Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04]
63,439 sequences; 2,073,344,508 total letters
Query= NC_006147.2
Length=5132
Score E
Sequences producing significant alignments: (Bits) Value
seq615 181 3e-42
seq875 138 4e-29
>seq615
Length=480679
Score = 181 bits (200), Expect = 3e-42
Identities = 198/262 (76%), Gaps = 1/262 (0%)
Strand=Plus/Plus
Query 1510 GGTGAAAAGAGAATTCAACAAAAGAAATGCCATATGGCTCTACGGACCTGCGACCACCGG 1569
|||| || | | ||| ||| || || ||||| ||||||| ||||||| |||||||||
Sbjct 3933 GGTGCCAAAAAAGTTCGGCAAGAGGAACGCCATCTGGCTCTTTGGACCTGTGACCACCGG 3992
Query 1570 AAAGACCAACATAGCCGAGGCTATTGCCCATGCTGTACCCTTCTATGGCTGTGTTAACTG 1629
||||||||||| || ||||||||||||||||| || |||||||||||||| || | |||
Sbjct 3993 CAAGACCAACATTGCGGAGGCTATTGCCCATGCCGTGCCCTTCTATGGCTGCGTCAGCTG 4052
Query 1630 GACTAATGAGAACTTCCCATTTAATGACTGCGTTGATAAAATGCTTATATGGTGGGAGGA 1689
||| |||||||| || || |||| |||||| | || || ||| | || ||||||||||
Sbjct 4053 GACCAATGAGAATTTTCC-CTTAACGACTGCATGGACAAGATGGTGATCCGGTGGGAGGA 4111
Query 1690 GGGAAAAATGACCAATAAAGTAGTGGAATCCGCAAAAGCGATACTgggggggTCTGCTGT 1749
| | || ||||| || || ||||| || || || || || | ||||| ||| | ||
Sbjct 4112 GTGCAAGATGACGGCCAAGGTCGTGGAGTCAGCCAAGGCCATCCGAGGGGGCTCTACGGT 4171
Query 1750 ACGAGTTGATCAAAAGTGTAAG 1771
| ||| | || || || |||
Sbjct 4172 GCAAGTCAACCAGAAATGCAAG 4193
Score = 118 bits (130), Expect = 3e-23
Identities = 260/383 (68%), Gaps = 19/383 (5%)
Strand=Plus/Plus
Query 3084 GGGGTGCCGATGGAGTGGGTAATGCCTCAGGAAATTGGCATTGCGATTCCCAATGGCTGG 3143
|| || |||| |||||||| ||||| | |||||||| | ||| || |||| |||
Sbjct 5617 GGTGTTCCGACGGAGTGGGCTCTGCCTGCAGTGATTGGCATGGAGATACCACATGGATGG 5676
Query 3144 GAGACACAGTCATTACCAAGACTACAAGAACCTGGGTCCTGCCAAGCTACAACAACCACA 3203
||||| |||||||| ||| | ||| | || || ||||||| | ||||||||||||||
Sbjct 5677 GAGACCGTGTCATTACAAAGTCCACACGGACAGGGATCCTGCCCACCTACAACAACCACA 5736
Query 3204 TGTACCAAGCC-ATCACAAGCGGAACAAACC-CAG--ACTCAAATACCCAATATGCTGGA 3259
| ||| | || ||||| ||| || | ||| || || ||| | | || |
Sbjct 5737 TCTAC-AGGCGGATCACCAGCTCCACCGGCATCAGCAACGACAACACCTACTTTGGTT-- 5793
Query 3260 TACAGCACCCCCTGGGGGTACTTTGATTTCAACAGATTCCACTGCCATTTCTCTCCAAGA 3319
|| | | ||| ||||| |||||| | ||||||||||| || | || ||
Sbjct 5794 ---AGG-----CGTGCTGTATTTTGACTTCAACCGCTTCCACTGCCACTTTTTACCCCGA 5845
Query 3320 GACTGGCAGAGACTCATCAACAACCATTGGGGGATTAGACCGAAAGCACTCAAATTCAAG 3379
|||||| || | ||| |||| ||| ||||| || | || || |||| ||||||
Sbjct 5846 GACTGGAAGCGTCTCGTCAATAACAGCTGGGGTATCCGGCCTAAGCAACTCGGTTTCAAG 5905
Query 3380 ATATTCAATGTGCAAGTTAAAGAAGTCACGAC--GCAAGACCAGACAAAGACTATTGCTA 3437
|||||| | ||||| || || |||||||| ||| | | |||||||| || || |
Sbjct 5906 TTATTCACCATACAAGTCAAGGAGGTCACGACAGTCAACAGC--ACAAAGACCATCGCCA 5963
