Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04]
63,439 sequences; 2,073,344,508 total letters
Query= NC_006148.1
Length=4432
Score E
Sequences producing significant alignments: (Bits) Value
seq875 127 6e-26
seq615 120 9e-24
>seq875
Length=186252
Score = 127 bits (140), Expect = 6e-26
Identities = 303/453 (67%), Gaps = 20/453 (4%)
Strand=Plus/Minus
Query 2595 CTGTCATGGCTACAGGAGGAGGCGGTCCGATGGCAGACGATAACCAGGGCGCCGAGGGAG 2654
||||||||| ||||||||| ||| ||| | ||||| | | ||| | ||| | ||
Sbjct 116409 CTGTCATGGTTACAGGAGGCAGCGCTCC-ACCAAGGACGACATGCGGGGTGACGATGCAG 116351
Query 2655 TGGGTAATTCCTCAGGTGATTGGCATTGCGATACCAAGTGGATGGGAGACCACGTCATTA 2714
|||| | ||||| || |||||| |||| || |||| |||||||| ||||||| | |
Sbjct 116350 TGGGGAGCTCCTCGGGAAATTGGCGTTGCAATTCCAAATGGATGGGCAACCACGTGCTCA 116291
Query 2715 CAAAGTCAACCAGAACTTGGGTGCTCCCCACTTACGGGAATCATCTCTACGGGCCTATCA 2774
| |||| || | || ||||| || |||||| || | || | ||| || |||
Sbjct 116290 CCGAGTCCGCCGGGACCTGGGTCCTGCCCACT-ACAACCACCACCAGTACAAGCGCATCG 116232
Query 2775 ACTTTGACGG---CACCA-CAGGTTCGGGTGCTAATGCAGCCTATGCAGGATACAAGACT 2830
||| | || ||||| || | | | ||| |||| ||| |||
Sbjct 116231 ACTCAAAGGGAGCCACCAGCAAGGACAATTTCTA---CAGC----------TACTCTACT 116185
Query 2831 CCCTGGGGGTACTTTGACTTCAATCGATTCCATTGCCACTTCTCCCCCCGAGACTGGCAA 2890
|| ||||| ||||||||||| || || ||||| | | |||| || ||||||||||||||
Sbjct 116184 CCGTGGGGATACTTTGACTTTAA-CGCTTCCAGTACTACTTTTCACCCCGAGACTGGCAG 116126
Query 2891 AGACTCATCAACAACCACACAGGCATCAGGCCGAAAGGACTCAAAATCAAAGTCTTTAAC 2950
| || |||| || | || || || | || |||| |||| | ||||||
Sbjct 116125 TGCTTCGTCAAATACAATTGGGGTCTCTGGTCCAAGAGACTTTCCTTCAAGCTGTTTAAC 116066
Query 2951 GTCCAAGTCAAAGAAGTTACAACACAAGATTCAACGAAAACAATTGCCAACAATCTCACC 3010
||||| || || || || || || || || | | | || || |||| || ||||||
Sbjct 116065 GTCCAGGTTAAGGAGGTCACTACGCAGGAGGGAGCCACGACCATCACCAATAACCTCACC 116006
Query 3011 AGCACCGTACAGATCTTTGCGGACGAGAACTAC 3043
|||||| | ||| ||||||||||| | |||||
Sbjct 116005 AGCACCATCCAGGTCTTTGCGGACTCGGACTAC 115973
Score = 82.4 bits (90), Expect = 2e-12
Identities = 153/221 (69%), Gaps = 3/221 (1%)
Strand=Plus/Minus
Query 1272 AACTTTGGCAAGAGAAACACCATCTGGCTGTATGGTCCAGCTACTACCGGCAAAACCATC 1331
|| || |||||| | |||||| ||||||| | || || || | || ||||| |||| |
Sbjct 117973 AAGTTGGGCAAGCGGAACACCGTCTGGCTCTTTGCACCTGCGCCCACGGGCAAGACCAAC 117914
Query 1332 ATCGCTCAAGCTATTGCACATGCTGTTAAACTGTTTGCTGGTGTTAATTGGACTAATGAA 1391
|| || |||||||| |||||||| | | || |||| || ||||| | ||
Sbjct 117913 ATTGCGGTGGCTATTGCCCATGCTGTGCCCTTTTATGGGCGTGTCAACTGGACCAGCGAG 117854
Query 1392 AACTTTCCCTTCTGTAACTGTCCAGGGAA-ACTGCTTATCTGGTGGGAGGAGGGCAAGAT 1450
||||||| |||| | | ||| | || || | | || | ||||||||||||||||||
