Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= NC_006152.1 Length=4642 Score E Sequences producing significant alignments: (Bits) Value seq875 410 4e-111 seq615 365 1e-97 >seq875 Length=186252 Score = 410 bits (454), Expect = 4e-111 Identities = 567/783 (72%), Gaps = 9/783 (1%) Strand=Plus/Minus Query 1016 TACATGGCGCTCGTCAACTGGCTCGTGGAGCACGGCATCACTTCCGAGAAGCAGTGGATC 1075 ||||||| |||||| |||||||| |||||| ||||||| || || |||| ||| ||||| Sbjct 118267 TACATGGAGCTCGTTAACTGGCTGGTGGAGAACGGCATTACGTCAGAGA-GCAATGGATT 118209 Query 1076 CAGGAAAATCAGGAGAGCTACCTCTCCTTCAACTCCACCGGCAACTCTCGGAGCCAGATC 1135 ||||| || ||||| || |||| | |||| | || ||||| | || || ||| Sbjct 118208 CAGGAGAACCAGGAAGCCTGTATCTCTTACAACGCGACGGGCAATGCCCGCTCGCAAATC 118149 Query 1136 AAGGCCGCGCTCGACAACGCGACCAAAATTATGAGTCTGACAAAAAGCGCGGTGGACTAC 1195 ||| | || || |||||||| | |||||| |||| ||||| || | || ||||||| Sbjct 118148 AAGTCGGCTCTGGACAACGCCAGCAAAATCGTGAGCCTGACCAAGACGGCCTCGGACTAC 118089 Query 1196 CTCGTGGGGAGCTCCGTTCCCGAGGACATTTCAAAAAACAGAATCTGGCAAATTTTTGAG 1255 || || ||| || | | || || ||| | ||| | || | || ||| | Sbjct 118088 CTGGTCGGGT-CTGCATCGCC-AGAGCATCGAGGACAACCGCGTCCACCGCATCTTTCAC 118031 Query 1256 ATGAATGGCTACGACCCGGCCTACGCGGGATCCATCCTCTACGGCTGGTGTCAGCGCTCC 1315 | || ||||||||||||||||| || || || | | |||||||| | | Sbjct 118030 CTCAACGGCTACGACCCGGCCTATGCCGGCTCAGTGGTGCTGGGCTGGTGCCGAAGAAAG 117971 Query 1316 TTCAACAAGAGGAACACCGTCTGGCTCTACGGACCCGCCACGACCGGCAAGACCAACATC 1375 || |||| |||||||||||||||||| | ||| || | || |||||||||||||| Sbjct 117970 TTGGGCAAGCGGAACACCGTCTGGCTCTTTGCACCTGCGCCCACGGGCAAGACCAACATT 117911 Query 1376 GCGGAGGCCATCGCCCACACTGTGCCCTTTTACGGCTGCGTGAACTGGACCAATGAAAAC 1435 |||| ||| || ||||| ||||||||||||| || | || |||||||||| || ||| Sbjct 117910 GCGGTGGCTATTGCCCATGCTGTGCCCTTTTATGGGCGTGTCAACTGGACCAGCGAGAAC 117851 Query 1436 TTTCCCTTTAATGACTGTGTGGACAAAATGCTCATTTGGTGGGAGGAGGGAAAGATGACC 1495 |||| ||| | ||| ||||||||||| | | |||| |||||||||||| |||||||| Sbjct 117850 TTTCTCTTCA-TGATTGTGTGGACAAGACAGTGATTTTGTGGGAGGAGGGCAAGATGACG 117792 Query 1496 AACAAGGTGGTTGAATCCGCCAAGGCCATCCTGGGGGGCTCAAAGGTGCGGGTCGATCAG 1555 |||||| | || || ||||||||||||||||||| ||| ||| | || || ||| Sbjct 117791 GCCAAGGTCATGGAGTCGGCCAAGGCCATCCTGGGGG-CTCGGCAGTGTGAGTGGACCAG 117733 Query 1556 AAATGTAAATCCTCTGTTCAAATTGATTCTACCCCTGTCATTGTAACTTCCAATACAAAC 1615 ||||| || |||| || | ||| | || || ||||| | || ||||| || ||| Sbjct 117732 AAATGCAAG-CCTCGCAGCAGACTGAACCCACACCGGTCATCATCACCTCCAACACCAAC 117674 Query 1616 ATGTGTGTGGTGGTGGATGGGAATTCCACGACCTTTGAACACCAGCAGCCGCTGGAGGAC 1675 ||||| ||||| || || || || | ||||||||||||||| |||||| | ||||| Sbjct 117673 ATGTGCGTGGTCACTGACGGAAACTCGAAGACCTTTGAACACCAACAGCCGTTACAGGAC 117614 Query 1676 CGCATGTTCAAATTTGAACTGACTAAGCGGCTCCCGCCAGATTTTGGCAAGATTACTAAG 1735 ||||||||||| || ||||||||| | || | |||||| ||||| || | |||||| Sbjct 117613 CGCATGTTCAAGTTGGAACTGACTTACCGTTTGGAGCCAGACTTTGGGAAAGTGACTAAG 117554 Query 1736 CAGGAAGTCAAGGACTTTTTTGCTTGGGCAAAGGTCAATCAGGTGCCGGTGACTCACGAG 1795 | ||| ||||| |||||||| || ||||| | | ||| | | |||| |||||||| Sbjct 117553 CGGGAGGTCAAAGACTTTTTCGCCTGGGCCACCGCCAA-CGAGCATCGGT--CTCACGAG 117497 Query 