Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04]
63,439 sequences; 2,073,344,508 total letters
Query= NC_004828.1
Length=4694
Score E
Sequences producing significant alignments: (Bits) Value
seq875 306 1e-79
seq615 288 3e-74
>seq875
Length=186252
Score = 306 bits (338), Expect = 1e-79
Identities = 526/745 (71%), Gaps = 34/745 (5%)
Strand=Plus/Minus
Query 907 TACATGGAGCTCGTGGATTGGCTCGTGGAGAAGGGGATCACCACCGAGAAGGAATGGCTG 966
|||||||||||||| | ||||| |||||||| || || || | |||| | ||||| |
Sbjct 118267 TACATGGAGCTCGTTAACTGGCTGGTGGAGAACGGCATTACGTCAGAGA-GCAATGGATT 118209
Query 967 CTGGAAAACAGAGAAAGCTTTCGGAGCTTTCAG-GCCTCGAGCAACTCG-GCGCGTCAGA 1024
| ||| ||| || |||| | ||| || || || |||| | || || || |
Sbjct 118208 CAGGAGAACC-AGGAAGCCTGTATCTCTTACAACGCGACGGGCAATGCCCGCTCG-CAAA 118151
Query 1025 TCAAGACGGCCCTGCAAGGCGCCATTCAGGAGATGCTTCTGACCAAGACGGCGGAGGACT 1084
||||| |||| ||| | ||||| | || |||||||||||||| |||||
Sbjct 118150 TCAAGTCGGCTCTGGACAACGCCAGCAAAATCGTGAGCCTGACCAAGACGGCCTCGGACT 118091
Query 1085 ACCTCGTCGGAAAGG-ATCCCGTCTCGGA----CGACGACATCCGTCAGAACCGCATCTA 1139
|||| ||||| | ||| | | || ||| |||| ||| |||||||||
Sbjct 118090 ACCTGGTCGGGTCTGCATCGC----CAGAGCATCGAGGACAACCGCGTCCACCGCATCT- 118036
Query 1140 CAAGATTCTGGAACTGAACCACTACGACCCAGCGTACGTGGGGAGTATTTTGGTCGGGTG 1199
||| | || ||| ||||||||| || || | || | || | || ||
Sbjct 118035 -----TTC---ACCTCAACGGCTACGACCCGGCCTATGCCGGCTCAGTGGTGCTGGGCTG 117984
Query 1200 GTGCCAGAAGAAA-TGGGGCAAGCGAAACACGCTGTGGCTGTTCGGACATGCGACCACCG 1258
||||| ||||||| | ||||||||| ||||| | ||||| || | || |||| |||| |
Sbjct 117983 GTGCC-GAAGAAAGTTGGGCAAGCGGAACACCGTCTGGCTCTTTGCACCTGCGCCCACGG 117925
Query 1259 GCAAGACCAACATCGCGGAGGCTATTGCCCATGCTGTGCCGTTCTATGGATGCGTTAACT 1318
||||||||||||| |||| ||||||||||||||||||||| || ||||| | || ||||
Sbjct 117924 GCAAGACCAACATTGCGGTGGCTATTGCCCATGCTGTGCCCTTTTATGGGCGTGTCAACT 117865
Query 1319 GGACCAACGAGAACTTTCCGTTCAACGACTGCGTCGAAAAAATGATTATCTGGTGGGAGG 1378
|||||| ||||||||||| ||| | || || || || || | | || | ||||||||
Sbjct 117864 GGACCAGCGAGAACTTTCTCTTC-ATGATTGTGTGGACAAGACAGTGATTTTGTGGGAGG 117806
Query 1379 AGGGCAAAATGACCGCCAAAGTGGTGGAAACAGCCAAGGCGATTCTGGGAGGATCTCGG- 1437
||||||| ||||| ||||| || |||| | |||||||| || ||||| | |||||
Sbjct 117805 AGGGCAAGATGACGGCCAAGGTCATGGAGTCGGCCAAGGCCATCCTGGGGG---CTCGGC 117749
Query 1438 -GTGAGAGTGGACCAAAAATGCAAAGCTTCGGTTCCGATCGAACCGACGCCGGTCATTAT 1496
||| |||||||||| |||||| |||| ||| | || ||||| || |||||||| ||
