Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013- 09-15] 160,500 sequences; 1,926,439,238 total letters Query= NC_014468.1 Length=4286 Score E Sequences producing significant alignments: (Bits) Value seq86691 428 1e-116 seq99286 381 2e-102 >seq86691 Length=5340 Score = 428 bits (474), Expect = 1e-116 Identities = 511/693 (74%), Gaps = 29/693 (4%) Strand=Plus/Plus Query 2677 GGTGCCGATGGAGTGGGTAATGCCTCAGGAAATTGGCATTACGATTCCGTTTGGATGGAC 2736 |||||||||| ||||| | |||| |||||||||| || ||||||| ||||||| | Sbjct 4172 GGTGCCGATGCCGTGGGGAGCTCCTCGGGAAATTGGCGTTGCGATTCCAAATGGATGGGC 4231 Query 2737 GGCGCTGTCATCACCAAGTCCACCCGAACCTGGAGCCTGCCCGCCTACAACAACCACCTC 2796 | || |||||||||||||| | |||||| ||||||| ||||||| |||||| Sbjct 4232 AACCACGTGCTCACCAAGTCCACCGGGACCTGGGTCCTGCCCAGCTACAACCACCACCAG 4291 Query 2797 TACCGCCAGATCCAGTCCAGCGG---CACCGGAGACGGCACGTACTTTGGTTACAGCACG 2853 ||| | ||| | || ||| |||| | | | || | || | ||| || Sbjct 4292 TACAAGCGCATCGACTCACACGGAGCCACCAGCAATGACAATTTCTACAGCTACTCTACT 4351 Query 2854 CCTTGGGGATACTTCGATTTCAATCGATTCCACTGCCACTTTTCTCCCAGGGACTGGCAG 2913 |||||||||||||| || || || || ||||| | ||||||||| ||| | ||||||||| Sbjct 4352 CCTTGGGGATACTTTGACTTTAACCGCTTCCAGTACCACTTTTCACCCCGAGACTGGCAG 4411 Query 2914 CGGCTCATCAACAACCACTGGGGCATCCGCCCCAAGCGGCTCCACTTTAAGCTCTTCAAC 2973 | || |||||||| | ||||| ||||| |||||| | || ||| ||||| |||||| Sbjct 4412 GGCTTCGTCAACAACAATTGGGGTATCCGGCCCAAGAGACTTTCCTTCAAGCTGTTCAAC 4471 Query 2974 ATCCAGGTCAAGGAGGTCACGACGACCGACGGCACCACGACCATCGCCAACAACCTCACC 3033 ||||||| ||||||||||| ||| || || ||||||||||| |||| ||||||||| Sbjct 4472 GTCCAGGTTAAGGAGGTCACTACGCAGGAGGGAGCCACGACCATCACCAATAACCTCACC 4531 Query 3034 AGCACCATACAGGTCTTTGCGGACACGGAGTACCAGCTCCCGTACGTGCTCGGCAACGCC 3093 |||||||| ||||||||||||||| |||| | |||| ||||| ||||||| |||||||| Sbjct 4532 AGCACCATCCAGGTCTTTGCGGACGCGGACTGCCAGTTCCCGCACGTGCTAGGCAACGCG 4591 Query 3094 CACGAGGGCTGCCTGCCGCCGTTCCCGGCGGACGTCTTCATGCTGCCGCAGTACGCGTAC 3153 |||||||| ||||| || ||||| |||||||||| |||| |||||||| | Sbjct 4592 CACGAGGGAACGCTGCCTCCCTTCCC----GACGTCTTCACCGTGCCCCAGTACGCCGA- 4646 Query 3154 CTGACGCTCAACGCCAACCCCACGAACCAGGGCGCGGCCGCGCTCAGCCTGCCGCAGAGC 3213 ||| ||||||| ||| || | || | |||| || |||| Sbjct 4647 CTGCAGCTCAAC------------AACGGGGACAAAGC----CACAGCGCGCAGCAG--- 4687 Query 3214 GCCTTCTACTGCCTGGAGTACTTTCCGAGCCAGATGCTGAGGACCGGGAACAACTTCTCG 3273 ||||| |||||| | |||| | | ||||||||||||| ||||||| ||||||| | | Sbjct 