Sbjct 117853 AACTTTCTCTTCA-TGATTGTGTGGACAAGACAG-TGATTTTGTGGGAGGAGGGCAAGAT 117796
Query 1451 GACAAACAAAATGGTGGAGACGGCTAAATGTATACTGGGGG 1491
||| ||| | ||||| |||| || || |||||||
Sbjct 117795 GACGGCCAAGGTCATGGAGTCGGCCAAGGCCATCCTGGGGG 117755
>seq615
Length=480679
Score = 120 bits (132), Expect = 9e-24
Identities = 265/392 (68%), Gaps = 19/392 (5%)
Strand=Plus/Plus
Query 2646 CCGAGGGAGTGGGTAATTCCTCAGGTGATTGGCATTGCGATACCAAGTGGATGGGAGACC 2705
|||| |||||||| | ||| ||||||||||| | ||||||| |||||||||||||
Sbjct 5623 CCGACGGAGTGGGCTCTGCCTGCAGTGATTGGCATGGAGATACCACATGGATGGGAGACC 5682
Query 2706 ACGTCATTACAAAGTCAACCAGAACTTGGGTGCTCCCCACTTACGGGAATCATCTCTACG 2765
|||||||||||||| || | || || | || ||||| ||| || || |||||
Sbjct 5683 GTGTCATTACAAAGTCCACACGGACAGGGATCCTGCCCACCTACAACAACCACATCTACA 5742
Query 2766 GGCCTATCAACTTTGACGGCACCACAGGT-TCGGGTGCTAATGCAGCCTATGCAGGATAC 2824
||| |||| | || |||| || || | | | || |||| || ||
Sbjct 5743 GGCGGATCACCA------GCTCCACCGGCATCAGCAACGACAACA-CCTACTTTGGTTA- 5794
Query 2825 AAGACTCCCTGGGGGTACTTTGACTTCAATCGATTCCATTGCCACTTCTCCCCCCGAGAC 2884
| | ||| || ||||||||||| || ||||| |||||||| | |||||||||
Sbjct 5795 --GGCGTGCTG----TATTTTGACTTCAACCGCTTCCACTGCCACTTTTTACCCCGAGAC 5848
Query 2885 TGGCAAAGACTCATCAACAACCACACAGGCATCAGGCCGAAAGGACTCAAAATCAAAGTC 2944
||| | | ||| |||| ||| | || ||| |||| || |||| |||| |
Sbjct 5849 TGGAAGCGTCTCGTCAATAACAGCTGGGGTATCCGGCCTAAGCAACTCGGTTTCAAGTTA 5908
Query 2945 TTTAACGTCCAAGTCAAAGAAGTTACAACA--CAAGATTCAACGAAAACAATTGCCAACA 3002
|| | | | |||||||| || || || ||| ||| | || || || || ||||| |
Sbjct 5909 TTCACCATACAAGTCAAGGAGGTCACGACAGTCAACA--GCACAAAGACCATCGCCAATA 5966
Query 3003 ATCTCACCAGCACCGTACAGATCTTTGCGGAC 3034
| |||||||||||| | ||| | |||| ||||
Sbjct 5967 ACCTCACCAGCACCATCCAGGTGTTTGTGGAC 5998
Score = 93.3 bits (102), Expect = 1e-15
Identities = 149/211 (71%), Gaps = 5/211 (2%)
Strand=Plus/Plus
Query 1269 AAGAACTTTGGCAAGAGAAACACCATCTGGCTGTATGGTCCAGCTACTACCGGCAAAACC 1328
|| || || |||||||| ||| |||||||||| | ||| || | || |||||||| |||
Sbjct 3940 AAAAAGTTCGGCAAGAGGAACGCCATCTGGCTCTTTGGACCTGTGACCACCGGCAAGACC 3999
Query 1329 ATCATCGCTCAAGCTATTGCACATGCTGTTAAACTGTTTGCTGGTGTTAATTGGACTAAT 1388
| ||| || | |||||||| ||||| || | | || | || | ||||| |||
Sbjct 4000 AACATTGCGGAGGCTATTGCCCATGCCGTGCCCTTCTATGGCTGCGTCAGCTGGACCAAT 4059
Query 1389 GAAAACTTTCCCTTCTGTAACTGTCCAGGGAAAC--TGCTTATCTGGTGGGAGGAGGGCA 1446
|| || |||||||| | ||| || ||| | || | ||| ||||||||||| |||
Sbjct 4060 GAGAATTTTCCCTTAACGA-CTG--CATGGACAAGATGGTGATCCGGTGGGAGGAGTGCA 4116
Query 1447 AGATGACAAACAAAATGGTGGAGACGGCTAA 1477
||||||| ||| | |||||| | || ||
Sbjct 4117 AGATGACGGCCAAGGTCGTGGAGTCAGCCAA 4147
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 14060637055095
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |