Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013-
09-15] 160,500 sequences; 1,926,439,238 total letters
Query= NC_027429.1
Length=4590
Score E
Sequences producing significant alignments: (Bits) Value
seq86691 230 7e-57
seq99286 165 2e-37
>seq86691
Length=5340
Score = 230 bits (254), Expect = 7e-57
Identities = 348/492 (71%), Gaps = 15/492 (3%)
Strand=Plus/Plus
Query 2707 GGCGCCGAGGGAGTGGGTAATGCCTCGGGAGATTGGCATTGCGATACCCAATGGCTGGGC 2766
|| ||||| | ||||| | |||||||| |||||| ||||||| || ||||| |||||
Sbjct 4172 GGTGCCGATGCCGTGGGGAGCTCCTCGGGAAATTGGCGTTGCGATTCCAAATGGATGGGC 4231
Query 2767 GACCACGTCATTACAAAATCTACCAGAACTTGGGTTCTGCCCTCTTACGGGAATCATCTC 2826
||||||| | || || || ||| | || ||||| |||||| ||| | || |
Sbjct 4232 AACCACGTGCTCACCAAGTCCACCGGGACCTGGGTCCTGCCCAGCTACAACCACCACCAG 4291
Query 2827 TACTCGCCCATCAACTTTGATGGAACCACAGGGAACGGAACCCAAGCCGCTTACTGCGGA 2886
||| || |||| ||| | ||| |||| | || | ||| || || | |
Sbjct 4292 TACAAGCGCATCGACTCACACGGAGCCACCAGCAATGA----CAA-----TTTCTACAGC 4342
Query 2887 TACGCTACCCCCTGGGCCTACTTTGACTTTAACCGATTCCACTGCCACTTTTCCCCCCGA 2946
||| |||| || |||| ||||||||||||||||| ||||| | ||||||||| ||||||
Sbjct 4343 TACTCTACTCCTTGGGGATACTTTGACTTTAACCGCTTCCAGTACCACTTTTCACCCCGA 4402
Query 2947 GACTGGCAAAGACTCATTAACAACCATACCGGAATACGACCAGTCGGACTCAAATTCAAG 3006
|||||||| | || | |||||| || || || || || |||| ||||||
Sbjct 4403 GACTGGCAGGGCTTCGTCAACAACAATTGGGGTATCCGGCCCAAGAGACTTTCCTTCAAG 4462
Query 3007 CTGTTCAACATCCAGGTCAAGGAAATCACAGTACAAGATTCGACCAAAACGATCGCCAAC 3066
||||||||| ||||||| ||||| |||| || || ||| || ||| ||||
Sbjct 4463 CTGTTCAACGTCCAGGTTAAGGAGGTCACTACGCAGGAGGGAGCCACGACCATCACCAAT 4522
Query 3067 AATCTCACCAGCACCGTACAGGTCTTTGCGGACACGGAGCACCAGCTCCCGTACGTATTA 3126
|| |||||||||||| | ||||||||||||||| |||| |||| ||||| |||| ||
Sbjct 4523 AACCTCACCAGCACCATCCAGGTCTTTGCGGACGCGGACTGCCAGTTCCCGCACGTGCTA 4582
Query 3127 GGAAATGC-CACGCAGGGCACGTTTCCTCCCTTTCCGGCTGAAGTCTTTCAGTTGCCTCA 3185
|| || || |||| |||| ||| | |||||||| || || ||||| |||| ||
Sbjct 4583 GGCAACGCGCACG-AGGGAACGCTGCCTCCCTTCCC----GACGTCTTCACCGTGCCCCA 4637
Query 3186 GTACGGCTACTG 3197
||||| | ||||
Sbjct 4638 GTACGCCGACTG 4649
Score = 89.7 bits (98), Expect = 1e-14
Identities = 116/160 (73%), Gaps = 3/160 (2%)
Strand=Plus/Plus
Query 2217 TCTAGTGGTTCCAGGTTATAAATACCTCGGTCCATTCAACGGATTAGACAAGGGCGAGCC 2276
||| || |||| || |||||||| ||| |||| |||||||| | || ||||| || |
Sbjct 3679 TCTGGTCCTTCCGGGATATAAATATCTCAGTCCCTTCAACGGTCTGGATAAGGGAGACCT 3738
Query 2277 TGTCAACGCAGCTGACGCGGCTGCCCTTGAACACGACAAAGCTTATAACGAGCTTCTCGA 2336
||||| || ||||| | || || || || || || || | ||||| |||||
Sbjct 3739 GGTCAATCGGGCAGACGCCGTCGCTCTAGAGCATGA---AGGCTACAGCGAGCAGCTCGA 3795
Query 2337 GGCTGGAGACAACCCGTACATCAAGTACAACCACGCGGAC 2376
||| ||| ||||||| | | ||||||||||||| || |||
Sbjct 3796 GGCGGGACACAACCCCTCCCTCAAGTACAACCATGCCGAC 3835
>seq99286
Length=7566
Score = 165 bits (182), Expect = 2e-37
Identities = 452/682 (66%), Gaps = 33/682 (5%)
Strand=Plus/Plus
Query 2659 AATACAATGGCTCAAGGAGGTGGCGGACCAATGGCAGACGATAACCAAGGCGCCGAGGGA 2718
|||||||||||| |||| ||||| |||| ||| ||| | | || | |||| |||
Sbjct 5641 AATACAATGGCTGCAGGATGTGGCTCACCAGTGGACGACAACATGCAGTGTGCCGCCGGA 5700
Query 2719 GTGGGTAATGCCTCGGGAGATTGGCATTGCGATACCCAATGGCTGGGCGACCACGTCATT 2778
||||| ||||| || ||||||||| |||||||| ||| |||| |||| | |||||
Sbjct 5701 GTGGGCTCTGCCTGCGGTGATTGGCATGGCGATACCAGGTGGATGGGAGACCTCATCATT 5760
Query 2779 ACAAAATCTACCAGAACTTGGGTTCTGCCCTC-TTACGGGAATCATCTCTACTCGCCCAT 2837
||||| || ||| | || |||| |||||| | ||| || || ||||| || |
Sbjct 5761 ACAAAGTCCACCTGGACCGGGGTCCTGCCCACCTTAAC--AACCACGTCTACAGGCGGAC 5818
Query 2838 CAACTTTGATGGAACCACAGGGAACGGAACCCAAGCCGCTTACTGCGGATACGCTACCCC 2897
|| | | |||| || | | | | | | | | |||| || ||| ||||
Sbjct 5819 CACCAGTT------CCACCGGCATCAGCAACAACAACACCTACTTTGGTTACAGCACCCG 5872
Query 2898 CTGGGCC---TACTTTGACTTTAACCGATTCCACTGCCACTTTTCCCCCCGAGACTGGCA 2954
| | ||||||||||| |||| ||| ||||||||| |||||||||||||
Sbjct 5873 AGGAGAGCTGTACTTTGACTTCAACC------ACTTCCACTTTTCATCCCGAGACTGGCA 5926
Query 2955 AAGACTCATTAACAACCATACCGGAATACGACC--AGTCGGACTCAAATTCAAGCTGTTC 3012
||| | || ||| | || | || || ||| ||||| |||||| | |||
Sbjct 5927 GCATCTCGTCAATAACAACTGGGGTGTCCGGCCCAAGT--GACTCGGTTTCAAGTTATTC 5984
Query 3013 AACATCCAGGTCAAGGAAATCACAGTACAAGATTCGACCAAAACGATCGCCAACAATCTC 3072
| ||| | |||||||| |||| | || || || || |||||||| | |||
Sbjct 5985 ACCATATAAGTCAAGGAGGTCACGACAGTCGACAGCACAAAGACCATCGCCAATGACCTC 6044
Query 3073 ACCAGCACCGTACAGGTCTTTGCGG--ACACGGAGCACCAGCTCCCGTACGTATTAGGAA 3130
||||||||| | ||||| |||| || ||||||| | |||||||| ||| || |
Sbjct 6045 ACCAGCACCATCCAGGTGTTTGTGGACACACGGACTGTCGGCTCCCGTCCGTGACTGGCA 6104
Query 3131 ATG-CCACGCAGGGCACGTTTCCTCCCTTTCCGGCTGAAGTCTTTCAGTTGCCTCAGTAC 3189
||| ||||| |||| | | || || |||||||| | |||||| | ||||||| |||
Sbjct 6105 ATGCCCACGAAGGGTGC-CTACCCCCATTTCCGGCCTATGTCTTTATGATGCCTCAATAC 6163
Query 3190 GGCTACTGTACCATC--CAAGGCCCTCAGGGTAAGTTTACCGACAGAAGTGCCTTCTACT 3247
|| ||| || || ||| | | || | | || ||| || ||| ||| |
Sbjct 6164 GGATACCTGACTTTCAACAATGGGCACAATG---CCGTGCC--CAGGAGCACCTACTATT 6218
Query 3248 GCTTGGAGTACTTTCCTTCCAAGATGCTGAGAACGGGGAATAACTTTGAATTTACTTACA 3307
| |||||| |||||| || ||||| ||||| || || ||||||| |||| |||
Sbjct 6219 GTCTGGAGTGCTTTCCCAGAAAAATGCTAAGAACAGGCAACAACTTTGCCTTTAGGTACG 6278
Query 3308 AGTTCGAGAAGGTTCCCTTCCA 3329
| || ||| |||| || || ||
Sbjct 6279 ACTTTGAGGAGGTACCTTTTCA 6300
Score = 122 bits (134), Expect = 3e-24
Identities = 203/291 (70%), Gaps = 2/291 (1%)
Strand=Plus/Plus
Query 3880 AACAGAGATATTTACCTGCAAGGTCCCATCTGGGCTAAAATACCCGATACCGATGGACAC 3939
||| |||| || ||||| || || | |||||||| || | || | || || ||||||
Sbjct 6828 AACTGAGACATCTACCTCCAGGGCCTGATCTGGGCCAAGGTTCCACACACTGACGGACAC 6887
Query 3940 TTTCACCCGTCTCCACAAATGGGTGGTTTCGGACTTAAAAACCCACCACCGATGATCCTC 3999
||| | | |||||| | ||||| || || || || || || || || || ||||||
Sbjct 6888 TTTTATCTGTCTCCTCTCATGGGGGGATTTGGTCTCAAGAAGCCCCCTCCTCAGATCCTG 6947
Query 4000 ATCAAAAACACACCCGTTCCCGCCGATCCACCAACGACCTTCA-AACCGACTCCGATGAA 4058
|||| ||||| || ||| | ||||| || ||| | |||| || ||| | | ||
Sbjct 6948 GTCAAGAACACCCCGGTTACTGCCGACCCTCCAGTGGAATTCACAAGTGACAA-GCTCAA 7006
Query 4059 CAGCTTCATCAGCGAATACAGTACCGGTCAGGTGACTGTAGAGATGCTGTGGGAGGTCCG 4118
||||||||||| |||| || || || || || || || || || |||||| | |
Sbjct 7007 CAGCTTCATCACTCAATATAGCACTGGACAAGTAACCGTGGAAATTAAATGGGAGCTGCA 7066
Query 4119 GAAAGAAGACTCCAAGAGATGGAACCCGGAAATCCAGTTTACCTCCAATTT 4169
| || ||||||||||| |||||||| ||||| || | || ||||| ||
Sbjct 7067 GCTGGAGGACTCCAAGAGGTGGAACCCAGAAATTCAATACACTTCCAACTT 7117
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 14550412287500
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |