Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= NC_004828.1 Length=4694 Score E Sequences producing significant alignments: (Bits) Value seq875 306 1e-79 seq615 288 3e-74 >seq875 Length=186252 Score = 306 bits (338), Expect = 1e-79 Identities = 526/745 (71%), Gaps = 34/745 (5%) Strand=Plus/Minus Query 907 TACATGGAGCTCGTGGATTGGCTCGTGGAGAAGGGGATCACCACCGAGAAGGAATGGCTG 966 |||||||||||||| | ||||| |||||||| || || || | |||| | ||||| | Sbjct 118267 TACATGGAGCTCGTTAACTGGCTGGTGGAGAACGGCATTACGTCAGAGA-GCAATGGATT 118209 Query 967 CTGGAAAACAGAGAAAGCTTTCGGAGCTTTCAG-GCCTCGAGCAACTCG-GCGCGTCAGA 1024 | ||| ||| || |||| | ||| || || || |||| | || || || | Sbjct 118208 CAGGAGAACC-AGGAAGCCTGTATCTCTTACAACGCGACGGGCAATGCCCGCTCG-CAAA 118151 Query 1025 TCAAGACGGCCCTGCAAGGCGCCATTCAGGAGATGCTTCTGACCAAGACGGCGGAGGACT 1084 ||||| |||| ||| | ||||| | || |||||||||||||| ||||| Sbjct 118150 TCAAGTCGGCTCTGGACAACGCCAGCAAAATCGTGAGCCTGACCAAGACGGCCTCGGACT 118091 Query 1085 ACCTCGTCGGAAAGG-ATCCCGTCTCGGA----CGACGACATCCGTCAGAACCGCATCTA 1139 |||| ||||| | ||| | | || ||| |||| ||| ||||||||| Sbjct 118090 ACCTGGTCGGGTCTGCATCGC----CAGAGCATCGAGGACAACCGCGTCCACCGCATCT- 118036 Query 1140 CAAGATTCTGGAACTGAACCACTACGACCCAGCGTACGTGGGGAGTATTTTGGTCGGGTG 1199 ||| | || ||| ||||||||| || || | || | || | || || Sbjct 118035 -----TTC---ACCTCAACGGCTACGACCCGGCCTATGCCGGCTCAGTGGTGCTGGGCTG 117984 Query 1200 GTGCCAGAAGAAA-TGGGGCAAGCGAAACACGCTGTGGCTGTTCGGACATGCGACCACCG 1258 ||||| ||||||| | ||||||||| ||||| | ||||| || | || |||| |||| | Sbjct 117983 GTGCC-GAAGAAAGTTGGGCAAGCGGAACACCGTCTGGCTCTTTGCACCTGCGCCCACGG 117925 Query 1259 GCAAGACCAACATCGCGGAGGCTATTGCCCATGCTGTGCCGTTCTATGGATGCGTTAACT 1318 ||||||||||||| |||| ||||||||||||||||||||| || ||||| | || |||| Sbjct 117924 GCAAGACCAACATTGCGGTGGCTATTGCCCATGCTGTGCCCTTTTATGGGCGTGTCAACT 117865 Query 1319 GGACCAACGAGAACTTTCCGTTCAACGACTGCGTCGAAAAAATGATTATCTGGTGGGAGG 1378 |||||| ||||||||||| ||| | || || || || || | | || | |||||||| Sbjct 117864 GGACCAGCGAGAACTTTCTCTTC-ATGATTGTGTGGACAAGACAGTGATTTTGTGGGAGG 117806 Query 1379 AGGGCAAAATGACCGCCAAAGTGGTGGAAACAGCCAAGGCGATTCTGGGAGGATCTCGG- 1437 ||||||| ||||| ||||| || |||| | |||||||| || ||||| | ||||| Sbjct 117805 AGGGCAAGATGACGGCCAAGGTCATGGAGTCGGCCAAGGCCATCCTGGGGG---CTCGGC 117749 Query 1438 -GTGAGAGTGGACCAAAAATGCAAAGCTTCGGTTCCGATCGAACCGACGCCGGTCATTAT 1496 ||| |||||||||| |||||| |||| ||| | || ||||| || |||||||| || Sbjct 117748 AGTGTGAGTGGACCAGAAATGC-AAGCCTCGCAGCAGACTGAACCCACACCGGTCATCAT 117690 Query 1497 TACCAGTAACACCAACATGTGTTATGTCATCGACGGGAACACGACCACGTTCGAGCATAA 1556 ||| |||||||||||||| |||| ||||| ||| ||| || || || || | Sbjct 117689 CACCTCCAACACCAACATGTGCGTGGTCACTGACGGAAACTCGAAGACCTTTGAACACCA 117630 Query 1557 GCAGCCGTTGGAGGACAGGATGTTTAAGCTCGAATTG-CTGACTCGGTTGCCTGATGACT 1615 |||||||| ||||| | ||||| ||| | ||| || || || || ||| |||| Sbjct 117629 ACAGCCGTTACAGGACCGCATGTTCAAGTTGGAACTGACTTAC-CGTTTGGAGCCAGACT 117571 Query 1616 TTGGTAAGGTGACCAAACAGGAGGT 1640 |||| || ||||| || | |||||| Sbjct 117570 TTGGGAAAGTGACTAAGCGGGAGGT 117546 Score = 221 bits (244), Expect = 4e-54 Identities = 425/620 (69%), Gaps = 15/620 (2%) Strand=Plus/Minus Query 2915 GGGTGCCGATGGAGTGGGCAATTCCTCCGGAAATTGGCATTGCGATTCCCAATGGCTGGA 2974 ||||| ||||| |||||| | ||||| |||||||||| |||| ||||| ||||| ||| Sbjct 116364 GGGTGACGATGCAGTGGGGAGCTCCTCGGGAAATTGGCGTTGCAATTCCAAATGGATGGG 116305 Query 2975 AAACGGAGTCGTCACTCGAA-CCACCCGAACCTGGGTCTTGCCCAGCTACAACAACCACC 3033 ||| || |||| ||| || || | ||||||||| |||||| ||||||| |||||| Sbjct 116304 CAACCACGTGCTCAC-CGAGTCCGCCGGGACCTGGGTCCTGCCCA-CTACAACCACCACC 116247 Query 3034 TGTACAAACGAATCCAAGGACCCAGCGGAGGCNNNNNNNNNNNNNNATT-CTTTGGATTC 3092 |||||| || ||| ||| || || || ||| || | | | Sbjct 116246 AGTACAAGCGCATC----GACTCAAAGGGAGCCACCAGCAAGGACAATTTCTACAGCTAC 116191 Query 3093 AGCACCCCCTGGGGATACTTTGACTACAATCGATTCCACTGCCACTTTTCCCCGCGAGAC 3152 || || |||||||||||||||| || || ||||| | | ||||||| || |||||| Sbjct 116190 TCTACTCCGTGGGGATACTTTGACTTTAA-CGCTTCCAGTACTACTTTTCACCCCGAGAC 116132 Query 3153 TGGCAACGACTCATCAACAACAACTGGGGCATCCGTCCCAAAGCGA-TGCGCTTTAGACT 3211 ||||| | || |||| |||| ||||| || | |||| | || | ||| | || Sbjct 116131 TGGCAGTGCTTCGTCAAATACAATTGGGGTCTCTGGTCCAA-GAGACTTTCCTTCAAGCT 116073 Query 3212 CTTTAACATCCAGGTTAAAGAGGTCACGGTCCAAGACTTCAACACCACCATCGGCAACAA 3271 |||||| |||||||||| |||||||| || || ||| |||||| ||| || Sbjct 116072 GTTTAACGTCCAGGTTAAGGAGGTCACTACGCAGGAGGGAGCCACGACCATCACCAATAA 116013 Query 3272 CCTCACCAGTACGGTCCAGGTCTTTGCGGACAAGGACTACCAACTGCCGTACGTCCTCGG 3331 ||||||||| || ||||||||||||||||| ||||||||| | | | |||| || || Sbjct 116012 CCTCACCAGCACCATCCAGGTCTTTGCGGACTCGGACTACCAGGTCCTGCACGTGCTAGG 115953 Query 3332 ATCGGCTACCGAAGGCACCTTCCCGCCGTTCCCAGCGGATATCTACACGATCCCGCAGTA 3391 || ||| || || | || || ||||| || || ||| |||| |||| ||||| Sbjct 115952 CAACGCGCACGAGGGAACGCTGCCTCCCTTCCCGGCCCATGTCTTCACGGTCCCCCAGTA 115893 Query 3392 CGGGTACTGCACGCTAAACTACAACAACGAGGCGGTGGATCGTTCGGC--CTTCTACTGT 3449 || ||| |||||| ||| || || | || | | ||| | || ||||||||| Sbjct 115892 CGCCTACGACACGCTCAACAACGGGGACAACGCCGCAGCTCG--CAGCAGCTTCTACTGC 115835 Query 3450 CTGGACTACTTTCCCTCAGACATGCTGCGGACAGGAAATAACTTTGAGTTTACTTACACC 3509 || || ||| | || | |||||||||| || || |||| | | || ||| Sbjct 115834 CTCGAGTACATGCCGAGCCAGATGCTGCGGATGGGCAACAACTACGCCTCCACGTACGAG 115775 Query 3510 TTCGAGGACGTTCCTTTCCA 3529 || |||||||| || || || Sbjct 115774 TTTGAGGACGTACCCTTTCA 115755 Score = 93.3 bits (102), Expect = 1e-15 Identities = 184/270 (68%), Gaps = 3/270 (1%) Strand=Plus/Minus Query 2406 GGTCTCGTGTTCCCAGGCTACAATTATCTAGGCCCTTTCAACGGTCTAGATAAAGGAGAA 2465 ||||| || | || || || || ||||| || || ||||| ||||| ||||| ||||| Sbjct 116874 GGTCTGGTCCTTCCGGGATATAAATATCTCGGACCGTTCAATGGTCTGGATAAGGGAGAC 116815 Query 2466 CCCGTCAACGAGGCAGACGCTGCCGCCTTAGAACACGACAAGGCTTACGACCTCGAAATC 2525 | |||| |||||||| | ||| |||| |||| | |||| || | | || Sbjct 116814 CGGGTCAGTCGCGCAGACGCCGTCGCTCTAGAGCACGTC--GGCT-ACAGCGAGCAGCTC 116758 Query 2526 AAGGACGGGCACAACCCGTACTTTGAGTACAACGAGGCCGACAGACGTTTCCAGGAACGT 2585 ||| || ||||||| ||| | ||| |||| | ||||||||| |||||||| Sbjct 116757 GAGGCGGGAGACAACCCCTACCTCAAGTGCAACCATGCCGACAGAGAATTCCAGGAGAAG 116698 Query 2586 CTCAAAGACGATACCTCCTTTGGAGGCAATTTAGGTAAAGCCATCTTCCAGGCCAAAAAG 2645 | | ||||| |||| ||||| | || | || | ||| |||| |||||||||||| Sbjct 116697 CACTCTGACGACACCTGTTTTGGGAGAAACCTCGGAAGAGCAGTCTTTCAGGCCAAAAAG 116638 Query 2646 AGGGTTCTCGAACCCTTTGGTCTGGTGGAA 2675 | | || || || ||||| || || ||| Sbjct 116637 CGACTGCTTGAGCCTTTTGGCCTCGTTGAA 116608 >seq615 Length=480679 Score = 288 bits (318), Expect = 3e-74 Identities = 304/398 (76%), Gaps = 2/398 (1%) Strand=Plus/Plus Query 1186 ATTTTGGTCGGGTGGTGCCAGAAGAAATGGGGCAAGCGAAACACGCTGTGGCTGTTCGGA 1245 ||| || || |||||||||| || || | |||||| | ||| | | ||||| || ||| Sbjct 3920 ATTCTGCTCCGGTGGTGCCAAAA-AAGTTCGGCAAGAGGAACGCCATCTGGCTCTTTGGA 3978 Query 1246 CATGCGACCACCGGCAAGACCAACATCGCGGAGGCTATTGCCCATGCTGTGCCGTTCTAT 1305 | || ||||||||||||||||||||| |||||||||||||||||||| ||||| |||||| Sbjct 3979 CCTGTGACCACCGGCAAGACCAACATTGCGGAGGCTATTGCCCATGCCGTGCCCTTCTAT 4038 Query 1306 GGATGCGTTAACTGGACCAACGAGAACTTTCCGTTCAACGACTGCGTCGAAAAAATGATT 1365 || ||||| | ||||||||| ||||| ||||| || ||||||||| | || || ||| | Sbjct 4039 GGCTGCGTCAGCTGGACCAATGAGAATTTTCCCTT-AACGACTGCATGGACAAGATGGTG 4097 Query 1366 ATCTGGTGGGAGGAGGGCAAAATGACCGCCAAAGTGGTGGAAACAGCCAAGGCGATTCTG 1425 ||| ||||||||||| |||| ||||| ||||| || ||||| |||||||||| || | Sbjct 4098 ATCCGGTGGGAGGAGTGCAAGATGACGGCCAAGGTCGTGGAGTCAGCCAAGGCCATCCGA 4157 Query 1426 GGAGGATCTCGGGTGAGAGTGGACCAAAAATGCAAAGCTTCGGTTCCGATCGAACCGACG 1485 || || ||| |||| ||| |||| |||||||| | | | | ||| || || || Sbjct 4158 GGGGGCTCTACGGTGCAAGTCAACCAGAAATGCAAGTCCTGGCAGCAGATTGACCCCACT 4217 Query 1486 CCGGTCATTATTACCAGTAACACCAACATGTGTTATGTCATCGACGGGAACACGACCACG 1545 | |||||| || ||| ||| |||| |||| ||||||||||||||| | | || Sbjct 4218 CTGGTCATCATCACCTCCTACATCAACGTGTGCGTGGTCATCGACGGGAACTCCATGACT 4277 Query 1546 TTCGAGCATAAGCAGCCGTTGGAGGACAGGATGTTTAA 1583 || || || |||||||| || |||| ||||||| || Sbjct 4278 TTTGAACACCAGCAGCCGCTGCAGGATTGGATGTTCAA 4315 Score = 131 bits (144), Expect = 5e-27 Identities = 287/426 (67%), Gaps = 18/426 (4%) Strand=Plus/Plus Query 2882 AGGAGGTGGCGGCCCAGTGGGCGATGCAGGCCAGGGTGCCGATGGAGTGGGCAATTCCTC 2941 |||||||||| ||||||| | | || || | || |||| ||||||||| | ||| Sbjct 5588 AGGAGGTGGCTCACCAGTGGACAA--CATGCG-GTGTTCCGACGGAGTGGGCTCTGCCTG 5644 Query 2942 CGGAAATTGGCATTGCGATTCCCAATGGCTGGAAAACGGAGTCGTCACTCGAACCACCCG 3001 | | |||||||| | ||| || |||| ||| | || | ||| | || |||| || Sbjct 5645 CAGTGATTGGCATGGAGATACCACATGGATGGGAGACCGTGTCATTACAAAGTCCACACG 5704 Query 3002 AACCTGGGTCTTGCCCAGCTACAACAACCACCTGTACAAACGAATCCAAGGACCCAGCGG 3061 || || || |||||| ||||||||||||| | |||| || ||| | ||| ||| Sbjct 5705 GACAGGGATCCTGCCCACCTACAACAACCACATCTACAGGCGGATCACCAGCTCCACCGG 5764 Query 3062 AGGCNNNNNNNNNNNNNNATTCTTTGGATTCAGCACCCCCTGGGGATACTTTGACTACAA 3121 | | |||||| | || | || | || ||||||| ||| Sbjct 5765 CATCAGCAACGACAACACCTACTTTGGTT--AGG----CGTGCTG-TATTTTGACTTCAA 5817 Query 3122 TCGATTCCACTGCCACTTTTCCCCGCGAGACTGGCAACGACTCATCAACAACAACTGGGG 3181 || |||||||||||||||| || ||||||||| | || ||| |||| |||| |||||| Sbjct 5818 CCGCTTCCACTGCCACTTTTTACCCCGAGACTGGAAGCGTCTCGTCAATAACAGCTGGGG 5877 Query 3182 CATCCGTCCCAAAGCGATGCGCTTT-AGACTCTTTAACATCCAGGTTAAAGAGGTCACG- 3239 ||||| || |||| | || ||| | | || | ||| || || || ||||||||| Sbjct 5878 TATCCG-GCCTAAGCAACTCGGTTTCAAGTTATTCACCATACAAGTCAAGGAGGTCACGA 5936 Query 3240 --GTCCAAGACTTCAACACCACCATCGGCAACAACCTCACCAGTACGGTCCAGGTCTTTG 3297 ||| || || | ||||||| ||| ||||||||||| || ||||||| |||| Sbjct 5937 CAGTC---AACAGCACAAAGACCATCGCCAATAACCTCACCAGCACCATCCAGGTGTTTG 5993 Query 3298 CGGACA 3303 ||||| Sbjct 5994 TGGACA 5999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14898455319465