Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= NC_006148.1 Length=4432 Score E Sequences producing significant alignments: (Bits) Value seq875 127 6e-26 seq615 120 9e-24 >seq875 Length=186252 Score = 127 bits (140), Expect = 6e-26 Identities = 303/453 (67%), Gaps = 20/453 (4%) Strand=Plus/Minus Query 2595 CTGTCATGGCTACAGGAGGAGGCGGTCCGATGGCAGACGATAACCAGGGCGCCGAGGGAG 2654 ||||||||| ||||||||| ||| ||| | ||||| | | ||| | ||| | || Sbjct 116409 CTGTCATGGTTACAGGAGGCAGCGCTCC-ACCAAGGACGACATGCGGGGTGACGATGCAG 116351 Query 2655 TGGGTAATTCCTCAGGTGATTGGCATTGCGATACCAAGTGGATGGGAGACCACGTCATTA 2714 |||| | ||||| || |||||| |||| || |||| |||||||| ||||||| | | Sbjct 116350 TGGGGAGCTCCTCGGGAAATTGGCGTTGCAATTCCAAATGGATGGGCAACCACGTGCTCA 116291 Query 2715 CAAAGTCAACCAGAACTTGGGTGCTCCCCACTTACGGGAATCATCTCTACGGGCCTATCA 2774 | |||| || | || ||||| || |||||| || | || | ||| || ||| Sbjct 116290 CCGAGTCCGCCGGGACCTGGGTCCTGCCCACT-ACAACCACCACCAGTACAAGCGCATCG 116232 Query 2775 ACTTTGACGG---CACCA-CAGGTTCGGGTGCTAATGCAGCCTATGCAGGATACAAGACT 2830 ||| | || ||||| || | | | ||| |||| ||| ||| Sbjct 116231 ACTCAAAGGGAGCCACCAGCAAGGACAATTTCTA---CAGC----------TACTCTACT 116185 Query 2831 CCCTGGGGGTACTTTGACTTCAATCGATTCCATTGCCACTTCTCCCCCCGAGACTGGCAA 2890 || ||||| ||||||||||| || || ||||| | | |||| || |||||||||||||| Sbjct 116184 CCGTGGGGATACTTTGACTTTAA-CGCTTCCAGTACTACTTTTCACCCCGAGACTGGCAG 116126 Query 2891 AGACTCATCAACAACCACACAGGCATCAGGCCGAAAGGACTCAAAATCAAAGTCTTTAAC 2950 | || |||| || | || || || | || |||| |||| | |||||| Sbjct 116125 TGCTTCGTCAAATACAATTGGGGTCTCTGGTCCAAGAGACTTTCCTTCAAGCTGTTTAAC 116066 Query 2951 GTCCAAGTCAAAGAAGTTACAACACAAGATTCAACGAAAACAATTGCCAACAATCTCACC 3010 ||||| || || || || || || || || | | | || || |||| || |||||| Sbjct 116065 GTCCAGGTTAAGGAGGTCACTACGCAGGAGGGAGCCACGACCATCACCAATAACCTCACC 116006 Query 3011 AGCACCGTACAGATCTTTGCGGACGAGAACTAC 3043 |||||| | ||| ||||||||||| | ||||| Sbjct 116005 AGCACCATCCAGGTCTTTGCGGACTCGGACTAC 115973 Score = 82.4 bits (90), Expect = 2e-12 Identities = 153/221 (69%), Gaps = 3/221 (1%) Strand=Plus/Minus Query 1272 AACTTTGGCAAGAGAAACACCATCTGGCTGTATGGTCCAGCTACTACCGGCAAAACCATC 1331 || || |||||| | |||||| ||||||| | || || || | || ||||| |||| | Sbjct 117973 AAGTTGGGCAAGCGGAACACCGTCTGGCTCTTTGCACCTGCGCCCACGGGCAAGACCAAC 117914 Query 1332 ATCGCTCAAGCTATTGCACATGCTGTTAAACTGTTTGCTGGTGTTAATTGGACTAATGAA 1391 || || |||||||| |||||||| | | || |||| || ||||| | || Sbjct 117913 ATTGCGGTGGCTATTGCCCATGCTGTGCCCTTTTATGGGCGTGTCAACTGGACCAGCGAG 117854 Query 1392 AACTTTCCCTTCTGTAACTGTCCAGGGAA-ACTGCTTATCTGGTGGGAGGAGGGCAAGAT 1450 ||||||| |||| | | ||| | || || | | || | |||||||||||||||||| Sbjct 117853 AACTTTCTCTTCA-TGATTGTGTGGACAAGACAG-TGATTTTGTGGGAGGAGGGCAAGAT 117796 Query 1451 GACAAACAAAATGGTGGAGACGGCTAAATGTATACTGGGGG 1491 ||| ||| | ||||| |||| || || ||||||| Sbjct 117795 GACGGCCAAGGTCATGGAGTCGGCCAAGGCCATCCTGGGGG 117755 >seq615 Length=480679 Score = 120 bits (132), Expect = 9e-24 Identities = 265/392 (68%), Gaps = 19/392 (5%) Strand=Plus/Plus Query 2646 CCGAGGGAGTGGGTAATTCCTCAGGTGATTGGCATTGCGATACCAAGTGGATGGGAGACC 2705 |||| |||||||| | ||| ||||||||||| | ||||||| ||||||||||||| Sbjct 5623 CCGACGGAGTGGGCTCTGCCTGCAGTGATTGGCATGGAGATACCACATGGATGGGAGACC 5682 Query 2706 ACGTCATTACAAAGTCAACCAGAACTTGGGTGCTCCCCACTTACGGGAATCATCTCTACG 2765 |||||||||||||| || | || || | || ||||| ||| || || ||||| Sbjct 5683 GTGTCATTACAAAGTCCACACGGACAGGGATCCTGCCCACCTACAACAACCACATCTACA 5742 Query 2766 GGCCTATCAACTTTGACGGCACCACAGGT-TCGGGTGCTAATGCAGCCTATGCAGGATAC 2824 ||| |||| | || |||| || || | | | || |||| || || Sbjct 5743 GGCGGATCACCA------GCTCCACCGGCATCAGCAACGACAACA-CCTACTTTGGTTA- 5794 Query 2825 AAGACTCCCTGGGGGTACTTTGACTTCAATCGATTCCATTGCCACTTCTCCCCCCGAGAC 2884 | | ||| || ||||||||||| || ||||| |||||||| | ||||||||| Sbjct 5795 --GGCGTGCTG----TATTTTGACTTCAACCGCTTCCACTGCCACTTTTTACCCCGAGAC 5848 Query 2885 TGGCAAAGACTCATCAACAACCACACAGGCATCAGGCCGAAAGGACTCAAAATCAAAGTC 2944 ||| | | ||| |||| ||| | || ||| |||| || |||| |||| | Sbjct 5849 TGGAAGCGTCTCGTCAATAACAGCTGGGGTATCCGGCCTAAGCAACTCGGTTTCAAGTTA 5908 Query 2945 TTTAACGTCCAAGTCAAAGAAGTTACAACA--CAAGATTCAACGAAAACAATTGCCAACA 3002 || | | | |||||||| || || || ||| ||| | || || || || ||||| | Sbjct 5909 TTCACCATACAAGTCAAGGAGGTCACGACAGTCAACA--GCACAAAGACCATCGCCAATA 5966 Query 3003 ATCTCACCAGCACCGTACAGATCTTTGCGGAC 3034 | |||||||||||| | ||| | |||| |||| Sbjct 5967 ACCTCACCAGCACCATCCAGGTGTTTGTGGAC 5998 Score = 93.3 bits (102), Expect = 1e-15 Identities = 149/211 (71%), Gaps = 5/211 (2%) Strand=Plus/Plus Query 1269 AAGAACTTTGGCAAGAGAAACACCATCTGGCTGTATGGTCCAGCTACTACCGGCAAAACC 1328 || || || |||||||| ||| |||||||||| | ||| || | || |||||||| ||| Sbjct 3940 AAAAAGTTCGGCAAGAGGAACGCCATCTGGCTCTTTGGACCTGTGACCACCGGCAAGACC 3999 Query 1329 ATCATCGCTCAAGCTATTGCACATGCTGTTAAACTGTTTGCTGGTGTTAATTGGACTAAT 1388 | ||| || | |||||||| ||||| || | | || | || | ||||| ||| Sbjct 4000 AACATTGCGGAGGCTATTGCCCATGCCGTGCCCTTCTATGGCTGCGTCAGCTGGACCAAT 4059 Query 1389 GAAAACTTTCCCTTCTGTAACTGTCCAGGGAAAC--TGCTTATCTGGTGGGAGGAGGGCA 1446 || || |||||||| | ||| || ||| | || | ||| ||||||||||| ||| Sbjct 4060 GAGAATTTTCCCTTAACGA-CTG--CATGGACAAGATGGTGATCCGGTGGGAGGAGTGCA 4116 Query 1447 AGATGACAAACAAAATGGTGGAGACGGCTAA 1477 ||||||| ||| | |||||| | || || Sbjct 4117 AGATGACGGCCAAGGTCGTGGAGTCAGCCAA 4147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14060637055095