4688 --CTTCTGCTGCCTCGGGTACATGCGGAGCCAGATGCTGCGGACCGGCAACAACTACGCC 4745 Query 3274 TTCAGCTACGAGTTCGAGAAGCTGCCCTTCCACTCGATGTTCATGCACAGCCAGAGCCTG 3333 |||| ||| |||| ||| | | |||| |||| ||||| |||||||| |||||||||| Sbjct 4746 TTCATGTACCAGTTTGAGGACGTACCCTCTCACTGGATGTACATGCACATCCAGAGCCTG 4805 Query 3334 GACCGGCTCATGAACCCGCTCATCGACCAGTAC 3366 |||| || ||||| ||| |||| ||||||||| Sbjct 4806 GACCACCTGATGAAGCCGTTCATGGACCAGTAC 4838 Score = 260 bits (288), Expect = 4e-66 Identities = 506/738 (69%), Gaps = 26/738 (4%) Strand=Plus/Plus Query 848 TACATGGCGCTCGTCAGGTGGCTCGTGGACAACGGCATCGCGACCGAGCGCGAGTGGATG 907 ||||||| |||||| | ||||| ||||| | |||||| || | ||| || | |||| Sbjct 2264 TACATGGAGCTCGTTAACTGGCTGGTGGAGATCGGCATTACGTCAGAGAGCAAC-GGATT 2322 Query 908 CGCGAGGACTCGGA--CGGGTACCTGAGCTACAACGCCACGGGCGCCACGCGCGCCCAGA 965 | ||| | ||| | ||| || |||||||| ||||||| | ||| || | Sbjct 2323 CAGGAGAAGCAGGAATCCTGTATCTCT--TACAACGCGACGGGCGATGCCCGCTTGCAAA 2380 Query 966 TCAAGGCCGCGCTCGACAACGCGGCCCGCATCATGGTCAACACGAAGACGGCCGCCGACT 1025 |||| | || || |||||||| | || ||| ||| | || | |||||| | ||| Sbjct 2381 ACAAGTCGGCTCTGGACAACGCCGGCCAAATCGTGGGCCTGACCACCACGGCCTCAGACG 2440 Query 1026 ACCTGGTCGGCAGGAACCCGCCCCTCGA---CGTGGAGGACAACAGGATCTACCGGCTGT 1082 || |||||| |||| || | | | | |||||| || | ||| | | | | Sbjct 2441 GCCGGGTCGGTT-----CCGCACCGCCAGAGCATCGAGGACGACCGCATCCGCTGCATCT 2495 Query 1083 TTCGCATGAACGGCTACGACCCCGCCTACGCGGGCAGCGTGCTGCTCGGCTGGTGCCGCA 1142 ||| | | |||||| || ||| |||||||| ||| |||| |||| | ||||||||| | Sbjct 2496 TTCACCTCCACGGCTGCGGCCCGGCCTACGCCGGCTCCGTGGTGCTGGCCTGGTGCCGGA 2555 Query 1143 CCGGCTTCGGCAAGCGCAACACCGTCTGGCTCTTCGGGCCGGCCACGACCGGCAAGACGA 1202 | ||| |||| ||| ||||||||||||| || || || | || || ||||| | Sbjct 2556 GAAAGTCTGGCCAGCGGAACGCCGTCTGGCTCTTTGGACCTGCGCCCACGGGAAAGACCA 2615 Query 1203 ACCTCGCCGAGGCCATCAGC-CACTCGGTGCCCTTCTACGGCTGCGTCAACTGGACCAAC 1261 | | || | | | | | || || | |||||||| || || ||||||||||||||| | Sbjct 2616 GCGTTGCGGTGTCTA-CTGCGCATGCTGTGCCCTTTTATGGGCGCGTCAACTGGACCAGC 2674 Query 1262 GAGAACTTCCCCTTCAACGACTGCGTGGACAAGATGATCATCTGGTGGGAGGAGGGCAAG 1321 |||||||| | || || || || |||||||||| | | || |||||||||||||||| | Sbjct 2675 GAGAACTTTCTCTCCAT-GATTGTGTGGACAAGACGGTGATTTGGTGGGAGGAGGGCACG 2733 Query 1322 ATGACGTCCAAGGTCGTCGAGAGCGCCAAGGCCATCCTCGGCGGCAGCAAGGTGCGCGTC 1381 ||| || |||| ||||| ||| ||| |||||||||| || ||| ||| | || Sbjct 2734 ATGGCGGCCAAAGTCGTGGAGTCGGCCGAGGCCATCCT-GGGGGCTCGGCTGTGTGAGTG 2792 Query 1382 GACCAGAAGTGCAAGAACTCGCAGCAGATCGAGCCCACGCCCGTCATNNNNNNNNNNNNN 1441 |||||||| |||||| ||||||||||| || ||||| || ||||| Sbjct 2793 GACCAGAAATGCAAG-CCTCGCAGCAGACGGAACCCACACCGGTCATCATCACCTCCAAC 2851 Query 1442 NNNNACATGTGCGAGGTCGTCGACGGGAACTCGACCACGTTCGAGCACCGGCAGCCGCTC 1501 |||||| || || | | ||||| ||||||| || || || |||| |||||| | Sbjct 2852 ACCAACATGTCCGTGGCCATTGACGGAAACTCGAAGACCTTTGAACACCAACAGCCGTTA 2911 Query 1502 GAGGACAGGATGTTCAAGTTCGAGCTCAC----CGTCAGGCTGCAGCCCACCTTCGGCAA 1557 ||| | | ||||||||||| || || || ||| || ||| | || || || || Sbjct 2912 CAGGCCCGCATGTTCAAGTTTGAACTGACTTAGCGTTTGG-TGC--CAGACTTTGGGAAA 2968 Query 1558 GATCACCAAGCAGGAGGT 1575 | | || ||||||||||| Sbjct 2969 G-TGACTAAGCAGGAGGT 2985 >seq99286 Length=7566 Score = 381 bits (422), Expect = 2e-102 Identities = 538/751 (72%), Gaps = 45/751 (6%) Strand=Plus/Plus Query 2636 TGGCTGCGGGTGGTGGCGGACCAGTGGGCGACGATGCACAAGGTGCCGATGGAGTGGGTA 2695 ||||||| || ||||| |||||||| |||| | || |||||| |||||||| Sbjct 5648 TGGCTGCAGGATGTGGCTCACCAGTGGACGACAACATGCAGTGTGCCGCCGGAGTGGGCT 5707 Query 2696 ATGCCTCAGGAAATTGGCATTACGATTCCGTTTGGATGGACGGCGCTGTCATCACCAAGT 2755 ||||| || |||||||| |||| || ||||||| | | |||| || |||| Sbjct 5708 CTGCCTGCGGTGATTGGCATGGCGATACCAGGTGGATGGGAGACCTCATCATTACAAAGT 5767 Query 2756 CCACCCGAACCTGGAGCCTGCCCGCCTACAACAACCACCTCTACCGCCAGATC--CAGT- 2812 ||||| | ||| || ||||||| ||| ||||||||| ||||| | | || | |||| Sbjct 5768 CCACCTGGACCGGGGTCCTGCCCACCTT-AACAACCACGTCTACAGGCGGACCACCAGTT 5826 Query 2813 CCAGCGGCACCGGAGACGGCA---CGTACTTTGGTTACAGCACGCCTTGGGGA----TAC 2865 ||| ||||| | | || || | ||||||||||||||||| || || || ||| Sbjct 5827 CCACCGGCATCAGCAACAACAACACCTACTTTGGTTACAGCAC-CCGAGGAGAGCTGTAC 5885 Query 2866 TTCGATTTCAATCGATTCCACTGCCACTTTTCTCCCAGGGACTGGCAGCGGCTCATCAAC 2925 || || ||||| ||||| ||||||||| || | |||||||||| ||| |||| Sbjct 5886 TTTGACTTCAA------CCACTTCCACTTTTCATCCCGAGACTGGCAGCATCTCGTCAAT 5939 Query 2926 AACCACTGGGGCATCCGCCCCAAGCGGCTCCACTTTAAGCTCTTCAACATCCAGGTCAAG 2985 ||| ||||||| |||| |||||| | ||| || ||| | |||| ||| | |||||| Sbjct 5940 AACAACTGGGGTGTCCGGCCCAAGTGACTCGGTTTCAAGTTATTCACCATATAAGTCAAG 5999 Query 2986 GAGGTCACGACGACCGACGGCACCACGACCATCGCCAACAACCTCACCAGCACCATACAG 3045 ||||||||||| |||| |||| | |||||||||||| |||||||||||||||| ||| Sbjct 6000 GAGGTCACGACAGTCGACAGCACAAAGACCATCGCCAATGACCTCACCAGCACCATCCAG 6059 Query 3046 GTCTTTGCGG--ACACGGAGTACCAGCTCCCGTACGTGCTCGGCAACGCCCACGAGGGCT 3103 || |||| || ||||||| | | |||||||| |||| ||||| |||||||| || | Sbjct 6060 GTGTTTGTGGACACACGGACTGTCGGCTCCCGTCCGTGACTGGCAATGCCCACGAAGGGT 6119 Query 3104 GCCTGCCGCCGTTCCCGGCGGACGTCTTCATGCTGCCGCAGTACGCGTACCTGACGCTCA 3163 |||| || || || ||||| | ||||| ||| |||| || |||| |||||||| ||| Sbjct 6120 GCCTACCCCCATTTCCGGCCTATGTCTTTATGATGCCTCAATACGGATACCTGACTTTCA 6179 Query 3164 ACGCCAACCCCACGAACCAGGGCGC--GGCCGCGCTCAGCCTGCCGCAGAGCGCCTTCTA 3221 | ||| |||| | |||| || ||| |||| ||| ||| Sbjct 6180 A---CAA-----------TGGGCACAATGCCGTGCCCAG---------GAGCACCTACTA 6216 Query 3222 CTGCCTGGAGTACTTTCCGAGCCAGATGCTGAGGACCGGGAACAACTTCTCGTTCAGCTA 3281 || ||||||| |||||| || | ||||| || || || |||||||| | || || || Sbjct 6217 TTGTCTGGAGTGCTTTCCCAGAAAAATGCTAAGAACAGGCAACAACTTTGCCTTTAGGTA 6276 Query 3282 CGAGTTCGAGAAGCTGCCCTTCCACTCGATGTTCATGCACAGCCAGAGCCTGGACCGGCT 3341 ||| || ||| || | || || || | ||||| ||| |||||||||||| |||||||| Sbjct 6277 CGACTTTGAGGAGGTACCTTTTCAGTAGATGTACATACACAGCCAGAGCACTGACCGGCT 6336 Query 3342 CATGAACCCGCTCATCGACCAGTACCTCTGG 3372 ||||||||||| | ||| ||||| | ||| Sbjct 6337 GATGAACCCGCTGTTGGACTAGTACTTGTGG 6367 Score = 183 bits (202), Expect = 8e-43 Identities = 226/309 (73%), Gaps = 0/309 (0%) Strand=Plus/Plus Query 3829 CCGGGCATGGTCTGGCAGGACCGCGACATCTACCTGCAGGGCCCGATATGGGCCAAGATC 3888 || |||||| |||||| || | ||||||||||| ||||||| ||| ||||||||| | Sbjct 6810 CCTGGCATGAATTGGCAGAACTGAGACATCTACCTCCAGGGCCTGATCTGGGCCAAGGTT 6869 Query 3889 CCGGAGACGGACGGCCACTTCCACCCGTCCCCGCTCATGGGCGGCTTCGGGCTCAAGAAC 3948 || | || ||||| ||||| | | ||| || |||||||| || || || |||||||| Sbjct 6870 CCACACACTGACGGACACTTTTATCTGTCTCCTCTCATGGGGGGATTTGGTCTCAAGAAG 6929 Query 3949 CCGCCGCCGCAGATCCTCGTCAAGAACACGCCCGTGCCCGCCGTGCCGCCCACGACCTTC 4008 || || || |||||||| ||||||||||| || || | |||| || || | ||| Sbjct 6930 CCCCCTCCTCAGATCCTGGTCAAGAACACCCCGGTTACTGCCGACCCTCCAGTGGAATTC 6989 Query 4009 ACACCGCAGAAGGTCAACTCCTTCATCACGCAGTACTCCACCGGCCAGGTCACCGTCGAG 4068 ||| | ||| ||||| ||||||||| || || ||| || || || ||||| || Sbjct 6990 ACAAGTGACAAGCTCAACAGCTTCATCACTCAATATAGCACTGGACAAGTAACCGTGGAA 7049 Query 4069 ATCGAGTGGGAGCTGCGCAAGGAGAAGAGCAAGCGCTGGAACCCCGAGATCCAGTACACC 4128 || | |||||||||| |||| | |||| | |||||||| || || || ||||| Sbjct 7050 ATTAAATGGGAGCTGCAGCTGGAGGACTCCAAGAGGTGGAACCCAGAAATTCAATACACT 7109 Query 4129 TCCAACTTC 4137 ||||||||| Sbjct 7110 TCCAACTTC 7118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 13579320007500