Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= NC_006147.2 Length=5132 Score E Sequences producing significant alignments: (Bits) Value seq615 181 3e-42 seq875 138 4e-29 >seq615 Length=480679 Score = 181 bits (200), Expect = 3e-42 Identities = 198/262 (76%), Gaps = 1/262 (0%) Strand=Plus/Plus Query 1510 GGTGAAAAGAGAATTCAACAAAAGAAATGCCATATGGCTCTACGGACCTGCGACCACCGG 1569 |||| || | | ||| ||| || || ||||| ||||||| ||||||| ||||||||| Sbjct 3933 GGTGCCAAAAAAGTTCGGCAAGAGGAACGCCATCTGGCTCTTTGGACCTGTGACCACCGG 3992 Query 1570 AAAGACCAACATAGCCGAGGCTATTGCCCATGCTGTACCCTTCTATGGCTGTGTTAACTG 1629 ||||||||||| || ||||||||||||||||| || |||||||||||||| || | ||| Sbjct 3993 CAAGACCAACATTGCGGAGGCTATTGCCCATGCCGTGCCCTTCTATGGCTGCGTCAGCTG 4052 Query 1630 GACTAATGAGAACTTCCCATTTAATGACTGCGTTGATAAAATGCTTATATGGTGGGAGGA 1689 ||| |||||||| || || |||| |||||| | || || ||| | || |||||||||| Sbjct 4053 GACCAATGAGAATTTTCC-CTTAACGACTGCATGGACAAGATGGTGATCCGGTGGGAGGA 4111 Query 1690 GGGAAAAATGACCAATAAAGTAGTGGAATCCGCAAAAGCGATACTgggggggTCTGCTGT 1749 | | || ||||| || || ||||| || || || || || | ||||| ||| | || Sbjct 4112 GTGCAAGATGACGGCCAAGGTCGTGGAGTCAGCCAAGGCCATCCGAGGGGGCTCTACGGT 4171 Query 1750 ACGAGTTGATCAAAAGTGTAAG 1771 | ||| | || || || ||| Sbjct 4172 GCAAGTCAACCAGAAATGCAAG 4193 Score = 118 bits (130), Expect = 3e-23 Identities = 260/383 (68%), Gaps = 19/383 (5%) Strand=Plus/Plus Query 3084 GGGGTGCCGATGGAGTGGGTAATGCCTCAGGAAATTGGCATTGCGATTCCCAATGGCTGG 3143 || || |||| |||||||| ||||| | |||||||| | ||| || |||| ||| Sbjct 5617 GGTGTTCCGACGGAGTGGGCTCTGCCTGCAGTGATTGGCATGGAGATACCACATGGATGG 5676 Query 3144 GAGACACAGTCATTACCAAGACTACAAGAACCTGGGTCCTGCCAAGCTACAACAACCACA 3203 ||||| |||||||| ||| | ||| | || || ||||||| | |||||||||||||| Sbjct 5677 GAGACCGTGTCATTACAAAGTCCACACGGACAGGGATCCTGCCCACCTACAACAACCACA 5736 Query 3204 TGTACCAAGCC-ATCACAAGCGGAACAAACC-CAG--ACTCAAATACCCAATATGCTGGA 3259 | ||| | || ||||| ||| || | ||| || || ||| | | || | Sbjct 5737 TCTAC-AGGCGGATCACCAGCTCCACCGGCATCAGCAACGACAACACCTACTTTGGTT-- 5793 Query 3260 TACAGCACCCCCTGGGGGTACTTTGATTTCAACAGATTCCACTGCCATTTCTCTCCAAGA 3319 || | | ||| ||||| |||||| | ||||||||||| || | || || Sbjct 5794 ---AGG-----CGTGCTGTATTTTGACTTCAACCGCTTCCACTGCCACTTTTTACCCCGA 5845 Query 3320 GACTGGCAGAGACTCATCAACAACCATTGGGGGATTAGACCGAAAGCACTCAAATTCAAG 3379 |||||| || | ||| |||| ||| ||||| || | || || |||| |||||| Sbjct 5846 GACTGGAAGCGTCTCGTCAATAACAGCTGGGGTATCCGGCCTAAGCAACTCGGTTTCAAG 5905 Query 3380 ATATTCAATGTGCAAGTTAAAGAAGTCACGAC--GCAAGACCAGACAAAGACTATTGCTA 3437 |||||| | ||||| || || |||||||| ||| | | |||||||| || || | Sbjct 5906 TTATTCACCATACAAGTCAAGGAGGTCACGACAGTCAACAGC--ACAAAGACCATCGCCA 5963 Query 3438 ACAACCTTACCTCTACAATCCAG 3460 | ||||| ||| || |||||| Sbjct 5964 ATAACCTCACCAGCACCATCCAG 5986 >seq875 Length=186252 Score = 138 bits (152), Expect = 4e-29 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 1544 TGGCTCTACGGACCTGCGACCACCGGAAAGACCAACATAGCCGAGGCTATTGCCCATGCT 1603 ||||||| | ||||||| |||| || ||||||||||| || | |||||||||||||||| Sbjct 117949 TGGCTCTTTGCACCTGCGCCCACGGGCAAGACCAACATTGCGGTGGCTATTGCCCATGCT 117890 Query 1604 GTACCCTTCTATGGCTGTGTTAACTGGACTAATGAGAACTTCCCATTTAATGACTGCGTT 1663 || ||||| ||||| |||| |||||||| | |||||||| | || |||| || || Sbjct 117889 GTGCCCTTTTATGGGCGTGTCAACTGGACCAGCGAGAACTT-TCTCTTCATGATTGTGTG 117831 Query 1664 GATAAAATGCTTATATGGTGGGAGGAGGGAAAAATGACCAATAAAGTAGTGGAATCCGCA 1723 || || | | || | |||||||||||| || ||||| || || |||| || || Sbjct 117830 GACAAGACAGTGATTTTGTGGGAGGAGGGCAAGATGACGGCCAAGGTCATGGAGTCGGCC 117771 Query 1724 AAAGCGATACTgggggggTCTGCTGTACGAGTTGATCAAAAGTGTAAG 1771 || || || || ||||| || || || |||| || || || || ||| Sbjct 117770 AAGGCCATCCT-GGGGGCTCGGCAGTGTGAGTGGACCAGAAATGCAAG 117724 Score = 131 bits (144), Expect = 5e-27 Identities = 421/634 (66%), Gaps = 32/634 (5%) Strand=Plus/Minus Query 3084 GGGGTGCCGATGGAGTGGGTAATGCCTCAGGAAATTGGCATTGCGATTCCCAATGGCTGG 3143 |||||| ||||| |||||| | |||| |||||||||| |||| ||||| ||||| ||| Sbjct 116365 GGGGTGACGATGCAGTGGGGAGCTCCTCGGGAAATTGGCGTTGCAATTCCAAATGGATGG 116306 Query 3144 GAGACACAGTCATTACCAAGACTACAAGAACCTGGGTCCTGCCAAGCTACAACAACCACA 3203 | || || | ||| || | | | |||||||||||||| | ||||||| ||||| Sbjct 116305 GCAACCACGTGCTCACCGAGTCCGCCGGGACCTGGGTCCTGCCCA-CTACAACCACCACC 116247 Query 3204 TGTACCAAGC-CAT---CACAAGCGGAACAAACCCAGACTCAAATACCCAATATGCT--G 3257 ||| ||||| ||| | ||| ||| | | |||| ||| | |||| | || Sbjct 116246 AGTA-CAAGCGCATCGACTCAAAGGGAGCCA--CCAG---CAAGGA--CAAT-TTCTACA 116196 Query 3258 GATACAGCACCCCCTGGGGGTACTTTGATTTCAACAGATTCCACTGCCATTTCTCTCCAA 3317 | ||| || || ||||| |||||||| || ||| | ||||| | | | || || || Sbjct 116195 GCTACTCTACTCCGTGGGGATACTTTGACTTTAAC-GCTTCCAGTACTACTTTTCACCCC 116137 Query 3318 GAGACTGGCAGAGACTCATCAACAACCATTGGGGGAT-TAGACCGAAAGCACTCAAATTC 3376 ||||||||||| | || |||| || ||||||| | | | || | || ||| ||| Sbjct 116136 GAGACTGGCAGTGCTTCGTCAAATACAATTGGGGTCTCTGGTCCAAGAG-ACTTTCCTTC 116078 Query 3377 AAGATATTCAATGTGCAAGTTAAAGAAGTCACGACGCAAGACCAGACAAAGACTATTGCT 3436 ||| | || || || || ||||| || ||||| ||||| || | | ||| || | Sbjct 116077 AAGCTGTTTAACGTCCAGGTTAAGGAGGTCACTACGCAGGAGGGAGCCACGACCATCACC 116018 Query 3437 AACAACCTTACCTCTACAATCCAGATATTCACGGATAATGAACACCAGCTGCCCTATGTT 3496 || ||||| ||| || |||||| | || |||| || ||||| | | | || Sbjct 116017 AATAACCTCACCAGCACCATCCAGGTCTTTGCGGACTCGGACTACCAGGTCCTGCACGTG 115958 Query 3497 CTGGGC-TCGGCCACGGAGGGGACGATGCCACCGTTCCCCTCAGATGTGTATGCCTTGCC 3555 || ||| || ||| ||||| ||| |||| || ||||| | |||| | | | || Sbjct 115957 CTAGGCAACGCGCAC-GAGGGAACGCTGCCTCCCTTCCCGGCCCATGTCTTCACGGTCCC 115899 Query 3556 CCAGTACGGCTACTGCACAATGCACACCAACCAGAGTGGAGCGAGATTCA-ATGACAGAA 3614 |||||||| |||| ||| || || |||| | ||| | || | ||| | Sbjct 115898 CCAGTACGCCTACGACAC---GCTCAACAAC----GGGGACAACGCCGCAGCTCGCAGCA 115846 Query 3615 GTGCCTTCTATTGCTTAGAGTACTTCCCCAGTCAGATGCTGAGAACAGGGAATAATTTTG 3674 | |||||| ||| | |||||| | || || ||||||||| | | || || || | | Sbjct 115845 G---CTTCTACTGCCTCGAGTACATGCCGAGCCAGATGCTGCGGATGGGCAACAACTACG 115789 Query 3675 AATTCAGTTTTGAGTTTGAAGAAGTTCCCTTCCA 3708 | || | |||||||| || || ||||| || Sbjct 115788 CCTCCACGTACGAGTTTGAGGACGTACCCTTTCA 115755 Score = 87.8 bits (96), Expect = 6e-14 Identities = 186/273 (68%), Gaps = 5/273 (2%) Strand=Plus/Minus Query 2601 GGGGCTTTGTACTTCCTGGCTATAAGTATGTTGGGCCTGGTAACGGCCTTGATAAAGGGC 2660 |||| | || ||||| || ||||| ||| | || || || || || ||||| ||| Sbjct 116876 GGGGTCTGGTCCTTCCGGGATATAAATATCTCGGACCGTTCAATGGTCTGGATAA-GGGA 116818 Query 2661 CACCTG-TCAATAAAGCGGACAGCGTCGCGCTTGAGCACGATAAAGCGTACGACCAGCAG 2719 ||| | ||| | || ||| |||||| || ||||||| || ||| | ||||| Sbjct 116817 GACCGGGTCAGTCGCGCAGACGCCGTCGCTCTAGAGCACGTCG--GC-TACAGCGAGCAG 116761 Query 2720 CTCAAGGCAGGAGACAACCCCTATATAAAATTTAAGCACGCAGATCAAGAATTTATAGAT 2779 ||| |||| |||||||||||||| | || | || || || || |||||| || Sbjct 116760 CTCGAGGCGGGAGACAACCCCTACCTCAAGTGCAACCATGCCGACAGAGAATTCCAGGAG 116701 Query 2780 AATCTGCAAGGTGATACCTCCTTTGGAGGCAACCTCGGAAAAGCCGTATTCCAAGCTaaa 2839 || | | || |||| ||||| | |||||||||| ||| || || || || ||| Sbjct 116700 AAGCACTCTGACGACACCTGTTTTGGGAGAAACCTCGGAAGAGCAGTCTTTCAGGCCAAA 116641 Query 2840 aaaaGAATTCTAGAGCCTTTAGGCCTAGTAGAA 2872 || || | || |||||||| ||||| || ||| Sbjct 116640 AAGCGACTGCTTGAGCCTTTTGGCCTCGTTGAA 116608 Score = 78.8 bits (86), Expect = 3e-11 Identities = 119/167 (71%), Gaps = 2/167 (1%) Strand=Plus/Minus Query 4247 GGCATGGTCTGGCAGAACAGAGATATTTACCTGCAGGGTCCTATATGGGCTAAAATACCC 4306 |||||||||||||||||| | | |||||||||||||| || || ||||| || || ||| Sbjct 115252 GGCATGGTCTGGCAGAACCGCGGCATTTACCTGCAGGGCCCGATCTGGGCCAAGATTCCC 115193 Query 4307 AAAACAGATGGGAAACCCCATCCTTCTCCAAACCTGGGAGGTTTTGGTCTCCATAATCCA 4366 | |||| || | ||| || || || | ||||||| || || | || | | Sbjct 115192 CACACAGGCGGCAGCTTCCACCCGTCCCCGCTCATGGGAGGATTCGG-GTTCAGGAAGCT 115134 Query 4367 CCTCCCCAGGTCTTTATTAAAAATACTCCTGTTCCTGCAGATCCTCC 4413 ||||| ||| || | || ||||||| | ||||| || ||||||| Sbjct 115133 CCTCCTCAGATC-TCATAAAAAATATGCTGGTTCCCGCCAATCCTCC 115088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16299082799595