Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013- 09-15] 160,500 sequences; 1,926,439,238 total letters Query= NC_006263.1 Length=4682 Score E Sequences producing significant alignments: (Bits) Value seq86691 282 1e-72 seq99286 176 1e-40 >seq86691 Length=5340 Score = 282 bits (312), Expect = 1e-72 Identities = 506/727 (70%), Gaps = 18/727 (2%) Strand=Plus/Plus Query 2857 CTGTCATGGCTGAAGGAGGTGGCGGTCCAATGGGCGATG-CAGGCCAAGGTGCCGACGGA 2915 ||||||||||| |||||| ||| |||| |||| || ||| |||||||| | Sbjct 4125 CTGTCATGGCTACAGGAGGCAGCGCTCCACCAAGCGACAACATGCCG-GGTGCCGATGCC 4183 Query 2916 GTGGGCAATTCCTCGGGAAATTGGCATTGCGATTCCCAATGGCTGGACAACGGAGTCGTT 2975 ||||| | |||||||||||||||| |||||||||| ||||| ||| |||| || | Sbjct 4184 GTGGGGAGCTCCTCGGGAAATTGGCGTTGCGATTCCAAATGGATGGGCAACCACGTGCTC 4243 Query 2976 ACCCGAACCACTCGAACCTGGGTCCTGCCCAGCTACAACAACCACTTGTACAAGCGGATC 3035 ||| |||| | |||||||||||||||||||||||| ||||| ||||||||| ||| Sbjct 4244 ACCAAGTCCACCGGGACCTGGGTCCTGCCCAGCTACAACCACCACCAGTACAAGCGCATC 4303 Query 3036 CAAGGACCGGGAGGAACCGACCCCAACAATAAATTCTTTGGATTCAGCACCCCCTGGGGG 3095 | || |||| || | ||| | || |||| | | | || || ||||| Sbjct 4304 GACTCACACGGAG---CCACCAGCAATGACAATTTCTACAGCTACTCTACTCCTTGGGGA 4360 Query 3096 TACTTTGACTACAACCGATTCCACTGCCACTTCTCCCCCCGAGACTGGCAACGACTCATC 3155 |||||||||| ||||| ||||| | |||||| || |||||||||||||| | || || Sbjct 4361 TACTTTGACTTTAACCGCTTCCAGTACCACTTTTCACCCCGAGACTGGCAGGGCTTCGTC 4420 Query 3156 AACAACAACTGGGGCATCCGACCCAAAGCGA-TGCGCTTTAGACTCTTTAACATCCAGGT 3214 |||||||| ||||| ||||| ||| ||| || | ||| | || || ||| ||||||| Sbjct 4421 AACAACAATTGGGGTATCCGGCCC-AAGAGACTTTCCTTCAAGCTGTTCAACGTCCAGGT 4479 Query 3215 TAAAGAAGTCACTGTCCAAGACTCCAACACCACCATCGCCAACAACCTCACCAGCACGGT 3274 ||| || |||||| || || ||| |||||| |||| |||||||||||||| | Sbjct 4480 TAAGGAGGTCACTACGCAGGAGGGAGCCACGACCATCACCAATAACCTCACCAGCACCAT 4539 Query 3275 CCAAGTCTTTGCGGACAAGGACTACCAGCTGCCGTACGTCCTCGG-ATCGGCTACAGAGG 3333 ||| |||||||||||| ||||| |||| | ||| |||| || || | || || |||| Sbjct 4540 CCAGGTCTTTGCGGACGCGGACTGCCAGTTCCCGCACGTGCTAGGCAACGCGCAC-GAGG 4598 Query 3334 GCACCTTCCCGCCGTTCCCAGCGGATATCTACACGATCCCGCAGTATGGTTACTGCACGC 3393 | || | || || ||||| || ||| ||| | || ||||| | |||||| || Sbjct 4599 GAACGCTGCCTCCCTTCCC----GACGTCTTCACCGTGCCCCAGTACGCCGACTGCA-GC 4653 Query 3394 TAAACTACAACAACGAGGCGGTGGATCGTTCGGC--CTTCTACTGTCTAGACTATTTCCC 3451 | ||| || || | || | || | || ||||| ||| || | || | | Sbjct 4654 TCAACAACGGGGACAAAGC--CACAGCGCGCAGCAGCTTCTGCTGCCTCGGGTACATGCG 4711 Query 3452 CTCAGACATGCTGCGGACAGGAAATAACTTTGAATTCACTTACACGTTCGAGGACGTTCC 3511 | ||||||||||| || || |||| | |||| ||| ||| |||||||| || Sbjct 4712 GAGCCAGATGCTGCGGACCGGCAACAACTACGCCTTCATGTACCAGTTTGAGGACGTACC 4771 Query 3512 