Query 3438 ACAACCTTACCTCTACAATCCAG 3460
| ||||| ||| || ||||||
Sbjct 5964 ATAACCTCACCAGCACCATCCAG 5986
>seq875
Length=186252
Score = 138 bits (152), Expect = 4e-29
Identities = 169/228 (74%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 1544 TGGCTCTACGGACCTGCGACCACCGGAAAGACCAACATAGCCGAGGCTATTGCCCATGCT 1603
||||||| | ||||||| |||| || ||||||||||| || | ||||||||||||||||
Sbjct 117949 TGGCTCTTTGCACCTGCGCCCACGGGCAAGACCAACATTGCGGTGGCTATTGCCCATGCT 117890
Query 1604 GTACCCTTCTATGGCTGTGTTAACTGGACTAATGAGAACTTCCCATTTAATGACTGCGTT 1663
|| ||||| ||||| |||| |||||||| | |||||||| | || |||| || ||
Sbjct 117889 GTGCCCTTTTATGGGCGTGTCAACTGGACCAGCGAGAACTT-TCTCTTCATGATTGTGTG 117831
Query 1664 GATAAAATGCTTATATGGTGGGAGGAGGGAAAAATGACCAATAAAGTAGTGGAATCCGCA 1723
|| || | | || | |||||||||||| || ||||| || || |||| || ||
Sbjct 117830 GACAAGACAGTGATTTTGTGGGAGGAGGGCAAGATGACGGCCAAGGTCATGGAGTCGGCC 117771
Query 1724 AAAGCGATACTgggggggTCTGCTGTACGAGTTGATCAAAAGTGTAAG 1771
|| || || || ||||| || || || |||| || || || || |||
Sbjct 117770 AAGGCCATCCT-GGGGGCTCGGCAGTGTGAGTGGACCAGAAATGCAAG 117724
Score = 131 bits (144), Expect = 5e-27
Identities = 421/634 (66%), Gaps = 32/634 (5%)
Strand=Plus/Minus
Query 3084 GGGGTGCCGATGGAGTGGGTAATGCCTCAGGAAATTGGCATTGCGATTCCCAATGGCTGG 3143
|||||| ||||| |||||| | |||| |||||||||| |||| ||||| ||||| |||
Sbjct 116365 GGGGTGACGATGCAGTGGGGAGCTCCTCGGGAAATTGGCGTTGCAATTCCAAATGGATGG 116306
Query 3144 GAGACACAGTCATTACCAAGACTACAAGAACCTGGGTCCTGCCAAGCTACAACAACCACA 3203
| || || | ||| || | | | |||||||||||||| | ||||||| |||||
Sbjct 116305 GCAACCACGTGCTCACCGAGTCCGCCGGGACCTGGGTCCTGCCCA-CTACAACCACCACC 116247
Query 3204 TGTACCAAGC-CAT---CACAAGCGGAACAAACCCAGACTCAAATACCCAATATGCT--G 3257
||| ||||| ||| | ||| ||| | | |||| ||| | |||| | ||
Sbjct 116246 AGTA-CAAGCGCATCGACTCAAAGGGAGCCA--CCAG---CAAGGA--CAAT-TTCTACA 116196
Query 3258 GATACAGCACCCCCTGGGGGTACTTTGATTTCAACAGATTCCACTGCCATTTCTCTCCAA 3317
| ||| || || ||||| |||||||| || ||| | ||||| | | | || || ||
Sbjct 116195 GCTACTCTACTCCGTGGGGATACTTTGACTTTAAC-GCTTCCAGTACTACTTTTCACCCC 116137
Query 3318 GAGACTGGCAGAGACTCATCAACAACCATTGGGGGAT-TAGACCGAAAGCACTCAAATTC 3376
||||||||||| | || |||| || ||||||| | | | || | || ||| |||
Sbjct 116136 GAGACTGGCAGTGCTTCGTCAAATACAATTGGGGTCTCTGGTCCAAGAG-ACTTTCCTTC 116078
Query 3377 AAGATATTCAATGTGCAAGTTAAAGAAGTCACGACGCAAGACCAGACAAAGACTATTGCT 3436
||| | || || || || ||||| || ||||| ||||| || | | ||| || |
Sbjct 116077 AAGCTGTTTAACGTCCAGGTTAAGGAGGTCACTACGCAGGAGGGAGCCACGACCATCACC 116018
Query 3437 AACAACCTTACCTCTACAATCCAGATATTCACGGATAATGAACACCAGCTGCCCTATGTT 3496
|| ||||| ||| || |||||| | || |||| || ||||| | | | ||
Sbjct 116017 AATAACCTCACCAGCACCATCCAGGTCTTTGCGGACTCGGACTACCAGGTCCTGCACGTG 115958
Query 3497 CTGGGC-TCGGCCACGGAGGGGACGATGCCACCGTTCCCCTCAGATGTGTATGCCTTGCC 3555
|| ||| || ||| ||||| ||| |||| || ||||| | |||| | | | ||
Sbjct 115957 CTAGGCAACGCGCAC-GAGGGAACGCTGCCTCCCTTCCCGGCCCATGTCTTCACGGTCCC 115899
Query 3556 CCAGTACGGCTACTGCACAATGCACACCAACCAGAGTGGAGCGAGATTCA-ATGACAGAA 3614
|||||||| |||| ||| || || |||| | ||| | || | ||| |
Sbjct 115898 CCAGTACGCCTACGACAC---GCTCAACAAC----GGGGACAACGCCGCAGCTCGCAGCA 115846
Query 3615 GTGCCTTCTATTGCTTAGAGTACTTCCCCAGTCAGATGCTGAGAACAGGGAATAATTTTG 3674
| |||||| ||| | |||||| | || || ||||||||| | | || || || | |
Sbjct 115845 G---CTTCTACTGCCTCGAGTACATGCCGAGCCAGATGCTGCGGATGGGCAACAACTACG 115789
Query 3675 AATTCAGTTTTGAGTTTGAAGAAGTTCCCTTCCA 3708
| || | |||||||| || || ||||| ||
Sbjct 115788 CCTCCACGTACGAGTTTGAGGACGTACCCTTTCA 115755
Score = 87.8 bits (96), Expect = 6e-14
Identities = 186/273 (68%), Gaps = 5/273 (2%)
Strand=Plus/Minus
Query 2601 GGGGCTTTGTACTTCCTGGCTATAAGTATGTTGGGCCTGGTAACGGCCTTGATAAAGGGC 2660
|||| | || ||||| || ||||| ||| | || || || || || ||||| |||
Sbjct 116876 GGGGTCTGGTCCTTCCGGGATATAAATATCTCGGACCGTTCAATGGTCTGGATAA-GGGA 116818
Query 2661 CACCTG-TCAATAAAGCGGACAGCGTCGCGCTTGAGCACGATAAAGCGTACGACCAGCAG 2719
||| | ||| | || ||| |||||| || ||||||| || ||| | |||||
Sbjct 116817 GACCGGGTCAGTCGCGCAGACGCCGTCGCTCTAGAGCACGTCG--GC-TACAGCGAGCAG 116761
Query 2720 CTCAAGGCAGGAGACAACCCCTATATAAAATTTAAGCACGCAGATCAAGAATTTATAGAT 2779
||| |||| |||||||||||||| | || | || || || || |||||| ||
Sbjct 116760 CTCGAGGCGGGAGACAACCCCTACCTCAAGTGCAACCATGCCGACAGAGAATTCCAGGAG 116701
Query 2780 AATCTGCAAGGTGATACCTCCTTTGGAGGCAACCTCGGAAAAGCCGTATTCCAAGCTaaa 2839
|| | | || |||| ||||| | |||||||||| ||| || || || || |||
Sbjct 116700 AAGCACTCTGACGACACCTGTTTTGGGAGAAACCTCGGAAGAGCAGTCTTTCAGGCCAAA 116641
Query 2840 aaaaGAATTCTAGAGCCTTTAGGCCTAGTAGAA 2872
|| || | || |||||||| ||||| || |||
Sbjct 116640 AAGCGACTGCTTGAGCCTTTTGGCCTCGTTGAA 116608
Score = 78.8 bits (86), Expect = 3e-11
Identities = 119/167 (71%), Gaps = 2/167 (1%)
Strand=Plus/Minus
Query 4247 GGCATGGTCTGGCAGAACAGAGATATTTACCTGCAGGGTCCTATATGGGCTAAAATACCC 4306
|||||||||||||||||| | | |||||||||||||| || || ||||| || || |||
Sbjct 115252 GGCATGGTCTGGCAGAACCGCGGCATTTACCTGCAGGGCCCGATCTGGGCCAAGATTCCC 115193
Query 4307 AAAACAGATGGGAAACCCCATCCTTCTCCAAACCTGGGAGGTTTTGGTCTCCATAATCCA 4366
| |||| || | ||| || || || | ||||||| || || | || | |
Sbjct 115192 CACACAGGCGGCAGCTTCCACCCGTCCCCGCTCATGGGAGGATTCGG-GTTCAGGAAGCT 115134
Query 4367 CCTCCCCAGGTCTTTATTAAAAATACTCCTGTTCCTGCAGATCCTCC 4413
||||| ||| || | || ||||||| | ||||| || |||||||
Sbjct 115133 CCTCCTCAGATC-TCATAAAAAATATGCTGGTTCCCGCCAATCCTCC 115088
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 16299082799595
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |