Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013- 09-15] 160,500 sequences; 1,926,439,238 total letters Query= NC_027429.1 Length=4590 Score E Sequences producing significant alignments: (Bits) Value seq86691 230 7e-57 seq99286 165 2e-37 >seq86691 Length=5340 Score = 230 bits (254), Expect = 7e-57 Identities = 348/492 (71%), Gaps = 15/492 (3%) Strand=Plus/Plus Query 2707 GGCGCCGAGGGAGTGGGTAATGCCTCGGGAGATTGGCATTGCGATACCCAATGGCTGGGC 2766 || ||||| | ||||| | |||||||| |||||| ||||||| || ||||| ||||| Sbjct 4172 GGTGCCGATGCCGTGGGGAGCTCCTCGGGAAATTGGCGTTGCGATTCCAAATGGATGGGC 4231 Query 2767 GACCACGTCATTACAAAATCTACCAGAACTTGGGTTCTGCCCTCTTACGGGAATCATCTC 2826 ||||||| | || || || ||| | || ||||| |||||| ||| | || | Sbjct 4232 AACCACGTGCTCACCAAGTCCACCGGGACCTGGGTCCTGCCCAGCTACAACCACCACCAG 4291 Query 2827 TACTCGCCCATCAACTTTGATGGAACCACAGGGAACGGAACCCAAGCCGCTTACTGCGGA 2886 ||| || |||| ||| | ||| |||| | || | ||| || || | | Sbjct 4292 TACAAGCGCATCGACTCACACGGAGCCACCAGCAATGA----CAA-----TTTCTACAGC 4342 Query 2887 TACGCTACCCCCTGGGCCTACTTTGACTTTAACCGATTCCACTGCCACTTTTCCCCCCGA 2946 ||| |||| || |||| ||||||||||||||||| ||||| | ||||||||| |||||| Sbjct 4343 TACTCTACTCCTTGGGGATACTTTGACTTTAACCGCTTCCAGTACCACTTTTCACCCCGA 4402 Query 2947 GACTGGCAAAGACTCATTAACAACCATACCGGAATACGACCAGTCGGACTCAAATTCAAG 3006 |||||||| | || | |||||| || || || || || |||| |||||| Sbjct 4403 GACTGGCAGGGCTTCGTCAACAACAATTGGGGTATCCGGCCCAAGAGACTTTCCTTCAAG 4462 Query 3007 CTGTTCAACATCCAGGTCAAGGAAATCACAGTACAAGATTCGACCAAAACGATCGCCAAC 3066 ||||||||| ||||||| ||||| |||| || || ||| || ||| |||| Sbjct 4463 CTGTTCAACGTCCAGGTTAAGGAGGTCACTACGCAGGAGGGAGCCACGACCATCACCAAT 4522 Query 3067 AATCTCACCAGCACCGTACAGGTCTTTGCGGACACGGAGCACCAGCTCCCGTACGTATTA 3126 || |||||||||||| | ||||||||||||||| |||| |||| ||||| |||| || Sbjct 4523 AACCTCACCAGCACCATCCAGGTCTTTGCGGACGCGGACTGCCAGTTCCCGCACGTGCTA 4582 Query 3127 GGAAATGC-CACGCAGGGCACGTTTCCTCCCTTTCCGGCTGAAGTCTTTCAGTTGCCTCA 3185 || || || |||| |||| ||| | |||||||| || || ||||| |||| || Sbjct 4583 GGCAACGCGCACG-AGGGAACGCTGCCTCCCTTCCC----GACGTCTTCACCGTGCCCCA 4637 Query 3186 GTACGGCTACTG 3197 ||||| | |||| Sbjct 4638 GTACGCCGACTG 4649 Score = 89.7 bits (98), Expect = 1e-14 Identities = 116/160 (73%), Gaps = 3/160 (2%) Strand=Plus/Plus Query 2217 TCTAGTGGTTCCAGGTTATAAATACCTCGGTCCATTCAACGGATTAGACAAGGGCGAGCC 2276 ||| || |||| || |||||||| ||| |||| |||||||| | || ||||| || | Sbjct 3679 TCTGGTCCTTCCGGGATATAAATATCTCAGTCCCTTCAACGGTCTGGATAAGGGAGACCT 3738 Query 2277 TGTCAACGCAGCTGACGCGGCTGCCCTTGAACACGACAAAGCTTATAACGAGCTTCTCGA 2336 ||||| || ||||| | || || || || || || || | ||||| ||||| Sbjct 3739 GGTCAATCGGGCAGACGCCGTCGCTCTAGAGCATGA---AGGCTACAGCGAGCAGCTCGA 3795 Query 2337 GGCTGGAGACAACCCGTACATCAAGTACAACCACGCGGAC 2376 ||| ||| ||||||| | | ||||||||||||| || ||| Sbjct 3796 GGCGGGACACAACCCCTCCCTCAAGTACAACCATGCCGAC 3835 >seq99286 Length=7566 Score = 165 bits (182), Expect = 2e-37 Identities = 452/682 (66%), Gaps = 33/682 (5%) Strand=Plus/Plus Query 2659 AATACAATGGCTCAAGGAGGTGGCGGACCAATGGCAGACGATAACCAAGGCGCCGAGGGA 2718 |||||||||||| |||| ||||| |||| ||| ||| | | || | |||| ||| Sbjct 5641 AATACAATGGCTGCAGGATGTGGCTCACCAGTGGACGACAACATGCAGTGTGCCGCCGGA 5700 Query 2719 GTGGGTAATGCCTCGGGAGATTGGCATTGCGATACCCAATGGCTGGGCGACCACGTCATT 2778 ||||| ||||| || ||||||||| |||||||| ||| |||| |||| | ||||| Sbjct 5701 GTGGGCTCTGCCTGCGGTGATTGGCATGGCGATACCAGGTGGATGGGAGACCTCATCATT 5760 Query 2779 ACAAAATCTACCAGAACTTGGGTTCTGCCCTC-TTACGGGAATCATCTCTACTCGCCCAT 2837 ||||| || ||| | || |||| |||||| | ||| || || ||||| || | Sbjct 5761 ACAAAGTCCACCTGGACCGGGGTCCTGCCCACCTTAAC--AACCACGTCTACAGGCGGAC 5818 Query 2838 CAACTTTGATGGAACCACAGGGAACGGAACCCAAGCCGCTTACTGCGGATACGCTACCCC 2897 || | | |||| || | | | | | | | | |||| || ||| |||| Sbjct 5819 CACCAGTT------CCACCGGCATCAGCAACAACAACACCTACTTTGGTTACAGCACCCG 5872 Query 2898 CTGGGCC---TACTTTGACTTTAACCGATTCCACTGCCACTTTTCCCCCCGAGACTGGCA 2954 | | ||||||||||| |||| ||| ||||||||| ||||||||||||| Sbjct 5873 AGGAGAGCTGTACTTTGACTTCAACC------ACTTCCACTTTTCATCCCGAGACTGGCA 5926 Query 2955 AAGACTCATTAACAACCATACCGGAATACGACC--AGTCGGACTCAAATTCAAGCTGTTC 3012 ||| | || ||| | || | || || ||| ||||| |||||| | ||| Sbjct 5927 GCATCTCGTCAATAACAACTGGGGTGTCCGGCCCAAGT--GACTCGGTTTCAAGTTATTC 5984 Query 3013 AACATCCAGGTCAAGGAAATCACAGTACAAGATTCGACCAAAACGATCGCCAACAATCTC 3072 | ||| | |||||||| |||| | || || || || |||||||| | ||| Sbjct 5985 ACCATATAAGTCAAGGAGGTCACGACAGTCGACAGCACAAAGACCATCGCCAATGACCTC 6044 Query 3073 ACCAGCACCGTACAGGTCTTTGCGG--ACACGGAGCACCAGCTCCCGTACGTATTAGGAA 3130 ||||||||| | ||||| |||| || ||||||| | |||||||| ||| || | Sbjct 6045 ACCAGCACCATCCAGGTGTTTGTGGACACACGGACTGTCGGCTCCCGTCCGTGACTGGCA 6104 Query 3131 ATG-CCACGCAGGGCACGTTTCCTCCCTTTCCGGCTGAAGTCTTTCAGTTGCCTCAGTAC 3189 ||| ||||| |||| | | || || |||||||| | |||||| | ||||||| ||| Sbjct 6105 ATGCCCACGAAGGGTGC-CTACCCCCATTTCCGGCCTATGTCTTTATGATGCCTCAATAC 6163 Query 3190 GGCTACTGTACCATC--CAAGGCCCTCAGGGTAAGTTTACCGACAGAAGTGCCTTCTACT 3247 || ||| || || ||| | | || | | || ||| || ||| ||| | Sbjct 6164 GGATACCTGACTTTCAACAATGGGCACAATG---CCGTGCC--CAGGAGCACCTACTATT 6218 Query 3248 GCTTGGAGTACTTTCCTTCCAAGATGCTGAGAACGGGGAATAACTTTGAATTTACTTACA 3307 | |||||| |||||| || ||||| ||||| || || ||||||| |||| ||| Sbjct 6219 GTCTGGAGTGCTTTCCCAGAAAAATGCTAAGAACAGGCAACAACTTTGCCTTTAGGTACG 6278 Query 3308 AGTTCGAGAAGGTTCCCTTCCA 3329 | || ||| |||| || || || Sbjct 6279 ACTTTGAGGAGGTACCTTTTCA 6300 Score = 122 bits (134), Expect = 3e-24 Identities = 203/291 (70%), Gaps = 2/291 (1%) Strand=Plus/Plus Query 3880 AACAGAGATATTTACCTGCAAGGTCCCATCTGGGCTAAAATACCCGATACCGATGGACAC 3939 ||| |||| || ||||| || || | |||||||| || | || | || || |||||| Sbjct 6828 AACTGAGACATCTACCTCCAGGGCCTGATCTGGGCCAAGGTTCCACACACTGACGGACAC 6887 Query 3940 TTTCACCCGTCTCCACAAATGGGTGGTTTCGGACTTAAAAACCCACCACCGATGATCCTC 3999 ||| | | |||||| | ||||| || || || || || || || || || |||||| Sbjct 6888 TTTTATCTGTCTCCTCTCATGGGGGGATTTGGTCTCAAGAAGCCCCCTCCTCAGATCCTG 6947 Query 4000 ATCAAAAACACACCCGTTCCCGCCGATCCACCAACGACCTTCA-AACCGACTCCGATGAA 4058 |||| ||||| || ||| | ||||| || ||| | |||| || ||| | | || Sbjct 6948 GTCAAGAACACCCCGGTTACTGCCGACCCTCCAGTGGAATTCACAAGTGACAA-GCTCAA 7006 Query 4059 CAGCTTCATCAGCGAATACAGTACCGGTCAGGTGACTGTAGAGATGCTGTGGGAGGTCCG 4118 ||||||||||| |||| || || || || || || || || || |||||| | | Sbjct 7007 CAGCTTCATCACTCAATATAGCACTGGACAAGTAACCGTGGAAATTAAATGGGAGCTGCA 7066 Query 4119 GAAAGAAGACTCCAAGAGATGGAACCCGGAAATCCAGTTTACCTCCAATTT 4169 | || ||||||||||| |||||||| ||||| || | || ||||| || Sbjct 7067 GCTGGAGGACTCCAAGAGGTGGAACCCAGAAATTCAATACACTTCCAACTT 7117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14550412287500