Sbjct 117748 AGTGTGAGTGGACCAGAAATGC-AAGCCTCGCAGCAGACTGAACCCACACCGGTCATCAT 117690
Query 1497 TACCAGTAACACCAACATGTGTTATGTCATCGACGGGAACACGACCACGTTCGAGCATAA 1556
||| |||||||||||||| |||| ||||| ||| ||| || || || || |
Sbjct 117689 CACCTCCAACACCAACATGTGCGTGGTCACTGACGGAAACTCGAAGACCTTTGAACACCA 117630
Query 1557 GCAGCCGTTGGAGGACAGGATGTTTAAGCTCGAATTG-CTGACTCGGTTGCCTGATGACT 1615
|||||||| ||||| | ||||| ||| | ||| || || || || ||| ||||
Sbjct 117629 ACAGCCGTTACAGGACCGCATGTTCAAGTTGGAACTGACTTAC-CGTTTGGAGCCAGACT 117571
Query 1616 TTGGTAAGGTGACCAAACAGGAGGT 1640
|||| || ||||| || | ||||||
Sbjct 117570 TTGGGAAAGTGACTAAGCGGGAGGT 117546
Score = 221 bits (244), Expect = 4e-54
Identities = 425/620 (69%), Gaps = 15/620 (2%)
Strand=Plus/Minus
Query 2915 GGGTGCCGATGGAGTGGGCAATTCCTCCGGAAATTGGCATTGCGATTCCCAATGGCTGGA 2974
||||| ||||| |||||| | ||||| |||||||||| |||| ||||| ||||| |||
Sbjct 116364 GGGTGACGATGCAGTGGGGAGCTCCTCGGGAAATTGGCGTTGCAATTCCAAATGGATGGG 116305
Query 2975 AAACGGAGTCGTCACTCGAA-CCACCCGAACCTGGGTCTTGCCCAGCTACAACAACCACC 3033
||| || |||| ||| || || | ||||||||| |||||| ||||||| ||||||
Sbjct 116304 CAACCACGTGCTCAC-CGAGTCCGCCGGGACCTGGGTCCTGCCCA-CTACAACCACCACC 116247
Query 3034 TGTACAAACGAATCCAAGGACCCAGCGGAGGCNNNNNNNNNNNNNNATT-CTTTGGATTC 3092
|||||| || ||| ||| || || || ||| || | | |
Sbjct 116246 AGTACAAGCGCATC----GACTCAAAGGGAGCCACCAGCAAGGACAATTTCTACAGCTAC 116191
Query 3093 AGCACCCCCTGGGGATACTTTGACTACAATCGATTCCACTGCCACTTTTCCCCGCGAGAC 3152
|| || |||||||||||||||| || || ||||| | | ||||||| || ||||||
Sbjct 116190 TCTACTCCGTGGGGATACTTTGACTTTAA-CGCTTCCAGTACTACTTTTCACCCCGAGAC 116132
Query 3153 TGGCAACGACTCATCAACAACAACTGGGGCATCCGTCCCAAAGCGA-TGCGCTTTAGACT 3211
||||| | || |||| |||| ||||| || | |||| | || | ||| | ||
Sbjct 116131 TGGCAGTGCTTCGTCAAATACAATTGGGGTCTCTGGTCCAA-GAGACTTTCCTTCAAGCT 116073
Query 3212 CTTTAACATCCAGGTTAAAGAGGTCACGGTCCAAGACTTCAACACCACCATCGGCAACAA 3271
|||||| |||||||||| |||||||| || || ||| |||||| ||| ||
Sbjct 116072 GTTTAACGTCCAGGTTAAGGAGGTCACTACGCAGGAGGGAGCCACGACCATCACCAATAA 116013
Query 3272 CCTCACCAGTACGGTCCAGGTCTTTGCGGACAAGGACTACCAACTGCCGTACGTCCTCGG 3331
||||||||| || ||||||||||||||||| ||||||||| | | | |||| || ||
Sbjct 116012 CCTCACCAGCACCATCCAGGTCTTTGCGGACTCGGACTACCAGGTCCTGCACGTGCTAGG 115953
Query 3332 ATCGGCTACCGAAGGCACCTTCCCGCCGTTCCCAGCGGATATCTACACGATCCCGCAGTA 3391
|| ||| || || | || || ||||| || || ||| |||| |||| |||||
Sbjct 115952 CAACGCGCACGAGGGAACGCTGCCTCCCTTCCCGGCCCATGTCTTCACGGTCCCCCAGTA 115893
Query 3392 CGGGTACTGCACGCTAAACTACAACAACGAGGCGGTGGATCGTTCGGC--CTTCTACTGT 3449
|| ||| |||||| ||| || || | || | | ||| | || |||||||||
Sbjct 115892 CGCCTACGACACGCTCAACAACGGGGACAACGCCGCAGCTCG--CAGCAGCTTCTACTGC 115835
Query 3450 CTGGACTACTTTCCCTCAGACATGCTGCGGACAGGAAATAACTTTGAGTTTACTTACACC 3509
|| || ||| | || | |||||||||| || || |||| | | || |||
Sbjct 115834 CTCGAGTACATGCCGAGCCAGATGCTGCGGATGGGCAACAACTACGCCTCCACGTACGAG 115775
Query 3510 TTCGAGGACGTTCCTTTCCA 3529
|| |||||||| || || ||
Sbjct 115774 TTTGAGGACGTACCCTTTCA 115755
Score = 93.3 bits (102), Expect = 1e-15
Identities = 184/270 (68%), Gaps = 3/270 (1%)
Strand=Plus/Minus
Query 2406 GGTCTCGTGTTCCCAGGCTACAATTATCTAGGCCCTTTCAACGGTCTAGATAAAGGAGAA 2465
||||| || | || || || || ||||| || || ||||| ||||| ||||| |||||
Sbjct 116874 GGTCTGGTCCTTCCGGGATATAAATATCTCGGACCGTTCAATGGTCTGGATAAGGGAGAC 116815
Query 2466 CCCGTCAACGAGGCAGACGCTGCCGCCTTAGAACACGACAAGGCTTACGACCTCGAAATC 2525
| |||| |||||||| | ||| |||| |||| | |||| || | | ||
Sbjct 116814 CGGGTCAGTCGCGCAGACGCCGTCGCTCTAGAGCACGTC--GGCT-ACAGCGAGCAGCTC 116758
Query 2526 AAGGACGGGCACAACCCGTACTTTGAGTACAACGAGGCCGACAGACGTTTCCAGGAACGT 2585
||| || ||||||| ||| | ||| |||| | ||||||||| ||||||||
Sbjct 116757 GAGGCGGGAGACAACCCCTACCTCAAGTGCAACCATGCCGACAGAGAATTCCAGGAGAAG 116698
Query 2586 CTCAAAGACGATACCTCCTTTGGAGGCAATTTAGGTAAAGCCATCTTCCAGGCCAAAAAG 2645
| | ||||| |||| ||||| | || | || | ||| |||| ||||||||||||
Sbjct 116697 CACTCTGACGACACCTGTTTTGGGAGAAACCTCGGAAGAGCAGTCTTTCAGGCCAAAAAG 116638
Query 2646 AGGGTTCTCGAACCCTTTGGTCTGGTGGAA 2675
| | || || || ||||| || || |||
Sbjct 116637 CGACTGCTTGAGCCTTTTGGCCTCGTTGAA 116608
>seq615
Length=480679
Score = 288 bits (318), Expect = 3e-74
Identities = 304/398 (76%), Gaps = 2/398 (1%)
Strand=Plus/Plus
Query 1186 ATTTTGGTCGGGTGGTGCCAGAAGAAATGGGGCAAGCGAAACACGCTGTGGCTGTTCGGA 1245
||| || || |||||||||| || || | |||||| | ||| | | ||||| || |||
Sbjct 3920 ATTCTGCTCCGGTGGTGCCAAAA-AAGTTCGGCAAGAGGAACGCCATCTGGCTCTTTGGA 3978
Query 1246 CATGCGACCACCGGCAAGACCAACATCGCGGAGGCTATTGCCCATGCTGTGCCGTTCTAT 1305
| || ||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||
Sbjct 3979 CCTGTGACCACCGGCAAGACCAACATTGCGGAGGCTATTGCCCATGCCGTGCCCTTCTAT 4038
Query 1306 GGATGCGTTAACTGGACCAACGAGAACTTTCCGTTCAACGACTGCGTCGAAAAAATGATT 1365
|| ||||| | ||||||||| ||||| ||||| || ||||||||| | || || ||| |
Sbjct 4039 GGCTGCGTCAGCTGGACCAATGAGAATTTTCCCTT-AACGACTGCATGGACAAGATGGTG 4097
Query 1366 ATCTGGTGGGAGGAGGGCAAAATGACCGCCAAAGTGGTGGAAACAGCCAAGGCGATTCTG 1425
||| ||||||||||| |||| ||||| ||||| || ||||| |||||||||| || |
Sbjct 4098 ATCCGGTGGGAGGAGTGCAAGATGACGGCCAAGGTCGTGGAGTCAGCCAAGGCCATCCGA 4157
Query 1426 GGAGGATCTCGGGTGAGAGTGGACCAAAAATGCAAAGCTTCGGTTCCGATCGAACCGACG 1485
|| || ||| |||| ||| |||| |||||||| | | | | ||| || || ||
Sbjct 4158 GGGGGCTCTACGGTGCAAGTCAACCAGAAATGCAAGTCCTGGCAGCAGATTGACCCCACT 4217
Query 1486 CCGGTCATTATTACCAGTAACACCAACATGTGTTATGTCATCGACGGGAACACGACCACG 1545
| |||||| || ||| ||| |||| |||| ||||||||||||||| | | ||
Sbjct 4218 CTGGTCATCATCACCTCCTACATCAACGTGTGCGTGGTCATCGACGGGAACTCCATGACT 4277
Query 1546 TTCGAGCATAAGCAGCCGTTGGAGGACAGGATGTTTAA 1583
|| || || |||||||| || |||| ||||||| ||
Sbjct 4278 TTTGAACACCAGCAGCCGCTGCAGGATTGGATGTTCAA 4315
Score = 131 bits (144), Expect = 5e-27
Identities = 287/426 (67%), Gaps = 18/426 (4%)
Strand=Plus/Plus
Query 2882 AGGAGGTGGCGGCCCAGTGGGCGATGCAGGCCAGGGTGCCGATGGAGTGGGCAATTCCTC 2941
|||||||||| ||||||| | | || || | || |||| ||||||||| | |||
Sbjct 5588 AGGAGGTGGCTCACCAGTGGACAA--CATGCG-GTGTTCCGACGGAGTGGGCTCTGCCTG 5644
Query 2942 CGGAAATTGGCATTGCGATTCCCAATGGCTGGAAAACGGAGTCGTCACTCGAACCACCCG 3001
| | |||||||| | ||| || |||| ||| | || | ||| | || |||| ||
Sbjct 5645 CAGTGATTGGCATGGAGATACCACATGGATGGGAGACCGTGTCATTACAAAGTCCACACG 5704
Query 3002 AACCTGGGTCTTGCCCAGCTACAACAACCACCTGTACAAACGAATCCAAGGACCCAGCGG 3061
|| || || |||||| ||||||||||||| | |||| || ||| | ||| |||
Sbjct 5705 GACAGGGATCCTGCCCACCTACAACAACCACATCTACAGGCGGATCACCAGCTCCACCGG 5764
Query 3062 AGGCNNNNNNNNNNNNNNATTCTTTGGATTCAGCACCCCCTGGGGATACTTTGACTACAA 3121
| | |||||| | || | || | || ||||||| |||
Sbjct 5765 CATCAGCAACGACAACACCTACTTTGGTT--AGG----CGTGCTG-TATTTTGACTTCAA 5817
Query 3122 TCGATTCCACTGCCACTTTTCCCCGCGAGACTGGCAACGACTCATCAACAACAACTGGGG 3181
|| |||||||||||||||| || ||||||||| | || ||| |||| |||| ||||||
Sbjct 5818 CCGCTTCCACTGCCACTTTTTACCCCGAGACTGGAAGCGTCTCGTCAATAACAGCTGGGG 5877
Query 3182 CATCCGTCCCAAAGCGATGCGCTTT-AGACTCTTTAACATCCAGGTTAAAGAGGTCACG- 3239
||||| || |||| | || ||| | | || | ||| || || || |||||||||
Sbjct 5878 TATCCG-GCCTAAGCAACTCGGTTTCAAGTTATTCACCATACAAGTCAAGGAGGTCACGA 5936
Query 3240 --GTCCAAGACTTCAACACCACCATCGGCAACAACCTCACCAGTACGGTCCAGGTCTTTG 3297
||| || || | ||||||| ||| ||||||||||| || ||||||| ||||
Sbjct 5937 CAGTC---AACAGCACAAAGACCATCGCCAATAACCTCACCAGCACCATCCAGGTGTTTG 5993
Query 3298 CGGACA 3303
|||||
Sbjct 5994 TGGACA 5999
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 14898455319465
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