Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04]
63,439 sequences; 2,073,344,508 total letters
Query= NC_001701.1
Length=5106
Score E
Sequences producing significant alignments: (Bits) Value
seq615 181 3e-42
seq875 172 2e-39
seq429 87.8 6e-14
>seq615
Length=480679
Score = 181 bits (200), Expect = 3e-42
Identities = 191/250 (76%), Gaps = 1/250 (0%)
Strand=Plus/Plus
Query 1510 AGTTCAACAAAAGAAACGCCATATGGCTCTACGGACCTGCCACCACCGGGAAGACCAACA 1569
||||| ||| || |||||||| ||||||| ||||||| |||||||| ||||||||||
Sbjct 3944 AGTTCGGCAAGAGGAACGCCATCTGGCTCTTTGGACCTGTGACCACCGGCAAGACCAACA 4003
Query 1570 TTGCAGAAGCTATTGCCCATGCTGTACCCTTCTATGGCTGTGTTAACTGGACTAATGAGA 1629
|||| || |||||||||||||| || |||||||||||||| || | |||||| |||||||
Sbjct 4004 TTGCGGAGGCTATTGCCCATGCCGTGCCCTTCTATGGCTGCGTCAGCTGGACCAATGAGA 4063
Query 1630 ACTTTCCTTTTAATGATTGTGTTGATAAAATGCTGATTTGGTGGGAGGAGGGAAAAATGA 1689
| ||||| |||| || || | || || ||| |||| ||||||||||| | || ||||
Sbjct 4064 ATTTTCC-CTTAACGACTGCATGGACAAGATGGTGATCCGGTGGGAGGAGTGCAAGATGA 4122
Query 1690 CTAATAAGGTTGTTGAATCTGCAAAAGCAATTTTGGGAGGGTCTGCTGTCCGGGTAGACC 1749
| ||||| || || || || || || || || || ||| | || | || |||
Sbjct 4123 CGGCCAAGGTCGTGGAGTCAGCCAAGGCCATCCGAGGGGGCTCTACGGTGCAAGTCAACC 4182
Query 1750 AGAAATGTAA 1759
||||||| ||
Sbjct 4183 AGAAATGCAA 4192
Score = 123 bits (136), Expect = 8e-25
Identities = 263/385 (68%), Gaps = 11/385 (3%)
Strand=Plus/Plus
Query 3073 GGGGTGCCGATGGAGTGGGTAATGCCTCGGGAAATTGGCATTGCGATTCCCAATGGATGG 3132
|| || |||| |||||||| ||||| | |||||||| | ||| || ||||||||
Sbjct 5617 GGTGTTCCGACGGAGTGGGCTCTGCCTGCAGTGATTGGCATGGAGATACCACATGGATGG 5676
Query 3133 GAAACACAGTCATCACAAAGACCACCAGAACCTGGGTCCTGCCAAGCTACAACAACCACA 3192
|| || ||||| |||||| |||| | || || ||||||| | ||||||||||||||
Sbjct 5677 GAGACCGTGTCATTACAAAGTCCACACGGACAGGGATCCTGCCCACCTACAACAACCACA 5736
Query 3193 TCTACAAAGCAATTACCAGCGGAACCTCTCAAGATGCAAATGTCCAGTATGCAGGATACA 3252
|||||| || |||||| ||| || | |||| | | | | |
Sbjct 5737 TCTACAGGCGGATCACCAGCTCCACCGG-CATCA-GCAA----CGACAACACCTACTTTG 5790
Query 3253 GTACCCCCTGGGGGTACTTTGATTTCAACCGCTTCCACTGCCACTTCTCCCCTAGAGACT 3312
|| | || | || ||||| ||||||||||||||||||||||| | || ||||||
Sbjct 5791 GTTAGGCGTGCTG-TATTTTGACTTCAACCGCTTCCACTGCCACTTTTTACCCCGAGACT 5849
Query 3313 GGCAGAGACTTATCAACAACCATTGGGGAATCAGACCCAAGTCTCTTAAATTCAAGATCT 3372
|| || | || |||| ||| ||||| ||| | || ||| || |||||| | |
Sbjct 5850 GGAAGCGTCTCGTCAATAACAGCTGGGGTATCCGGCCTAAGCAACTCGGTTTCAAGTTAT 5909
Query 3373 TCAATGTCCAAGTCAAAGAAGTCACAACGCAG-GATCAG-ACAAAGACCATTGCAAACAA 3430
||| | |||||||| || ||||| | ||| | ||| ||||||||||| || || ||
Sbjct 5910 TCACCATACAAGTCAAGGAGGTCACGA--CAGTCAACAGCACAAAGACCATCGCCAATAA 5967
Query 3431 TCTCACCTCAACAATTCAAGTCTTT 3455
|||||| || || || || |||
Sbjct 5968 CCTCACCAGCACCATCCAGGTGTTT 5992
>seq875
Length=186252
Score = 172 bits (190), Expect = 2e-39
Identities = 421/628 (67%), Gaps = 20/628 (3%)
Strand=Plus/Minus
Query 3073 GGGGTGCCGATGGAGTGGGTAATGCCTCGGGAAATTGGCATTGCGATTCCCAATGGATGG 3132
|||||| ||||| |||||| | ||||||||||||||| |||| ||||| |||||||||
Sbjct 116365 GGGGTGACGATGCAGTGGGGAGCTCCTCGGGAAATTGGCGTTGCAATTCCAAATGGATGG 116306
Query 3133 GAAACACAGTCATCACAAAGACCACCAGAACCTGGGTCCTGCCAAGCTACAACAACCACA 3192
| ||| || |||| || || || | |||||||||||||| | ||||||| |||||
Sbjct 116305 GCAACCACGTGCTCACCGAGTCCGCCGGGACCTGGGTCCTGCCCA-CTACAACCACCACC 116247
Query 3193 TCTACAA-AGCAATTAC-CAGCGGAACCTCTCAAGATGCA-AATGTCCAGTATGCAGGAT 3249
||||| ||| || || || | | || | | | ||| || | || | |
Sbjct 116246 AGTACAAGCGCATCGACTCAAAGGGAGCCACCAGCAAGGACAATTTC-----TACA-GCT 116193
Query 3250 ACAGTACCCCCTGGGGGTACTTTGATTTCAACCGCTTCCACTGCCACTTCTCCCCTAGAG 3309
|| ||| || ||||| |||||||| || || |||||||| | | |||| || || |||
Sbjct 116192 ACTCTACTCCGTGGGGATACTTTGACTTTAA-CGCTTCCAGTACTACTTTTCACCCCGAG 116134
Query 3310 ACTGGCAGAGACTTATCAACAACCATTGGGGAATCAGACCCAAGTCTCTTAAATTCAAGA 3369
|||||||| | | |||| || ||||||| || | ||||| ||| ||||||
Sbjct 116133 ACTGGCAGTGCTTCGTCAAATACAATTGGGGTCTCTGGTCCAAGAGACTTTCCTTCAAGC 116074
Query 3370 TCTTCAATGTCCAAGTCAAAGAAGTCACAACGCAGGATCAGACAAAGACCATTGCAAACA 3429
| || || ||||| || || || ||||| |||||||| | | |||||| | || |
Sbjct 116073 TGTTTAACGTCCAGGTTAAGGAGGTCACTACGCAGGAGGGAGCCACGACCATCACCAATA 116014
Query 3430 ATCTCACCTCAACAATTCAAGTCTTTACGGATGATGAGCATCAACTCCCGTATGTCCTGG 3489
| |||||| || || || |||||| |||| || | || ||| | | || || |
Sbjct 116013 ACCTCACCAGCACCATCCAGGTCTTTGCGGACTCGGACTACCAGGTCCTGCACGTGCTAG 115954
Query 3490 GCTCGGCTACGGAAGGCACCATGCCGCCGTTCCCGTCGGATGTCTATGCCCTGCCGCAGT 3549
|| || || || || |||| || |||||| | |||||| | | || ||||
Sbjct 115953 GCAACGCGCACGAGGGAACGCTGCCTCCCTTCCCGGCCCATGTCTTCACGGTCCCCCAGT 115894
Query 3550 ACGGGTACTGCACAATGCACACCAACCAGAATGGAGCACGGTTCAATGACCGTAGTGCAT 3609
||| ||| ||| || || |||| ||| ||| || | || || |
Sbjct 115893 ACGCCTACGACAC---GCTCAACAAC----GGGGACAACGCCGCA--GCTCGCAGCAGCT 115843
Query 3610 TCTACTGCTTAGAGTACTTCCCTAGTCAGATGCTAAGAACAGGCAACAACTTTGAGTTCA 3669
|||||||| | |||||| | || || |||||||| | | |||||||||| | | ||
Sbjct 115842 TCTACTGCCTCGAGTACATGCCGAGCCAGATGCTGCGGATGGGCAACAACTACGCCTCCA 115783
Query 3670 CATTTGACTTTGAAGAAGTTCCTTTCCA 3697
| | || ||||| || || || || ||
Sbjct 115782 CGTACGAGTTTGAGGACGTACCCTTTCA 115755
Score = 167 bits (184), Expect = 8e-38
Identities = 191/254 (75%), Gaps = 2/254 (1%)
Strand=Plus/Minus
Query 1506 AGAGAGTTCAACAAAAGAAACGCCATATGGCTCTACGGACCTGCCACCACCGGGAAGACC 1565
||| |||| ||| | ||| || | ||||||| | |||||| |||| || ||||||
Sbjct 117976 AGAAAGTTGGGCAAGCGGAACACCGTCTGGCTCTTTGCACCTGCGCCCACGGGCAAGACC 117917
Query 1566 AACATTGCAGAAGCTATTGCCCATGCTGTACCCTTCTATGGCTGTGTTAACTGGACTAAT 1625
|||||||| | ||||||||||||||||| ||||| ||||| |||| |||||||| |
Sbjct 117916 AACATTGCGGTGGCTATTGCCCATGCTGTGCCCTTTTATGGGCGTGTCAACTGGACCAGC 117857
Query 1626 GAGAACTTTCCTTTTAATGATTGTGTTGATAAAATGCTGATTTGGTGGGAGGAGGGAAAA 1685
||||||||| || || |||||||||| || || | |||||| |||||||||||| ||
Sbjct 117856 GAGAACTTT-CTCTTCATGATTGTGTGGACAAGACAGTGATTTTGTGGGAGGAGGGCAAG 117798
Query 1686 ATGACTAATAAGGTTGTTGAATCTGCAAAAGCAATTTTGGGAGGGTCTGCTGTCCGGGTA 1745
||||| ||||| | || || || || || || |||| || || || || | ||
Sbjct 117797 ATGACGGCCAAGGTCATGGAGTCGGCCAAGGCCATCCTGGG-GGCTCGGCAGTGTGAGTG 117739
Query 1746 GACCAGAAATGTAA 1759
||||||||||| ||
Sbjct 117738 GACCAGAAATGCAA 117725
Score = 78.8 bits (86), Expect = 3e-11
Identities = 182/274 (66%), Gaps = 3/274 (1%)
Strand=Plus/Minus
Query 2588 TCGGGGCTTTGTACTTCCTGGCTATAAGTATCTTGGGCCTGGTAACGGCCTGGATAAAGG 2647
|||||| | || ||||| || ||||| ||||| || || || || |||||||| ||
Sbjct 116878 TCGGGGTCTGGTCCTTCCGGGATATAAATATCTCGGACCGTTCAATGGTCTGGATAAGGG 116819
Query 2648 CCCACCTGTCAATAAGGCGGACAGCGTCGCGCTTGAACACGACAAGGCCTATGACCAGCA 2707
| |||| | || ||| |||||| || || |||| | | ||| | ||||
Sbjct 116818 AGACCGGGTCAGTCGCGCAGACGCCGTCGCTCTAGAGCACGTC---GGCTACAGCGAGCA 116762
Query 2708 GCTTAAAGCGGGAGACAACCCATATATAAAATTCAATCACGCTGACCAGGACTTTATAGA 2767
||| | |||||||||||||| || | || | ||| || || ||| || || ||
Sbjct 116761 GCTCGAGGCGGGAGACAACCCCTACCTCAAGTGCAACCATGCCGACAGAGAATTCCAGGA 116702
Query 2768 TAGCCTCCAAGACGACCAGTCATTCGGAGGTAATCTTGGAAAGGCTGTATTTCAGGCCAA 2827
| | | |||||| | || || | || || |||| || || |||||||||||
Sbjct 116701 GAAGCACTCTGACGACACCTGTTTTGGGAGAAACCTCGGAAGAGCAGTCTTTCAGGCCAA 116642
Query 2828 AAAACGTATCTTAGAGCCATTTGGCCTAGTAGAA 2861
||| || | | ||||| |||||||| || |||
Sbjct 116641 AAAGCGACTGCTTGAGCCTTTTGGCCTCGTTGAA 116608
>seq429
Length=2207880
Score = 87.8 bits (96), Expect = 6e-14
Identities = 102/136 (75%), Gaps = 9/136 (7%)
Strand=Plus/Minus
Query 1602 TATGGCTGTGTTAACTGGACTAATGAGAACTTTCCTTTTAATGATTGTGTTGATAAAATG 1661
|||||||||| ||| ||||| |||| ||||||| | ||||| ||||||||||||
Sbjct 541769 TATGGCTGTGCTAATTGGACCGATGAAAACTTTCTACTCGATGATGGTGTTGATAAAAAA 541710
Query 1662 CTGATTTGGTGGGAGGAGGGAAAA----ATGACTAATAAGGTT----GTTGAATCTGCAA 1713
| |||||||||||| | || ||| |||| ||| || || |||||| ||||||
Sbjct 541709 TTAATTTGGTGGGAGAAAGGTAAAATTCATGA-TAAAAAATTTCATGGTTGAAACTGCAA 541651
Query 1714 AAGCAATTTTGGGAGG 1729
||||| || | |||||
Sbjct 541650 AAGCAGTTCTAGGAGG 541635
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 16215940529085
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |