Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= NC_001729.1 Length=4726 Score E Sequences producing significant alignments: (Bits) Value seq875 477 3e-131 seq615 401 2e-108 >seq875 Length=186252 Score = 477 bits (528), Expect = 3e-131 Identities = 562/752 (75%), Gaps = 10/752 (1%) Strand=Plus/Minus Query 986 GTACATGGAGCTGGTCGGGTGGCTGGTGGACCGCGGGATCACGTCAGAAAAGCAATGGAT 1045 |||||||||||| || ||||||||||| ||| || |||||||| | ||||||||| Sbjct 118268 GTACATGGAGCTCGTTAACTGGCTGGTGGAGAACGGCATTACGTCAGAGA-GCAATGGAT 118210 Query 1046 TCAGGAGGACCAGGCCTCGTACATCTCCTTCAACGCCGCCTCCAACTCGCGGTCCCAGAT 1105 ||||||| |||||| | | ||||| | |||||| | ||| | || || || || Sbjct 118209 TCAGGAGAACCAGGAAGCCTGTATCTCTTACAACGCGACGGGCAATGCCCGCTCGCAAAT 118150 Query 1106 CAAGGCCGCGCTGGACAATGCCTCCAAGATCATGAGCCTGACAAAGACGGCTCCGGACTA 1165 |||| | || |||||||| ||| ||| ||| |||||||||| |||||||| ||||||| Sbjct 118149 CAAGTCGGCTCTGGACAACGCCAGCAAAATCGTGAGCCTGACCAAGACGGCCTCGGACTA 118090 Query 1166 CCTGGTGGG--CAGCAACCCGCCGGAGGACATTACCAAAAATCGGATCTACCAAATCCTG 1223 |||||| || | ||| | ||| ||| ||| | || || || ||| ||| | Sbjct 118089 CCTGGTCGGGTCTGCATC--GCCAGAG--CATCGAGGACAACCGCGTCCACCGCATCTTT 118034 Query 1224 GAGCTGAACGGGTACGATCCGCAGTACGCGGCCTCCGTCTTCCTGGGCTGGGCGCAAAAG 1283 | || ||||| ||||| ||| || || | ||| || | ||||||||| | || Sbjct 118033 CACCTCAACGGCTACGACCCGGCCTATGCCGGCTCAGTGGTGCTGGGCTGGTGCCGAAGA 117974 Query 1284 AAGTTCGGGAAGAGGAACACCATCTGGCTCTTTGGGCCGGCCACGACGGGTAAAACCAAC 1343 ||||| || ||| |||||||| |||||||||||| || || | ||||| || |||||| Sbjct 117973 AAGTTGGGCAAGCGGAACACCGTCTGGCTCTTTGCACCTGCGCCCACGGGCAAGACCAAC 117914 Query 1344 ATCGCGGAAGCCATCGCCCACGCCGTGCCCTTCTACGGCTGCGTAAACTGGACCAATGAG 1403 || |||| || || ||||| || |||||||| || || | || |||||||||| ||| Sbjct 117913 ATTGCGGTGGCTATTGCCCATGCTGTGCCCTTTTATGGGCGTGTCAACTGGACCAGCGAG 117854 Query 1404 AACTTTCCCTTCAACGATTGCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGCAAGATG 1463 ||||||| ||||| ||||| || ||||||| ||||| | ||||||||||||||||||| Sbjct 117853 AACTTTCTCTTCAT-GATTGTGTGGACAAGACAGTGATTTTGTGGGAGGAGGGCAAGATG 117795 Query 1464 ACGGCCAAGGTCGTGGAGAGCGCCAAGGCCATTCTGGGCGGAAGCAAGGTGCGCGTGGAC 1523 |||||||||||| ||||| ||||||||||| ||||| | | || || | |||||| Sbjct 117794 ACGGCCAAGGTCATGGAGTCGGCCAAGGCCATCCTGGGGGCTCGGCAG-TGTGAGTGGAC 117736 Query 1524 CAAAAGTGCAAGTCATCGGCCCAGATCGAACCCACTCCCGTGATCGTCACCTCCAACACC 1583 || || |||||| | ||| |||| |||||||| || || ||| |||||||||||||| Sbjct 117735 CAGAAATGCAAGCC-TCGCAGCAGACTGAACCCACACCGGTCATCATCACCTCCAACACC 117677 Query 1584 AACATGTGCGCCGTGATTGACGGGAACAGCACCACCTTCGAGCATCAGCAGCCGCTGCAG 1643 |||||||||| || | |||||| ||| | ||||| || || || |||||| | ||| Sbjct 117676 AACATGTGCGTGGTCACTGACGGAAACTCGAAGACCTTTGAACACCAACAGCCGTTACAG 117617 Query 1644 GACCGGATGTTTGAATTTGAACTTACCCGCCGTTTGGACCATGACTTTGGGAAGGTCACC 1703 ||||| ||||| | || ||||| || ||||||||| | ||||||||||| || || Sbjct 117616 GACCGCATGTTCAAGTTGGAACTGACTTACCGTTTGGAGCCAGACTTTGGGAAAGTGACT 117557 Query 1704 AAACAGGAAGTAAAGGACTTTTTCCGGTGGGC 1735 || | ||| || || ||||||||| ||||| Sbjct 117556 AAGCGGGAGGTCAAAGACTTTTTCGCCTGGGC 117525 Score = 259 bits (286), Expect = 1e-65 Identities = 432/617 (70%), Gaps = 7/617 (1%) Strand=Plus/Minus Query 2856 GGGTGCCGATGGAGTGGGTAATTCCTCAGGAAATTGGCATTGCGATTCCCAATGGCTGGG 2915 ||||| ||||| |||||| | ||||| |||||||||| |||| ||||| ||||| |||| Sbjct 116364 GGGTGACGATGCAGTGGGGAGCTCCTCGGGAAATTGGCGTTGCAATTCCAAATGGATGGG 116305 Query 2916 CGACAGAGTCATCACCACCAGCACCAGAACCTGGGCCCTGCCCACTTACAACAACCATCT 2975 | || || ||||| | || | ||||||| |||||||||| ||||| |||| | Sbjct 116304 CAACCACGTGCTCACCGAGTCCGCCGGGACCTGGGTCCTGCCCACT-ACAACCACCACCA 116246 Query 2976 CTACAAGCAAATCTCCAGCCAATCAGGAGCTTCAAACGACAACCACTACTTTGGCTACAG 3035 ||||||| ||| | ||| ||||| | | | | || | | || ||||| Sbjct 116245 GTACAAGCGCATCGACT--CAAAG-GGAGCCACCAGCAAGGACAATTTCTACAGCTACTC 116189 Query 3036 CACCCCTTGGGGGTATTTTGACTTTAACAGATTCCACTGCCACTTCTCACCACGTGACTG 3095 || || ||||| || |||||||||||| | ||||| | | |||| ||||| || ||||| Sbjct 116188 TACTCCGTGGGGATACTTTGACTTTAAC-GCTTCCAGTACTACTTTTCACCCCGAGACTG 116130 Query 3096 GCAGCGACTCATTAACAACAACTGGGGATTCCGGCCCAAGAAACTCAGCTTCAAGCTCTT 3155 |||| | || | || |||| ||||| || || |||||| ||| ||||||||| || Sbjct 116129 GCAGTGCTTCGTCAAATACAATTGGGGTCTCTGGTCCAAGAGACTTTCCTTCAAGCTGTT 116070 Query 3156 CAACATCCAAGTTAGAGGGGTCACGCAGAACGATGGCACGACGACTATTGCCAATAACCT 3215 ||| |||| |||| | |||||| | | || || | ||||| || |||||||||| Sbjct 116069 TAACGTCCAGGTTAAGGAGGTCACTACGCAGGAGGGAGCCACGACCATCACCAATAACCT 116010 Query 3216 TACCAGCACGGTTCAAGTGTTTACGGACTCGGAGTATCAGCTCCCGTACGTGCTCGGGTC 3275 |||||||| | || || ||| |||||||||| || ||| ||| | ||||||| || Sbjct 116009 CACCAGCACCATCCAGGTCTTTGCGGACTCGGACTACCAGGTCCTGCACGTGCTAGGCAA 115950 Query 3276 GGCGCACCAAGGCTGTCTCCCGCCGTTTCCAGCGGACGTCTTCATGGTCCCTCAGTATGG 3335 |||||| | || || || || || || || | ||||||| |||||| ||||| | Sbjct 115949 CGCGCACGAGGGAACGCTGCCTCCCTTCCCGGCCCATGTCTTCACGGTCCCCCAGTACGC 115890 Query 3336 ATACCTCACCCTGAACAACGGAAGTCAA-GCGGTGGGACGCTCATCCTTTTACTGCCTGG 3394 ||| ||| || |||||||| | ||| || | | ||| ||| |||||||| | Sbjct 115889 CTACGACACGCTCAACAACGG-GGACAACGCCGCAGCTCGCAGCAGCTTCTACTGCCTCG 115831 Query 3395 AGTACTTCCCTTCGCAGATGCTAAGGACTGGAAATAACTTCCAATTCAGCTATACCTTCG 3454 ||||| | || |||||||| ||| || || |||| | | || || || | Sbjct 115830 AGTACATGCCGAGCCAGATGCTGCGGATGGGCAACAACTACGCCTCCACGTACGAGTTTG 115771 Query 3455 AGGATGTACCTTTTCAC 3471 |||| ||||| |||||| Sbjct 115770 AGGACGTACCCTTTCAC 115754 Score = 181 bits (200), Expect = 3e-42 Identities = 368/538 (68%), Gaps = 24/538 (4%) Strand=Plus/Minus Query 2082 TATCAGAAACTGTGTCCAATTCATCATATCCTGGGAAGGGCACCCGAGATTGCC--TGTT 2139 ||| | || ||||| || |||||||||| |||| ||| || ||| ||| |||| Sbjct 117135 TATAAAAAGCTGTGCGCAGTTCATCATATTCTGGTCCGGGGGCCAGAGG--GCCAGTGTT 117078 Query 2140 CGGCCTGCGATTTGGCCAATGTGGAC----TTGG-----ATGACTGTGTTTCTGAGCAAT 2190 | ||||| || | ||||||| ||| ||| || |||| | || |||| Sbjct 117077 CTGCCTGTAATCTCACCAATGTTGACAATGTTGATCTCAATAACTGCAATAAAGAACAAT 117018 Query 2191 AAATGACTTAAACCAGGTATGGCTGCTGACGGTTATCTTCCAGATTGGCTCGAGGACAAC 2250 | ||||| |||| || |||||||| || || || |||||| ||| | ||||||| Sbjct 117017 GATTGACTCAAAC-AGATATGGCTGATG---GTCATTTTCCAGGCTGGTTGGAGGACACT 116962 Query 2251 CTTTCTGAAGGCATTCGTGAGTGG--TGGGCTCTGAAACCTGGAGTCCCTCAACCCAAAG 2308 | ||||| || || ||||| | | | || |||||| || |||| Sbjct 116961 TTCTCTGAGGGTCGGCGCCAGTGGAATAGATGC--AAGGCTGGAGCGCCCAAACCGCGGC 116904 Query 2309 CGAACCAACAACACCAGGACAACCGTCGGGGTCTTGTGCTTCCGGGTTACAAATACCTCG 2368 | |||| | ||||| ||| ||||||||| || |||||||| || ||||| |||| Sbjct 116903 CTCACCAGCGTCACCAAGACTCTTCTCGGGGTCTGGTCCTTCCGGGATATAAATATCTCG 116844 Query 2369 GACCCGGTAACGGACTCGACAAAGGAGAGCCGGTCAACGAGGCGGACGCGGCAGCCCTCG 2428 |||| || || || || || ||||| | ||||| || ||||| | || || | Sbjct 116843 GACCGTTCAATGGTCTGGATAAGGGAGACCGGGTCAGTCGCGCAGACGCCGTCGCTCTAG 116784 Query 2429 AACACGACAAAGCTTACGACCAGCAGCTCAAGGCCGGTGACAACCCGTACCTCAAGTACA 2488 | |||| | ||| || | |||||||| |||| || |||||||| |||||||||| || Sbjct 116783 AGCACGTCG--GCT-ACAGCGAGCAGCTCGAGGCGGGAGACAACCCCTACCTCAAGTGCA 116727 Query 2489 ACCACGCCGACGCCGAGTTTCAGGAGCGTCTTCAAGAAGATACGTCTTTTGGGGGCAACC 2548 |||| |||||| || || |||||| | || || || | ||||||| | |||| Sbjct 116726 ACCATGCCGACAGAGAATTCCAGGAGAAGCACTCTGACGACACCTGTTTTGGGAGAAACC 116667 Query 2549 TTGGCAGAGCAGTCTTCCAGGCCAAAAAGAGGATCCTTGAGCCTCTTGGTCTGGTTGA 2606 | || ||||||||||| |||||||||||| | | ||||||||| |||| || ||||| Sbjct 116666 TCGGAAGAGCAGTCTTTCAGGCCAAAAAGCGACTGCTTGAGCCTTTTGGCCTCGTTGA 116609 Score = 116 bits (128), Expect = 1e-22 Identities = 210/301 (70%), Gaps = 12/301 (4%) Strand=Plus/Minus Query 4018 GGCATGGTGTGGCAAGATCGTGACGTGTACCTTCAAGGACCTATCTGGGCAAAGATTCCT 4077 |||||||| ||||| | || | | | ||||| || || || |||||||| |||||||| Sbjct 115252 GGCATGGTCTGGCAGAACCGCGGCATTTACCTGCAGGGCCCGATCTGGGCCAAGATTCCC 115193 Query 4078 CACACGGATGGACACTTTCATCCTTCTCCTCTGATGGGAGGCTTTGGACTGAAACATCCG 4137 ||||| | || ||| || || || || || |||||||| || || | | | | Sbjct 115192 CACACAGGCGGCAGCTTCCACCCGTCCCCGCTCATGGGAGGATTCGGGTTCAGGAAGCT- 115134 Query 4138 CCTCCTCAAATCATGATCAAAAATACTCCGGTACCGGCAAATCCTCC-GACGACTTTCAG 4196 |||||||| ||| | || ||||||| | ||| || || |||||||| | ||||||| Sbjct 115133 CCTCCTCAGATC-TCATAAAAAATATGCTGGTTCCCGCCAATCCTCCCGTCGACTTTGCC 115075 Query 4197 CCCGGCCAAGTTT----GCTTCATTTATCACTCAGTACTCCACTGGACAGGTCAGCGTGG 4252 ||| || ||||| ||||||| || ||| || |||||||||||| | || | Sbjct 115074 CCCAGC-AAGTTCCAGAGCTTCAT----CAACCAGGACAGCACTGGACAGGTGACAGTAG 115020 Query 4253 AAATTGAGTGGGAGCTACAGAAAGAAAACAGCAAACGTTGGAATCCAGAGATTCAGTACA 4312 | |||||||| |||| ||| || || || | ||||| || ||| | ||||||| Sbjct 115019 AGCTTGAGTGGCAGCTGCAGCGGGAGGACTCGAAGTGCTGGAACCCCGAGGTGCAGTACA 114960 Query 4313 C 4313 | Sbjct 114959 C 114959 >seq615 Length=480679 Score = 401 bits (444), Expect = 2e-108 Identities = 589/836 (70%), Gaps = 42/836 (5%) Strand=Plus/Plus Query 987 TACATGGAGCTGGTCGGGTGGCTGGTGGACCGCGGGATCACGTCAGAAAAGCAATGGATT 1046 ||||||| ||||| || ||||| || | | | |||||||| | ||||||||| Sbjct 3651 TACATGGCACTGGTTAACTGCCTGGTAGAGAACAGCACTACGTCAGAGAGACAATGGATT 3710 Query 1047 CAGGAGGACCAGGCCTCGTACATCTCCTTCAACGCCGCCTCCA-------------ACTC 1093 |||||| |||||| || || |||| | ||| ||| | || | | Sbjct 3711 CAGGAGAACCAGGAGTCCTATCTCTCTTACAATGCCACGGGCATTGCAAGAGAGATAGGC 3770 Query 1094 GCGGTCCCAGATCAAGGCCGCGCTGGACAATGCCTCCAAGATCATGAGCCTGACAAAGAC 1153 | |||| ||||||||| | || ||||| ||||| ||| ||| Sbjct 3771 GTGGTCGCAGATCAAGTCGGCTCTGGAAGATGCCAGCAAAATCT---------------- 3814 Query 1154 GGCTCCGGACTACCTGGTGGG--CAGCAACCCGCCGGAGGACATTACCAAAAATCGGATC 1211 || ||||||| ||| | || | | | ||||| |||||||||||| || || | | Sbjct 3815 -GCCGCGGACTATCTGTTCGGTTCTGTA--CCGCCTGAGGACATTACCGTGAACCGCAGC 3871 Query 1212 TACCAAATCCTGGAGCTGAACGGGTACGATCCGCAGTACGCGGCCTCCGTCTTCCTGGGC 1271 || |||| | || |||| || || || || | ||| |||| | | || | Sbjct 3872 TAATGAATCTTCTAGATGAATGGCTATGACGCGGCCTGCGCCAGCTCCATTCTGCTCCGG 3931 Query 1272 TGGGCGCAAAAGAAGTTCGGGAAGAGGAACACCATCTGGCTCTTTGGGCCGGCCACGACG 1331 ||| ||||| |||||||| ||||||||| |||||||||||||||| || | || || Sbjct 3932 TGGTGCCAAAA-AAGTTCGGCAAGAGGAACGCCATCTGGCTCTTTGGACCTGTGACCACC 3990 Query 1332 GGTAAAACCAACATCGCGGAAGCCATCGCCCACGCCGTGCCCTTCTACGGCTGCGTAAAC 1391 || || |||||||| ||||| || || ||||| |||||||||||||| |||||||| | | Sbjct 3991 GGCAAGACCAACATTGCGGAGGCTATTGCCCATGCCGTGCCCTTCTATGGCTGCGTCAGC 4050 Query 1392 TGGACCAATGAGAACTTTCCCTTCAACGATTGCGTCGACAAGATGGTGATCTGGTGGGAG 1451 |||||||||||||| |||||||| ||||| ||| | ||||||||||||||| |||||||| Sbjct 4051 TGGACCAATGAGAATTTTCCCTT-AACGACTGCATGGACAAGATGGTGATCCGGTGGGAG 4109 Query 1452 GAGGGCAAGATGACGGCCAAGGTCGTGGAGAGCGCCAAGGCCATTCTGGGCGGAAGCAAG 1511 ||| |||||||||||||||||||||||||| ||||||||||| | || || | | Sbjct 4110 GAGTGCAAGATGACGGCCAAGGTCGTGGAGTCAGCCAAGGCCATCCGAGGGGGCTCTACG 4169 Query 1512 GTGCGCGTGGACCAAAAGTGCAAGTCATCGGCCCAGATCGAACCCACTCCCGTGATCGTC 1571 |||| || |||| || |||||||| | | ||||| || ||||||| || ||| || Sbjct 4170 GTGCAAGTCAACCAGAAATGCAAGTCCTGGCAGCAGATTGACCCCACTCTGGTCATCATC 4229 Query 1572 ACCTCCAACACCAACATGTGCGCCGTGATTGACGGGAACAGCACCACCTTCGAGCATCAG 1631 |||||| ||| |||| |||||| || || ||||||||| || || || || || ||| Sbjct 4230 ACCTCCTACATCAACGTGTGCGTGGTCATCGACGGGAACTCCATGACTTTTGAACACCAG 4289 Query 1632 CAGCCGCTGCAGGACCGGATGTTTGAATTTGAACTTACCCGCCGTTTGGACCATGACTTT 1691 |||||||||||||| ||||||| |||||||||| || ||| |||||| | | ||| Sbjct 4290 CAGCCGCTGCAGGATTGGATGTTCAAATTTGAACTAACGCGCTGTTTGGCGCCAGGTTTT 4349 Query 1692 GGGAAGGTCACCAAACAGGAAGTAAAGGACTTTTTCCGGTGGGCTTCCGATCACGTGACT 1751 ||||| || || || || || || | ||| || ||||| | || ||| | Sbjct 4350 GGGAAAGTGACTAAGTGAGAGGTCAAAGGCTTCTTTGCCTGGGCGCCGGAACACCCCAGG 4409 Query 1752 GACGTGGCTCATGAGTTCTACGTCAGAAAGGGTGGAGCTAA------GAAACGCCC 1801 || ||| | || |||| |||||| | |||||| |||| ||||||||| Sbjct 4410 GAGGTGACGCACCAGTTTGACGTCACTAGGGGTGGGACTAACTGTGGGAAACGCCC 4465 Score = 259 bits (286), Expect = 1e-65 Identities = 491/715 (69%), Gaps = 37/715 (5%) Strand=Plus/Plus Query 2780 CACCAGCAGCCCCCACAAGTTTGGGATCTAATACAATG-------------GCTT----- 2821 || ||||||||||| | ||||| ||||||||||||| | || Sbjct 5526 CAGCAGCAGCCCCCGTCAATTTGGAATCTAATACAATGATCTAGTTGTCAAGTTTGCCAC 5585 Query 2822 -CAGGCGGTGGCGCACCAATGGCAGACAATAACGAGGGTGCCGATGGAGTGGGTAATTCC 2880 |||| |||||| ||||| ||| |||| | | || |||| |||||||| | || Sbjct 5586 GCAGGAGGTGGCTCACCAGTGG---ACAACATGCGGTGTTCCGACGGAGTGGGCTCTGCC 5642 Query 2881 TCAGGAAATTGGCATTGCGATTCCCAATGGCTGGGCGACAGAGTCATCACCACCAGCACC 2940 | | |||||||| | ||| || |||| |||| ||| | ||||| || | ||| Sbjct 5643 TGCAGTGATTGGCATGGAGATACCACATGGATGGGAGACCGTGTCATTACAAAGTCCACA 5702 Query 2941 AGAACCTGGGCCCTGCCCACTTACAACAACCATCTCTACAAGCAAATCTCCAGC-CAATC 2999 | || || ||||||||| ||||||||||| |||||| || ||| ||||| | | | Sbjct 5703 CGGACAGGGATCCTGCCCACCTACAACAACCACATCTACAGGCGGATCACCAGCTCCACC 5762 Query 3000 AGGAGCTTCAAACGACAACCACTACTTTGGCTACAGCACCCCTTGGGGGTATTTTGACTT 3059 | | | ||| ||||||| ||||||||| || | || | ||||||||||| Sbjct 5763 GGCATCAGCAA-CGACAACACCTACTTTGGTTAGG------CGTGCTG-TATTTTGACTT 5814 Query 3060 TAACAGATTCCACTGCCACTTCTCACCACGTGACTGGCAGCGACTCATTAACAACAACTG 3119 ||| | |||||||||||||| | ||| || |||||| |||| ||| | || |||| ||| Sbjct 5815 CAACCGCTTCCACTGCCACTTTTTACCCCGAGACTGGAAGCGTCTCGTCAATAACAGCTG 5874 Query 3120 GGGATTCCGGCCCAAGAAACTCAGCTTCAAGCTCTTCAACATCCAAGTTAGAGGGGTCAC 3179 ||| ||||||| ||| ||||| | |||||| | |||| ||| ||||| | | |||||| Sbjct 5875 GGGTATCCGGCCTAAGCAACTCGGTTTCAAGTTATTCACCATACAAGTCAAGGAGGTCAC 5934 Query 3180 G-CAGAACGATGGCACGACGACTATTGCCAATAACCTTACCAGCACGGTTCAAGTGTTTA 3238 | ||| | | |||| | ||| || ||||||||||| |||||||| | || |||||| Sbjct 5935 GACAG-TCAACAGCACAAAGACCATCGCCAATAACCTCACCAGCACCATCCAGGTGTTTG 5993 Query 3239 CGG--ACTCGGAGTATCAGCTCCCGTACGTGCTCGGGTCGGCGCACCAAGGCTGTCTCCC 3296 || || |||| | ||||||||| | || || || ||| |||| || || || Sbjct 5994 TGGACACACGGACTGTCAGCTCCCACCCTTGACTGGCAATGCCCACGAAGGGTGCCTACC 6053 Query 3297 GCCGTTTCCAGCGGACGTCTTCATGGTCCCTCAGTATGGATACCTCACCCTGAACAACGG 3356 || ||||| || ||||||| ||||| ||||| || |||| || || | |||||||| Sbjct 6054 CCCTTTTCCCGCCAACGTCTTTATGGTGCCTCAATACAGATAACTGACTTTCAACAACGG 6113 Query 3357 AAGTCAAGCGGTG-GGACGCTCATCCTTTTACTGCCTGGAGTACTTCCCTTCGCAGATGC 3415 | | ||| | | || ||| || || | |||| ||| || | |||| Sbjct 6114 GCACAATGTCGTGCCCAGGAGCA-CCTACTATTGTCGGGAGCGCTTTCCCAGCAAAATGC 6172 Query 3416 TAAGGACTGGAAATAACTTCCAATTCAGCTATACCTTCGAGGATGTACCTTTTCA 3470 |||| || || || ||||| ||| ||||| ||| ||||| ||||||||||| Sbjct 6173 TAAGAACAGGCAACAACTTTGCCTTCGGCTATGACTTTGAGGAGGTACCTTTTCA 6227 Score = 154 bits (170), Expect = 4e-34 Identities = 299/442 (68%), Gaps = 31/442 (7%) Strand=Plus/Plus Query 2215 GCTGACGGTTATCTTCCAGATTGGCTCGAGGACAACCTTTCTGAAGGCATTCGTGAGTGG 2274 ||||| |||||| || |||||||| | |||| | ||||||| ||||| || | || ||| Sbjct 4987 GCTGATGGTTATTTTACAGATTGGTTGGAGGGTACCCTTTCTAAAGGCTTTTGCGACTGG 5046 Query 2275 TGGGCTCTGAAACCTGGAGTCCCTCAACCCAAAGCGAACCAACAACACCAGGACAACCGT 2334 | ||| || |||| | | ||||| ||||||| ||| | Sbjct 5047 T----------------AGTGCCCAAACCGAGGCCTAACCATTAACACCAAGACTCTGCT 5090 Query 2335 CGGGGTCTTGTGCTTCCGGGTTACAAATACCTCGGACCCGGTAACGGACTCGACAAAGGA 2394 |||||||| || |||||||| || ||||| ||||| ||| ||| | || || |||||| Sbjct 5091 CGGGGTCTGGTCCTTCCGGGATATAAATATCTCGGTCCCCTCAACAGTCTGGATAAAGGA 5150 Query 2395 GAGCCGGTCAACGAGGCGGACGCGGCAGCCCTCGAACACGACA--AAGCTTACGACCAGC 2452 || |||| ||| || ||||| |||| || || ||| || | || | ||| Sbjct 5151 GACGCGGTTAACAGAGCAGACGCCATTGCCCAAGAGCAGGACGTCAACC--ACCGCGAGC 5208 Query 2453 AGCTCAAGGCCGGTGACA----ACCCGTACCTCAAGTACAACCACGCCGACGCCGAGTTT 2508 |||| |||| || |||| | || |||||||||| |||| || | ||| |||||| Sbjct 5209 AGCTGGAGGCGGGAGACAGACAATCCTTACCTCAAGTCCAACTACACTGACCGAGAGTTT 5268 Query 2509 CAGGAGCGTCTTCAAGAAGATACGTCTTTTGGGGGCAACCTTGGCAGAGCAGTCTTCCAG 2568 || || || || | || ||||||||| | ||||| || | |||||||||||| Sbjct 5269 CAAAAGAAGCTCTCTGACAACACCTCTTTTGGGCGTAACCTCGGAAAGGCAGTCTTCCAG 5328 Query 2569 GCCAAAAAGA----GGATCCTTGAGCCTCTTGGTCTGGTTGAG---GAAGCAGCTAAAAC 2621 ||||| |||| | | |||||||| || |||||| |||| || | |||| || Sbjct 5329 GCCAAGAAGAGTCTGTCTGTTTGAGCCTTTTAGTCTGGCTGAGTAAGAGGGCGCTACGAC 5388 Query 2622 GGCTCCTGGAAAGAAGGGGGCT 2643 |||||||| ||||| | ||| Sbjct 5389 AGCTCCTGGGGAGAAGCGCGCT 5410 Score = 150 bits (166), Expect = 5e-33 Identities = 245/346 (71%), Gaps = 9/346 (3%) Strand=Plus/Plus Query 3986 CTGGA-ACTGTCAATCATCAGGGGGCCTTACCTGGCATGGTGTGGCAAGATCGTGACGTG 4044 ||||| | |||||| || |||| | ||||||||| ||||| | || ||| | Sbjct 6719 CTGGAGAATGTCAACTCTCTCGGGGTGCTGCCTGGCATGAATTGGCAGAACCGAGACATC 6778 Query 4045 TACCTTCAAGGACCTATCTGGGCAAAGATTCCTCACACGGATGGACACTTTCATCCTTCT 4104 ||||| || | | |||||||| ||| |||| ||||| || || |||||||||| ||| Sbjct 6779 TACCTCCAGAGCCTGATCTGGGCCAAGGTTCCACACACTGACGGGCACTTTCATCTGTCT 6838 Query 4105 CCTCTGATGGGAGGCTTTGGACTGAAACATCCGCCTCCTCAAATCATGATCAAAAATACT 4164 ||||| ||||| || || || || || | | |||| ||| ||| || |||| || || Sbjct 6839 CCTCTCATGGGGGGATTCGGTCTCAAGAAGGCCCCTCTTCAGATCCTGGTCAAGAACACC 6898 Query 4165 CCGGTACCGGCAAATCCTCC-GACGACTTT-CAGCCCGGCCAAGTTTGCTTCA--TTTAT 4220 ||||| || || ||||||| | || ||| || | | |||| | | || || || Sbjct 6899 CCGGTTCCTGCCGATCCTCCAGTGGAATTTACAAGC--GTCAAGCT--CAACAGCTTCAT 6954 Query 4221 CACTCAGTACTCCACTGGACAGGTCAGCGTGGAAATTGAGTGGGAGCTACAGAAAGAAAA 4280 ||||||||| ||| |||| | | |||||||||| | | |||||| ||| || | Sbjct 6955 CACTCAGTATAGCACCAGACAAGAAACCGTGGAAATTAAATAGGAGCTGCAGCTGGAGGA 7014 Query 4281 CAGCAAACGTTGGAATCCAGAGATTCAGTACACTTCCAACTACAAC 4326 | ||| | ||||| ||||| ||||| ||||||||||||| |||| Sbjct 7015 CTCCAAGAGGTGGAACCCAGAAATTCAATACACTTCCAACTTCAAC 7060 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15000784267785