Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= NC_001701.1 Length=5106 Score E Sequences producing significant alignments: (Bits) Value seq615 181 3e-42 seq875 172 2e-39 seq429 87.8 6e-14 >seq615 Length=480679 Score = 181 bits (200), Expect = 3e-42 Identities = 191/250 (76%), Gaps = 1/250 (0%) Strand=Plus/Plus Query 1510 AGTTCAACAAAAGAAACGCCATATGGCTCTACGGACCTGCCACCACCGGGAAGACCAACA 1569 ||||| ||| || |||||||| ||||||| ||||||| |||||||| |||||||||| Sbjct 3944 AGTTCGGCAAGAGGAACGCCATCTGGCTCTTTGGACCTGTGACCACCGGCAAGACCAACA 4003 Query 1570 TTGCAGAAGCTATTGCCCATGCTGTACCCTTCTATGGCTGTGTTAACTGGACTAATGAGA 1629 |||| || |||||||||||||| || |||||||||||||| || | |||||| ||||||| Sbjct 4004 TTGCGGAGGCTATTGCCCATGCCGTGCCCTTCTATGGCTGCGTCAGCTGGACCAATGAGA 4063 Query 1630 ACTTTCCTTTTAATGATTGTGTTGATAAAATGCTGATTTGGTGGGAGGAGGGAAAAATGA 1689 | ||||| |||| || || | || || ||| |||| ||||||||||| | || |||| Sbjct 4064 ATTTTCC-CTTAACGACTGCATGGACAAGATGGTGATCCGGTGGGAGGAGTGCAAGATGA 4122 Query 1690 CTAATAAGGTTGTTGAATCTGCAAAAGCAATTTTGGGAGGGTCTGCTGTCCGGGTAGACC 1749 | ||||| || || || || || || || || || ||| | || | || ||| Sbjct 4123 CGGCCAAGGTCGTGGAGTCAGCCAAGGCCATCCGAGGGGGCTCTACGGTGCAAGTCAACC 4182 Query 1750 AGAAATGTAA 1759 ||||||| || Sbjct 4183 AGAAATGCAA 4192 Score = 123 bits (136), Expect = 8e-25 Identities = 263/385 (68%), Gaps = 11/385 (3%) Strand=Plus/Plus Query 3073 GGGGTGCCGATGGAGTGGGTAATGCCTCGGGAAATTGGCATTGCGATTCCCAATGGATGG 3132 || || |||| |||||||| ||||| | |||||||| | ||| || |||||||| Sbjct 5617 GGTGTTCCGACGGAGTGGGCTCTGCCTGCAGTGATTGGCATGGAGATACCACATGGATGG 5676 Query 3133 GAAACACAGTCATCACAAAGACCACCAGAACCTGGGTCCTGCCAAGCTACAACAACCACA 3192 || || ||||| |||||| |||| | || || ||||||| | |||||||||||||| Sbjct 5677 GAGACCGTGTCATTACAAAGTCCACACGGACAGGGATCCTGCCCACCTACAACAACCACA 5736 Query 3193 TCTACAAAGCAATTACCAGCGGAACCTCTCAAGATGCAAATGTCCAGTATGCAGGATACA 3252 |||||| || |||||| ||| || | |||| | | | | | Sbjct 5737 TCTACAGGCGGATCACCAGCTCCACCGG-CATCA-GCAA----CGACAACACCTACTTTG 5790 Query 3253 GTACCCCCTGGGGGTACTTTGATTTCAACCGCTTCCACTGCCACTTCTCCCCTAGAGACT 3312 || | || | || ||||| ||||||||||||||||||||||| | || |||||| Sbjct 5791 GTTAGGCGTGCTG-TATTTTGACTTCAACCGCTTCCACTGCCACTTTTTACCCCGAGACT 5849 Query 3313 GGCAGAGACTTATCAACAACCATTGGGGAATCAGACCCAAGTCTCTTAAATTCAAGATCT 3372 || || | || |||| ||| ||||| ||| | || ||| || |||||| | | Sbjct 5850 GGAAGCGTCTCGTCAATAACAGCTGGGGTATCCGGCCTAAGCAACTCGGTTTCAAGTTAT 5909 Query 3373 TCAATGTCCAAGTCAAAGAAGTCACAACGCAG-GATCAG-ACAAAGACCATTGCAAACAA 3430 ||| | |||||||| || ||||| | ||| | ||| ||||||||||| || || || Sbjct 5910 TCACCATACAAGTCAAGGAGGTCACGA--CAGTCAACAGCACAAAGACCATCGCCAATAA 5967 Query 3431 TCTCACCTCAACAATTCAAGTCTTT 3455 |||||| || || || || ||| Sbjct 5968 CCTCACCAGCACCATCCAGGTGTTT 5992 >seq875 Length=186252 Score = 172 bits (190), Expect = 2e-39 Identities = 421/628 (67%), Gaps = 20/628 (3%) Strand=Plus/Minus Query 3073 GGGGTGCCGATGGAGTGGGTAATGCCTCGGGAAATTGGCATTGCGATTCCCAATGGATGG 3132 |||||| ||||| |||||| | ||||||||||||||| |||| ||||| ||||||||| Sbjct 116365 GGGGTGACGATGCAGTGGGGAGCTCCTCGGGAAATTGGCGTTGCAATTCCAAATGGATGG 116306 Query 3133 GAAACACAGTCATCACAAAGACCACCAGAACCTGGGTCCTGCCAAGCTACAACAACCACA 3192 | ||| || |||| || || || | |||||||||||||| | ||||||| ||||| Sbjct 116305 GCAACCACGTGCTCACCGAGTCCGCCGGGACCTGGGTCCTGCCCA-CTACAACCACCACC 116247 Query 3193 TCTACAA-AGCAATTAC-CAGCGGAACCTCTCAAGATGCA-AATGTCCAGTATGCAGGAT 3249 ||||| ||| || || || | | || | | | ||| || | || | | Sbjct 116246 AGTACAAGCGCATCGACTCAAAGGGAGCCACCAGCAAGGACAATTTC-----TACA-GCT 116193 Query 3250 ACAGTACCCCCTGGGGGTACTTTGATTTCAACCGCTTCCACTGCCACTTCTCCCCTAGAG 3309 || ||| || ||||| |||||||| || || |||||||| | | |||| || || ||| Sbjct 116192 ACTCTACTCCGTGGGGATACTTTGACTTTAA-CGCTTCCAGTACTACTTTTCACCCCGAG 116134 Query 3310 ACTGGCAGAGACTTATCAACAACCATTGGGGAATCAGACCCAAGTCTCTTAAATTCAAGA 3369 |||||||| | | |||| || ||||||| || | ||||| ||| |||||| Sbjct 116133 ACTGGCAGTGCTTCGTCAAATACAATTGGGGTCTCTGGTCCAAGAGACTTTCCTTCAAGC 116074 Query 3370 TCTTCAATGTCCAAGTCAAAGAAGTCACAACGCAGGATCAGACAAAGACCATTGCAAACA 3429 | || || ||||| || || || ||||| |||||||| | | |||||| | || | Sbjct 116073 TGTTTAACGTCCAGGTTAAGGAGGTCACTACGCAGGAGGGAGCCACGACCATCACCAATA 116014 Query 3430 ATCTCACCTCAACAATTCAAGTCTTTACGGATGATGAGCATCAACTCCCGTATGTCCTGG 3489 | |||||| || || || |||||| |||| || | || ||| | | || || | Sbjct 116013 ACCTCACCAGCACCATCCAGGTCTTTGCGGACTCGGACTACCAGGTCCTGCACGTGCTAG 115954 Query 3490 GCTCGGCTACGGAAGGCACCATGCCGCCGTTCCCGTCGGATGTCTATGCCCTGCCGCAGT 3549 || || || || || |||| || |||||| | |||||| | | || |||| Sbjct 115953 GCAACGCGCACGAGGGAACGCTGCCTCCCTTCCCGGCCCATGTCTTCACGGTCCCCCAGT 115894 Query 3550 ACGGGTACTGCACAATGCACACCAACCAGAATGGAGCACGGTTCAATGACCGTAGTGCAT 3609 ||| ||| ||| || || |||| ||| ||| || | || || | Sbjct 115893 ACGCCTACGACAC---GCTCAACAAC----GGGGACAACGCCGCA--GCTCGCAGCAGCT 115843 Query 3610 TCTACTGCTTAGAGTACTTCCCTAGTCAGATGCTAAGAACAGGCAACAACTTTGAGTTCA 3669 |||||||| | |||||| | || || |||||||| | | |||||||||| | | || Sbjct 115842 TCTACTGCCTCGAGTACATGCCGAGCCAGATGCTGCGGATGGGCAACAACTACGCCTCCA 115783 Query 3670 CATTTGACTTTGAAGAAGTTCCTTTCCA 3697 | | || ||||| || || || || || Sbjct 115782 CGTACGAGTTTGAGGACGTACCCTTTCA 115755 Score = 167 bits (184), Expect = 8e-38 Identities = 191/254 (75%), Gaps = 2/254 (1%) Strand=Plus/Minus Query 1506 AGAGAGTTCAACAAAAGAAACGCCATATGGCTCTACGGACCTGCCACCACCGGGAAGACC 1565 ||| |||| ||| | ||| || | ||||||| | |||||| |||| || |||||| Sbjct 117976 AGAAAGTTGGGCAAGCGGAACACCGTCTGGCTCTTTGCACCTGCGCCCACGGGCAAGACC 117917 Query 1566 AACATTGCAGAAGCTATTGCCCATGCTGTACCCTTCTATGGCTGTGTTAACTGGACTAAT 1625 |||||||| | ||||||||||||||||| ||||| ||||| |||| |||||||| | Sbjct 117916 AACATTGCGGTGGCTATTGCCCATGCTGTGCCCTTTTATGGGCGTGTCAACTGGACCAGC 117857 Query 1626 GAGAACTTTCCTTTTAATGATTGTGTTGATAAAATGCTGATTTGGTGGGAGGAGGGAAAA 1685 ||||||||| || || |||||||||| || || | |||||| |||||||||||| || Sbjct 117856 GAGAACTTT-CTCTTCATGATTGTGTGGACAAGACAGTGATTTTGTGGGAGGAGGGCAAG 117798 Query 1686 ATGACTAATAAGGTTGTTGAATCTGCAAAAGCAATTTTGGGAGGGTCTGCTGTCCGGGTA 1745 ||||| ||||| | || || || || || || |||| || || || || | || Sbjct 117797 ATGACGGCCAAGGTCATGGAGTCGGCCAAGGCCATCCTGGG-GGCTCGGCAGTGTGAGTG 117739 Query 1746 GACCAGAAATGTAA 1759 ||||||||||| || Sbjct 117738 GACCAGAAATGCAA 117725 Score = 78.8 bits (86), Expect = 3e-11 Identities = 182/274 (66%), Gaps = 3/274 (1%) Strand=Plus/Minus Query 2588 TCGGGGCTTTGTACTTCCTGGCTATAAGTATCTTGGGCCTGGTAACGGCCTGGATAAAGG 2647 |||||| | || ||||| || ||||| ||||| || || || || |||||||| || Sbjct 116878 TCGGGGTCTGGTCCTTCCGGGATATAAATATCTCGGACCGTTCAATGGTCTGGATAAGGG 116819 Query 2648 CCCACCTGTCAATAAGGCGGACAGCGTCGCGCTTGAACACGACAAGGCCTATGACCAGCA 2707 | |||| | || ||| |||||| || || |||| | | ||| | |||| Sbjct 116818 AGACCGGGTCAGTCGCGCAGACGCCGTCGCTCTAGAGCACGTC---GGCTACAGCGAGCA 116762 Query 2708 GCTTAAAGCGGGAGACAACCCATATATAAAATTCAATCACGCTGACCAGGACTTTATAGA 2767 ||| | |||||||||||||| || | || | ||| || || ||| || || || Sbjct 116761 GCTCGAGGCGGGAGACAACCCCTACCTCAAGTGCAACCATGCCGACAGAGAATTCCAGGA 116702 Query 2768 TAGCCTCCAAGACGACCAGTCATTCGGAGGTAATCTTGGAAAGGCTGTATTTCAGGCCAA 2827 | | | |||||| | || || | || || |||| || || ||||||||||| Sbjct 116701 GAAGCACTCTGACGACACCTGTTTTGGGAGAAACCTCGGAAGAGCAGTCTTTCAGGCCAA 116642 Query 2828 AAAACGTATCTTAGAGCCATTTGGCCTAGTAGAA 2861 ||| || | | ||||| |||||||| || ||| Sbjct 116641 AAAGCGACTGCTTGAGCCTTTTGGCCTCGTTGAA 116608 >seq429 Length=2207880 Score = 87.8 bits (96), Expect = 6e-14 Identities = 102/136 (75%), Gaps = 9/136 (7%) Strand=Plus/Minus Query 1602 TATGGCTGTGTTAACTGGACTAATGAGAACTTTCCTTTTAATGATTGTGTTGATAAAATG 1661 |||||||||| ||| ||||| |||| ||||||| | ||||| |||||||||||| Sbjct 541769 TATGGCTGTGCTAATTGGACCGATGAAAACTTTCTACTCGATGATGGTGTTGATAAAAAA 541710 Query 1662 CTGATTTGGTGGGAGGAGGGAAAA----ATGACTAATAAGGTT----GTTGAATCTGCAA 1713 | |||||||||||| | || ||| |||| ||| || || |||||| |||||| Sbjct 541709 TTAATTTGGTGGGAGAAAGGTAAAATTCATGA-TAAAAAATTTCATGGTTGAAACTGCAA 541651 Query 1714 AAGCAATTTTGGGAGG 1729 ||||| || | ||||| Sbjct 541650 AAGCAGTTCTAGGAGG 541635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16215940529085