATACCCTTTCTGAAGGCTTTTGCGACTGG 5155
Query 2187 TGGGCGCTGAAACCTGGAGCCCCGAAGCCCAAAGCCAACCAGCAAAAGCAGGACGACGGC 2246
| | | | ||||| || ||| || ||||||| |||| ||| |
Sbjct 5156 TAG-CACCCAAACC---------GAGGCCTAA------CCAGCAACAGCAAGACTCTGCT 5199
Query 2247 CGGGGTCTGGTGCTTCCTGGCTACAAGTACCTCGGACCCTTCAACGGACTCGACAAGGGG 2306
||||||||||| ||||| || | || || ||||| ||| ||||||| ||||| || ||
Sbjct 5200 CGGGGTCTGGTCCTTCCAGGATGTAAATATCTCGGTCCCCTCAACGGTCTCGATAAAGGA 5259
Query 2307 GAGCCCGTCAACGCGGCGGACGCAGCGGCCCTCGAGCACGACAAGGCCTACGACCAGCAG 2366
| | || ||| || ||| | | |||| |||||||||| |||| | |||||
Sbjct 5260 GGCGCGGTTAACAGAGCAGACACCACTGCCCGAGAGCACGACATCAACTACCGCGAGCAG 5319
Query 2367 CTGCAGGCGGGTGACAATCCGTACCTGCGGTATAACCACGCCGACGCCGAGTTTCAGGAG 2426
||| |||| || |||||||| ||||| || ||| || | ||| || |||||| ||
Sbjct 5320 CTGGAGGCAGGAGACAATCCTTACCTCAAGTCCAACGACACTGACCGAGACTTTCAGAAG 5379
Query 2427 CGTCTGCAAGAAGATACGTCTTTTGGGGGCAACCTCGGGCGAGCAGTCTTCCAGGCCAAG 2486
|| || || || | ||||||||| |||| ||||||||| ||||||||
Sbjct 5380 AAGCTCTCTGACGACACCTTTTTTGGGGGAAACCAAAAAAAGGCAGTCTTCTAGGCCAAG 5439
Query 2487 AAGCGGGTTCTCGAACCTCTCGGTCTGGTTGAGGAAG---GCGCTAAGACGGCTCCTGGA 2543
||| | | || || ||| | ||||||| ||| ||| |||||| ||| ||||||||
Sbjct 5440 AAGAGTCTGCTGGAGCCTTTTGGTCTGGCGGAGCAAGAGGGCGCTAGGACAGCTCCTGGG 5499
Query 2544 AAGAAGAGACCGGTAGAGCCATCACCCCAGCGTTCTCCAGACTCCTCTACG-GGCATCGG 2602
|||||| | || |||| |||| || | || | | || | ||| ||| |
Sbjct 5500 AAGAAGCG--CGCTAGACCCAT--------CGAACCCCCGCCGCC-CAACGAGGCGTTA- 5547
Query 2603 CAAGAAAGGCCAACAGCCCGCCAGAAAAAGACTCAATTTTGGTCAGACTGGCGACTCAGA 2662
| || | || || ||||||| || | ||| ||| |
Sbjct 5548 CTTGAGCGACCCCGAGTCCGCCAGGAAC--------TAGTGG-------GGCCA------ 5586
Query 2663 GTCAGTTCCAGACCCTCAACCTCTCGGAGAACCTCCAGCAGCGCCCTCTGGTGTGGGACC 2722
|| | || || || | || | ||| | ||||||| ||| | ||| |||
Sbjct 5587 -TCCGATCAAG---CTGGATCTTT---AGACTCAGCAGCAGCCCCCGTCAATTTGGAACC 5639
Query 2723 TAATACAATGGCTGCAGGCGGTGGCGCACCAATGGCAGACAATAACGAAGGCGCCGACGG 2782
|||||||||||||||||| ||||| ||||| ||| ||||| | | | |||| |||
Sbjct 5640 TAATACAATGGCTGCAGGATGTGGCTCACCAGTGGACGACAACATGCAGTGTGCCGCCGG 5699
Query 2783 AGTGGGTAGTTCCTCGGGAAATTGGCATTGCGATTCCACATGGCTGGGCGACAGAGTCAT 2842
|||||| | ||| || |||||||| ||||| ||| ||| |||| ||| ||||
Sbjct 5700 AGTGGGCTCTGCCTGCGGTGATTGGCATGGCGATACCAGGTGGATGGGAGACCTCATCAT 5759
Query 2843 CACCACCAGCACCCGAACCTGGGCCCTGCCCACCTACAACAACCACCTCTACAAGCAAAT 2902
|| | |||| | ||| ||| ||||||||||| ||||||||| |||||| || |
Sbjct 5760 TACAAAGTCCACCTGGACCGGGGTCCTGCCCACCTT-AACAACCACGTCTACAGGCGGAC 5818
Query 2903 CTCCAACGGGACATCGGGAGGAGCCACCAACGACAACACCTACTTCGGCTACAGCACCCC 2962
| ||| | || ||| | ||| ||| ||||||||||||| || ||||||||||
Sbjct 5819 CACCA--GTTCCACCGGCATCAGC----AACAACAACACCTACTTTGGTTACAGCACCCG 5872
Query 2963 CTGGGGG---TATTTTGACTTTAACAGATTCCACTGCCACTTTTCACCACGTGACTGGCA 3019
| | | || |||||||| ||| |||| |||||||||| | || ||||||||
Sbjct 5873 AGGAGAGCTGTACTTTGACTTCAAC------CACTTCCACTTTTCATCCCGAGACTGGCA 5926
Query 3020 GCGACTCATCAACAACAACTGGGGATTCCGGCCCAAGAGACTCAGCTTCAAGCTCTTCAA 3079
|| ||| |||| ||||||||||| ||||||||||| ||||| | |||||| | ||||
Sbjct 5927 GCATCTCGTCAATAACAACTGGGGTGTCCGGCCCAAGTGACTCGGTTTCAAGTTATTCAC 5986
Query 3080 CATCCAGGTCAAGGAGGTCACG-CAGAATGAAGGCACCAAGACCATCGCCAATAACCTCA 3138
||| | ||||||||||||||| ||| || |||| ||||||||||||||| ||||||
Sbjct 5987 CATATAAGTCAAGGAGGTCACGACAG-TCGACAGCACAAAGACCATCGCCAATGACCTCA 6045
Query 3139 CCAGCACCATCCAGGTGTTTACGG--ACTCGGAGTACCAGCTGCCGTACGTTCTCGGCTC 3196
|||||||||||||||||||| || || |||| | | ||| |||| ||| |||
Sbjct 6046 CCAGCACCATCCAGGTGTTTGTGGACACACGGACTGTCGGCTCCCGTCCGTGACTGGCAA 6105
Query 3197 TGCCCACCAGGGCTGCCTGCCTCCGTTCCCGGCGGACGTGTTCATGATTCCCCAGTACGG 3256
||||||| | || ||||| || || || ||||| | || || ||||| || || |||||
Sbjct 6106 TGCCCACGAAGGGTGCCTACCCCCATTTCCGGCCTATGTCTTTATGATGCCTCAATACGG 6165
Query 3257 CTACCTAACACTCAACAACGGTAGTCAGGCCGTGGGACGCTCCTCCTTCTACTGCCTGGA 3316
||||| || ||||||| || | |||||| | | ||| ||| || |||||
Sbjct 6166 ATACCTGACTTTCAACAATGGGCACAATGCCGTGCCCAGGAGCACCTACTATTGTCTGGA 6225
Query 3317 ATACTTTCCTTCGCAGATGCTGAGAACCGGCAACAACTTCCAGTTTACTTACACCTTCGA 3376
| |||||| | ||||| ||||| ||||||||||| |||| ||| ||| ||
Sbjct 6226 GTGCTTTCCCAGAAAAATGCTAAGAACAGGCAACAACTTTGCCTTTAGGTACGACTTTGA 6285
Query 3377 GGACGTGCCTTTCCACAGCAGCTACGCCCACAGCCAGAGCTTGGACCGGCTGATGAATCC 3436
||| || ||||| || | ||| |||||||||||| |||||||||||||| ||
Sbjct 6286 GGAGGTACCTTTTCAGTAGATGTACATACACAGCCAGAGCACTGACCGGCTGATGAACCC 6345
Query 3437 TCTGATTGACCAGTACCTGT 3456
||| | ||| ||||| |||
Sbjct 6346 GCTGTTGGACTAGTACTTGT 6365
Score = 212 bits (234), Expect = 2e-51
Identities = 226/296 (76%), Gaps = 2/296 (1%)
Strand=Plus/Plus
Query 3945 TGGCAGAACCGGGACGTGTACCTGCAGGGTCCCATCTGGGCCAAGATTCCTCACACGGAC 4004
||||||||| | ||| | ||||| ||||| | |||||||||||| |||| ||||| |||
Sbjct 6822 TGGCAGAACTGAGACATCTACCTCCAGGGCCTGATCTGGGCCAAGGTTCCACACACTGAC 6881
Query 4005 GGCAACTTCCACCCGTCTCCGCTGATGGGCGGCTTTGGCCTGAAACATCCTCCGCCTCAG 4064
|| |||| | | |||||| || ||||| || ||||| || || | || || ||||||
Sbjct 6882 GGACACTTTTATCTGTCTCCTCTCATGGGGGGATTTGGTCTCAAGAAGCCCCCTCCTCAG 6941
Query 4065 ATCCTGATCAAGAACACGCCTGTACCTGCGGATCCTCCGACCACCTTCAACCAGTCA-AA 4123
|||||| |||||||||| || || |||| || ||||| ||| || ||| | ||
Sbjct 6942 ATCCTGGTCAAGAACACCCCGGTTACTGCCGACCCTCCAGTGGAATTC-ACAAGTGACAA 7000
Query 4124 GCTGAACTCTTTCATCACGCAATACAGCACCGGACAGGTCAGCGTGGAAATTGAATGGGA 4183
||| ||| |||||||| ||||| ||||| ||||| || | |||||||||| |||||||
Sbjct 7001 GCTCAACAGCTTCATCACTCAATATAGCACTGGACAAGTAACCGTGGAAATTAAATGGGA 7060
Query 4184 GCTGCAGAAGGAAAACAGCAAGCGCTGGAACCCCGAGATCCAGTACACCTCCAACT 4239
||||||| ||| || |||| | |||||||| || || || ||||| |||||||
Sbjct 7061 GCTGCAGCTGGAGGACTCCAAGAGGTGGAACCCAGAAATTCAATACACTTCCAACT 7116
>seq86691
Length=5340
Score = 408 bits (452), Expect = 1e-110
Identities = 529/726 (73%), Gaps = 20/726 (3%)
Strand=Plus/Plus
Query 2730 ATGGCTGCAGGCGGTGGCGC---ACCAATGGCAGACAATAACGAAGGCGCCGACGGAGTG 2786
|||||| |||| || |||| ||||| || ||||| | || ||||| | |||
Sbjct 4130 ATGGCTACAGGAGGCAGCGCTCCACCAA--GC-GACAACATGCCGGGTGCCGATGCCGTG 4186
Query 2787 GGTAGTTCCTCGGGAAATTGGCATTGCGATTCCACATGGCTGGGCGACAGAGTCATCACC 2846
|| || |||||||||||||||| ||||||||||| |||| ||||| || || |||||
Sbjct 4187 GGGAGCTCCTCGGGAAATTGGCGTTGCGATTCCAAATGGATGGGCAACCACGTGCTCACC 4246
Query 2847 ACCAGCACCCGAACCTGGGCCCTGCCCACCTACAACAACCACCTCTACAAGCAAATCTCC 2906
| |||| | ||||||| |||||||| ||||||| |||||| ||||||| |||
Sbjct 4247 AAGTCCACCGGGACCTGGGTCCTGCCCAGCTACAACCACCACCAGTACAAGCGCATC--- 4303
Query 2907 AACGGGACATCGGGAGGAGCCACCAACGACAACACCTACTTCGGCTACAGCACCCCCTGG 2966
||| || |||||||||| | | ||| | || | ||||| || || |||
Sbjct 4304 -----GAC-TCACACGGAGCCACCAGCAATGACAATTTCTACAGCTACTCTACTCCTTGG 4357
Query 2967 GGGTATTTTGACTTTAACAGATTCCACTGCCACTTTTCACCACGTGACTGGCAGCGACTC 3026
|| || |||||||||||| | ||||| | |||||||||||| || ||||||||| | ||
Sbjct 4358 GGATACTTTGACTTTAACCGCTTCCAGTACCACTTTTCACCCCGAGACTGGCAGGGCTTC 4417
Query 3027 ATCAACAACAACTGGGGATTCCGGCCCAAGAGACTCAGCTTCAAGCTCTTCAACATCCAG 3086
|||||||||| ||||| |||||||||||||||| ||||||||| |||||| |||||
Sbjct 4418 GTCAACAACAATTGGGGTATCCGGCCCAAGAGACTTTCCTTCAAGCTGTTCAACGTCCAG 4477
Query 3087 GTCAAGGAGGTCACGCAGAATGAAGGCACCAAGACCATCGCCAATAACCTCACCAGCACC 3146
|| ||||||||||| | | || || ||| ||||||| ||||||||||||||||||||
Sbjct 4478 GTTAAGGAGGTCACTACGCAGGAGGGAGCCACGACCATCACCAATAACCTCACCAGCACC 4537
Query 3147 ATCCAGGTGTTTACGGACTCGGAGTACCAGCTGCCGTACGTTCTCGGCTCTGCCCACCAG 3206
|||||||| ||| ||||| |||| | |||| | ||| |||| || ||| || ||| ||
Sbjct 4538 ATCCAGGTCTTTGCGGACGCGGACTGCCAGTTCCCGCACGTGCTAGGCAACGCGCACGAG 4597
Query 3207 GGCTGCCTGCCTCCGTTCCCGGCGGACGTGTTCATGATTCCCCAGTACGGCTACCTAACA 3266
|| |||||||| ||||| ||||| |||| | |||||||||| | | ||
Sbjct 4598 GGAACGCTGCCTCCCTTCCC----GACGTCTTCACCGTGCCCCAGTACGCCGA-CTGCAG 4652
Query 3267 CTCAACAACGGTAGTCAGGCCGTGGGACGCTCCTCCTTCTACTGCCTGGAATACTTTCCT 3326
||||||||||| | ||| | ||| | ||||| |||||| | ||| | |
Sbjct 4653 CTCAACAACGGGGACAAAGCCACAGCGCGCAGCAGCTTCTGCTGCCTCGGGTACATGCGG 4712
Query 3327 TCGCAGATGCTGAGAACCGGCAACAACTTCCAGTTTACTTACACCTTCGAGGACGTGCCT 3386
||||||||| | ||||||||||||| | || | ||| || |||||||| ||
Sbjct 4713 AGCCAGATGCTGCGGACCGGCAACAACTACGCCTTCATGTACCAGTTTGAGGACGTACCC 4772
Query 3387 TTCCACAGCAGCTACGCCCACAGCCAGAGCTTGGACCGGCTGATGAATCCTCTGATTGAC 3446
| ||| | | ||| |||| ||||||| |||||| |||||||| || | || |||
Sbjct 4773 TCTCACTGGATGTACATGCACATCCAGAGCCTGGACCACCTGATGAAGCCGTTCATGGAC 4832
Query 3447 CAGTAC 3452
||||||
Sbjct 4833 CAGTAC 4838
Score = 401 bits (444), Expect = 2e-108
Identities = 535/737 (73%), Gaps = 6/737 (1%)
Strand=Plus/Plus
Query 902 TATATGGAGCTGGTCGGGTGGCTGGTGGACCGGGGCATCACCTCCGAGAAGCAGTGGATC 961
|| |||||||| || ||||||||||| ||||| || || |||| ||| ||||
Sbjct 2264 TACATGGAGCTCGTTAACTGGCTGGTGGAGATCGGCATTACGTCAGAGA-GCAACGGATT 2322
Query 962 CAGGAGGACCAGGCCTCGTACATCTCCTTCAACGCCGCCTCCAACTCGCGGTCCCAGATC 1021
|||||| | |||| || | ||||| | |||||| | | | | || | || | |
Sbjct 2323 CAGGAGAAGCAGGAATCCTGTATCTCTTACAACGCGACGGGCGATGCCCGCTTGCAAAAC 2382
Query 1022 AAGGCCGCGCTGGACAATGCCGGCAAGATCATGGCGCTGACCAAATCCGCGCCCGACTAC 1081
||| | || |||||||| |||||| | ||| ||| ||||||| | || | ||| |
Sbjct 2383 AAGTCGGCTCTGGACAACGCCGGCCAAATCGTGGGCCTGACCACCACGGCCTCAGACGGC 2442
Query 1082 CTGGTGGGGCCCTCGCTGCCCGCGGACATTACCCAGAACCGCATCTACCGCATCCTCGCT 1141
| ||| || || | | ||| | | ||| | |||||||| | ||||| |
Sbjct 2443 CGGGTCGGTTCCGCACCGCCAGAG--CATCGAGGACGACCGCATCCGCTGCATCTTTCAC 2500
Query 1142 CTCAACGGCTACGACCCTGCCTACGCCGGCTCCGTCTTTCTCGGCTGGGCTCAGAAAAAG 1201
||| |||||| || ||| ||||||||||||||||| | || | |||| | || ||||
Sbjct 2501 CTCCACGGCTGCGGCCCGGCCTACGCCGGCTCCGTGGTGCTGGCCTGGTGCCGGAGAAAG 2560
Query 1202 TTCGGGAAACGCAACACCATCTGGCTGTTTGGACCCGCCACCACCGGCAAGACCAACATT 1261
| || | || ||| || ||||||| |||||||| || |||| || ||||||| | ||
Sbjct 2561 TCTGGCCAGCGGAACGCCGTCTGGCTCTTTGGACCTGCGCCCACGGGAAAGACCAGCGTT 2620
Query 1262 GCGGAAGCCATCGCCCACGCCGTGCCCTTCTACGGCTGCGTCAACTGGACCAATGAGAAC 1321
|||| | | || || || |||||||| || || ||||||||||||||| ||||||
Sbjct 2621 GCGGTGTCTACTGCGCATGCTGTGCCCTTTTATGGGCGCGTCAACTGGACCAGCGAGAAC 2680
Query 1322 TTTCCCTTCAATGATTGCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGCAAGATGACG 1381
|||| | || ||||||| || ||||||| |||||| |||||||||||||||| |||| ||
Sbjct 2681 TTTCTC-TCCATGATTGTGTGGACAAGACGGTGATTTGGTGGGAGGAGGGCACGATGGCG 2739
Query 1382 GCCAAGGTCGTGGAGTCCGCCAAGGCCATTCTCGGCGGCAGCAAGGTGCGCGTGGACCAA 1441
||||| ||||||||||| ||| ||||||| || || ||| ||| | ||||||||
Sbjct 2740 GCCAAAGTCGTGGAGTCGGCCGAGGCCATCCT-GGGGGCTCGGCTGTGTGAGTGGACCAG 2798
Query 1442 AAGTGCAAGTCGTCCGCCCAGATCGACCCCACCCCCGTGATCGTCACCTCCAACACCAAC 1501
|| |||||| | || |||| || ||||| || || ||| |||||||||||||||||
Sbjct 2799 AAATGCAAG-CCTCGCAGCAGACGGAACCCACACCGGTCATCATCACCTCCAACACCAAC 2857
Query 1502 ATGTGCGCCGTGATTGACGGGAACAGCACCACCTTCGAGCACCAGCAGCCTCTCCAGGAC 1561
|||| || | |||||||| ||| | ||||| || ||||| ||||| | |||| |
Sbjct 2858 ATGTCCGTGGCCATTGACGGAAACTCGAAGACCTTTGAACACCAACAGCCGTTACAGGCC 2917
Query 1562 CGGATGTTTAAGTTCGAACTCACCCGCCGTCTGGAGCACGACTTTGGCAAGGTGACAAAG 1621
|| ||||| ||||| ||||| || ||| ||| || |||||||| || ||||| |||
Sbjct 2918 CGCATGTTCAAGTTTGAACTGACTTAGCGTTTGGTGCCAGACTTTGGGAAAGTGACTAAG 2977
Query 1622 CAGGAAGTCAAAGAGTT 1638
||||| |||||||| ||
Sbjct 2978 CAGGAGGTCAAAGACTT 2994
Score = 141 bits (156), Expect = 3e-30
Identities = 295/433 (68%), Gaps = 20/433 (5%)
Strand=Plus/Plus
Query 2005 CTGTGCGA--TTCATCATCTGCTGGGGCGGGCTCCCGAGATTGCTTGCTCGGCCTGCGAT 2062
||||||| |||||||| | ||||| | ||| || ||| || || ||||| ||
Sbjct 3427 CTGTGCGCAGTTCATCATATTCTGGGCCCGGCGCCAGAGGGCCAGTGTTCTGCCTGTAAT 3486
Query 2063 CTGGTCAACGTGGACC-------TGGATGACTGTGTTTCTGAGCAATAAATGACTTAAAC 2115
|| | ||| || ||| | ||| |||| | || |||| | ||||| ||||
Sbjct 3487 CTCGCCAATGTTGACAATGTTGATCGATAACTGCAATAAAGAACAATGATTGACTCAAAC 3546
Query 2116 CAGGTATGGCTGCCGATGGTTATCTTCCAGATTGGCTCGAGGACAACCTCTCTGAGGGCA 2175
|| |||||||| |||||||| ||||||| ||| | ||||||| ||||||||||
Sbjct 3547 -AGATATGGCTG---ATGGTTATTTTCCAGACTGGTTGGAGGACACTTTCTCTGAGGGTC 3602
Query 2176 TTCGCGAGTGG--TGGGCGCTGAAACCTGGAGCCCCGAAGCCCAAAGCCAACCAGCAAAA 2233
||| ||||| | || || ||||||| || || || | ||||||| |
Sbjct 3603 GGCGCCAGTGGAATAAATGC--AAGGCTGGAGCGCCCAAACCGCGGCCTCACCAGCATCA 3660
Query 2234 GCAGGACGACGGCCGGGGTCTGGTGCTTCCTGGCTACAAGTACCTCGGACCCTTCAACGG 2293
|| ||| |||| |||||| ||||| || || || || ||| | |||||||||||
Sbjct 3661 CCAAGACTCTTCTCGGGTTCTGGTCCTTCCGGGATATAAATATCTCAGTCCCTTCAACGG 3720
Query 2294 ACTCGACAAGGGGGAGCCCGTCAACGCGGCGGACGCAGCGGCCCTCGAGCACGACAAGGC 2353
|| || ||||| || | ||||| ||| ||||| | || || ||||| | ||||
Sbjct 3721 TCTGGATAAGGGAGACCTGGTCAATCGGGCAGACGCCGTCGCTCTAGAGCATG--AAGG- 3777
Query 2354 CTACGACCAGCAGCTGCAGGCGGGTGACAATCCGTACCTGCGGTATAACCACGCCGACGC 2413
|||| | ||||||| ||||||| |||| || | ||| ||| ||||| ||||||
Sbjct 3778 CTACAGCGAGCAGCTCGAGGCGGGACACAACCCCTCCCTCAAGTACAACCATGCCGACAG 3837
Query 2414 CGAGTTTCAGGAG 2426
||||| ||||||
Sbjct 3838 AGAGTTCCAGGAG 3850
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 13921118935000
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