TTTCCATAGCATGTTTGCTCACAACCAGACGCTAGACCGGCTGATGAATCCTCTCGTCGA 3571 | || | |||| |||| ||||| || |||| |||||||| || || | || Sbjct 4772 CTCTCACTGGATGTACATGCACATCCAGAGCCTGGACCACCTGATGAAGCCGTTCATGGA 4831 Query 3572 TCAGTAC 3578 |||||| Sbjct 4832 CCAGTAC 4838 Score = 239 bits (264), Expect = 1e-59 Identities = 325/448 (73%), Gaps = 13/448 (3%) Strand=Plus/Plus Query 1198 TGGTGCCAGAAGAAATGGGGCAAGCGAAACACGCTGTGGCTGTTCGGACCTGCGACCACC 1257 ||||||| || || | ||| |||| ||| | | ||||| || ||||||||| |||| Sbjct 2546 TGGTGCCGGAGAAAGTCTGGCCAGCGGAACGCCGTCTGGCTCTTTGGACCTGCGCCCACG 2605 Query 1258 GGCAAGACCAACATCGCGGAGGCTATTGCCCATGCTGTGCCGTTCTATGGATGCGTTAAC 1317 || ||||||| | | |||| | ||| ||| ||||||||||| || ||||| |||| ||| Sbjct 2606 GGAAAGACCAGCGTTGCGGTGTCTACTGCGCATGCTGTGCCCTTTTATGGGCGCGTCAAC 2665 Query 1318 TGGACCAACGAGAACTTTCCGTTCAACGACTGCGTCGAAAAGATGATTATCTGGTGGGAA 1377 ||||||| |||||||||| | || | || || || || |||| | | || |||||||| Sbjct 2666 TGGACCAGCGAGAACTTT-CTCTCCATGATTGTGTGGACAAGACGGTGATTTGGTGGGAG 2724 Query 1378 GAGGGCAAAATGACCGCCAAGGTGGTGGAAACGGCTAAAGCGATTCTGGGAGGATCTCGG 1437 ||||||| ||| | ||||| || ||||| |||| | || || ||||| | ||||| Sbjct 2725 GAGGGCACGATGGCGGCCAAAGTCGTGGAGTCGGCCGAGGCCATCCTGGGGG---CTCGG 2781 Query 1438 --GTGAGAGTGGACCAAAAATGCAAAGCTTCGGTTCCGATCGAACCGACGCCGGTCATTA 1495 ||| |||||||||| |||||| |||| ||| | || ||||| || |||||||| | Sbjct 2782 CTGTGTGAGTGGACCAGAAATGC-AAGCCTCGCAGCAGACGGAACCCACACCGGTCATCA 2840 Query 1496 TTACCAGTAACACCAACATGTGTTATGTCATCGACGGGAACACGACTACGTTCGAGCATA 1555 | ||| ||||||||||||| | ||| ||||| ||| ||| || || || || Sbjct 2841 TCACCTCCAACACCAACATGTCCGTGGCCATTGACGGAAACTCGAAGACCTTTGAACACC 2900 Query 1556 AGCAGCCGTTGGAGGACAGGATGTTTAAGCTCGAGCTGTTGACT---CGTTTACCCGATG 1612 | |||||||| ||| | | ||||| ||| | || | ||||| ||||| | Sbjct 2901 AACAGCCGTTACAGGCCCGCATGTTCAAGTTTGAAC---TGACTTAGCGTTTGGTGCCAG 2957 Query 1613 ACTTTGGTAAGGTGACCAAACAGGAGGT 1640 ||||||| || ||||| || |||||||| Sbjct 2958 ACTTTGGGAAAGTGACTAAGCAGGAGGT 2985 Score = 82.4 bits (90), Expect = 2e-12 Identities = 118/164 (72%), Gaps = 3/164 (2%) Strand=Plus/Plus Query 2421 CCGGGTTACAAGTATCTAGGCCCTTTCAACGGTCTAGATAAAGGAAAACCCGTCAACGAG 2480 ||||| || || ||||| | || ||||||||||| ||||| ||| | | ||||| | Sbjct 3689 CCGGGATATAAATATCTCAGTCCCTTCAACGGTCTGGATAAGGGAGACCTGGTCAATCGG 3748 Query 2481 GCAGACGCTGCCGCCTTAGAGCACGACAAGGCTTACGACCTCGAACTCAAGGACGGGCAC 2540 |||||||| | ||| ||||||| | ||||| ||| | | ||| ||| || ||| Sbjct 3749 GCAGACGCCGTCGCTCTAGAGCATG--AAGGC-TACAGCGAGCAGCTCGAGGCGGGACAC 3805 Query 2541 AACCCGTACTTTGAGTACAACGAGGCCGATAGACGTTTCCAGGA 2584 ||||| | | | |||||||| | ||||| ||| |||||||| Sbjct 3806 AACCCCTCCCTCAAGTACAACCATGCCGACAGAGAGTTCCAGGA 3849 >seq99286 Length=7566 Score = 176 bits (194), Expect = 1e-40 Identities = 498/745 (67%), Gaps = 30/745 (4%) Strand=Plus/Plus Query 2862 ATGGCTGAAGGAGGTGGCGGTCCAATGGGCGATG-CAGGCCAAGGTGCCGACGGAGTGGG 2920 ||||||| |||| ||||| ||| ||| ||| || || | |||||| ||||||||| Sbjct 5647 ATGGCTGCAGGATGTGGCTCACCAGTGGACGACAACATGC-AGTGTGCCGCCGGAGTGGG 5705 Query 2921 CAATTCCTCGGGAAATTGGCATTGCGATTCCCAATGGCTGGACAACGGAGTCGTTACCCG 2980 | | ||| || |||||||| ||||| || ||| ||| || || |||| Sbjct 5706 CTCTGCCTGCGGTGATTGGCATGGCGATACCAGGTGGATGGGAGACCTCATCATTACAAA 5765 Query 2981 AACCACTCGAACCTGGGTCCTGCCCAGCTACAACAACCACTTGTACAAGCGGATC-CAAG 3039 |||| | ||| |||||||||||| || ||||||||| | |||| ||||| | | || Sbjct 5766 GTCCACCTGGACCGGGGTCCTGCCCACCTT-AACAACCACGTCTACAGGCGGACCACCAG 5824 Query 3040 GACCGGGAGGAACCGACCCCAACAATAAATTCTTTGGATTCAGCACCCCCTGGGGG---T 3096 || | | | | | |||||| | | |||||| | |||||||| | | | | Sbjct 5825 TTCCACCGGCATCAG-CAACAACAACACCTACTTTGGTTACAGCACCCGAGGAGAGCTGT 5883 Query 3097 ACTTTGACTACAACCGATTCCACTGCCACTTCTCCCCCCGAGACTGGCAACGACTCATCA 3156 ||||||||| ||||| ||| |||||| || ||||||||||||| | ||| ||| Sbjct 5884 ACTTTGACTTCAACC------ACTTCCACTTTTCATCCCGAGACTGGCAGCATCTCGTCA 5937 Query 3157 ACAACAACTGGGGCATCCGACCCAAAGCGATGCGCTTT-AGACTCTTTAACATCCAGGTT 3215 | ||||||||||| |||| ||| ||| || || ||| | | || | ||| | || Sbjct 5938 ATAACAACTGGGGTGTCCGGCCC-AAGTGACTCGGTTTCAAGTTATTCACCATATAAGTC 5996 Query 3216 AAAGAAGTC---ACTGTCCAAGACTCCAACACCACCATCGCCAACAACCTCACCAGCACG 3272 || || ||| || ||| ||| || | ||||||||||| ||||||||||||| Sbjct 5997 AAGGAGGTCACGACAGTC---GACAGCACAAAGACCATCGCCAATGACCTCACCAGCACC 6053 Query 3273 GTCCAAGTCTTTGCGG--ACAAGGACTACCAGCTGCCGTACGT-CCTCGGATCGGCTACA 3329 |||| || |||| || ||| ||||| | ||| |||| ||| || | | | | || Sbjct 6054 ATCCAGGTGTTTGTGGACACACGGACTGTCGGCTCCCGTCCGTGACTGGCAATGCCCACG 6113 Query 3330 GAGGGCACCTTCCCGCCGTTCCCAGCGGATATCTACACGATCCCGCAGTATGGTTACTGC 3389 |||| ||| ||| || || || || || ||| | ||| || || || || ||| Sbjct 6114 AAGGGTGCCTACCC-CCATTTCCGGCCTATGTCTTTATGATGCCTCAATACGGATACCTG 6172 Query 3390 ACGCTAAACTACAACAACGAGGCGGTGGATCGTTCGGCCTTCTACTGTCTAGACTATTTC 3449 || | ||| | || | || ||| | ||| ||| ||||| || | || Sbjct 6173 ACTTTCAACAATGGGCACAATGCCGTGCCCAGGAGCACCTACTATTGTCTGGAGTGCTTT 6232 Query 3450 CCCTCAGACATGCTGCGGACAGGAAATAACTTTGAATTCACTTACACGTTCGAGGACGTT 3509 ||| | | ||||| | ||||| || ||||||| || | ||| || ||||| || Sbjct 6233 CCCAGAAAAATGCTAAGAACAGGCAACAACTTTGCCTTTAGGTACGACTTTGAGGAGGTA 6292 Query 3510 CCTTTCCA-TAGCATGTTTGCTCACAACCAGA-CGCTAGACCGGCTGATGAATCCTCTCG 3567 ||||| || ||| |||| |||| ||||| | || |||||||||||||| || || Sbjct 6293 CCTTTTCAGTAG-ATGTACATACACAGCCAGAGCACT-GACCGGCTGATGAACCCGCTGT 6350 Query 3568 TCGATCAGTACCTGTGGGCTTTCAG 3592 | || ||||| ||||| | |||| Sbjct 6351 TGGACTAGTACTTGTGGACGCTCAG 6375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14844295477500