1796 TTT 1798 ||| Sbjct 117496 TTT 117494 Score = 246 bits (272), Expect = 9e-62 Identities = 470/688 (68%), Gaps = 22/688 (3%) Strand=Plus/Minus Query 2825 GGTGCCGATGGAGTGGGCAATGCCTCGGGAGATTGGCATTGCGATTCCACGTGGATGGGG 2884 |||| ||||| |||||| | |||||||| |||||| |||| |||||| |||||||| Sbjct 116363 GGTGACGATGCAGTGGGGAGCTCCTCGGGAAATTGGCGTTGCAATTCCAAATGGATGGGC 116304 Query 2885 GACAGAGTCGTCACCAAGTCCACCCGAACCTGGGTGCTGCCCAGCTACAACAACCACCAG 2944 || || ||||| ||||| || | |||||||| ||||||| ||||||| |||||||| Sbjct 116303 AACCACGTGCTCACCGAGTCCGCCGGGACCTGGGTCCTGCCCA-CTACAACCACCACCAG 116245 Query 2945 TACCGAGAG-ATCAA---AAGCGGCTCCGTCGACGGAAGCAACGCCAACGCCTACTTTGG 3000 ||| || | ||| | || || || | ||||| | ||| |||| | Sbjct 116244 TACA-AGCGCATCGACTCAAAGGGAGCCACC------AGCAAGGACAATTTCTACA---G 116195 Query 3001 ATACAGCACCCCCTGGGGGTACTTTGACTTTAACCGCTTCCACAGCCACTGGAGCCCCCG 3060 ||| || || ||||| ||||||||||||||| ||||||| | ||| ||||| Sbjct 116194 CTACTCTACTCCGTGGGGATACTTTGACTTTAAC-GCTTCCAGTACTACTTTTCACCCCG 116136 Query 3061 AGACTGGCAAAGACTCATCAACAACTACTGGGGCTTCAGACCCCGGTCCCTCAGAGTCAA 3120 ||||||||| | || |||| || | ||||| || | || | || |||| Sbjct 116135 AGACTGGCAGTGCTTCGTCAAATACAATTGGGGTCTCTGGTCCAAGAGACTTTCCTTCAA 116076 Query 3121 AATCTTCAACATTCAAGTCAAAGAGGTCACGGTGCAGGACTCCACCACNNNNATCGCCAA 3180 | || ||| | || || || |||||||| |||||| |||| ||| |||| Sbjct 116075 GCTGTTTAACGTCCAGGTTAAGGAGGTCACTACGCAGGAGGGAGCCACGACCATCACCAA 116016 Query 3181 CAACCTCACCTCCACCGTCCAAGTGTTTACGGACGACGACTACCAGCTGCCCTACGTCGT 3240 ||||||||| |||| |||| || ||| ||||| ||||||||| | | |||| | Sbjct 116015 TAACCTCACCAGCACCATCCAGGTCTTTGCGGACTCGGACTACCAGGTCCTGCACGTGCT 115956 Query 3241 CGGCAACGGGACCGAGGGATGCCTGCCGGCCTTCCCTCCGCAGGTCTTTACGCTGCCGCA 3300 ||||||| | ||||||| ||||| ||||||| | || ||||| ||| | || || Sbjct 115955 AGGCAACGCGCACGAGGGAACGCTGCCTCCCTTCCCGGCCCATGTCTTCACGGTCCCCCA 115896 Query 3301 GTACGGTTACGCGACGCTGAACCGCGACAACACAGAAAATCCCACCGAGAGGAGCAGCTT 3360 ||||| |||| ||||| ||| ||| || || || | | | |||||||| Sbjct 115895 GTACGCCTACGACACGCTCAAC------AACGGGGACAACGCCGCAGCTCGCAGCAGCTT 115842 Query 3361 CTTCTGCCTAGAGTACTTTCCCAGCAAGATGCTGAGAACGGGCAACAACTTTGAGTTTAC 3420 || |||||| |||||| | || ||| |||||||| | | ||||||||||| | | || Sbjct 115841 CTACTGCCTCGAGTACATGCCGAGCCAGATGCTGCGGATGGGCAACAACTACGCCTCCAC 115782 Query 3421 CTACAACTTTGAGGAGGTGCCCTTCCACTCCAGCTTCGCTCCCAGTCAGAACCTGTTCAA 3480 ||| | |||||||| || ||||| ||||| | | | | | |||| | || | | Sbjct 115781 GTACGAGTTTGAGGACGTACCCTTTCACTCGATGTACATGCACCTCCAGAGCATGCACCA 115722 Query 3481 GCTGGCCAACCCGCTGGTGGACCAGTAC 3508 |||| |||||| | |||||| |||| Sbjct 115721 CCTGGTTAACCCGTTCATGGACCGGTAC 115694 Score = 212 bits (234), Expect = 2e-51 Identities = 211/273 (77%), Gaps = 3/273 (1%) Strand=Plus/Minus Query 2330 CGTGGTCTTGTGCTGCCTGGTTATAACTATCTCGGACCCGGAAACGGTCTCGATCGAGGA 2389 || ||||| || || || || ||||| ||||||||||| || ||||| ||| ||| Sbjct 116877 CGGGGTCTGGTCCTTCCGGGATATAAATATCTCGGACCGTTCAATGGTCTGGATAAGGGA 116818 Query 2390 GAGCCTGTCAACAGGGCAGACGAGGTCGCGCGAGAGCACGACATCTCGTACAACGAGCAG 2449 || | |||| | ||||||| ||||| | |||||||| | || ||| ||||||| Sbjct 116817 GACCGGGTCAGTCGCGCAGACGCCGTCGCTCTAGAGCACGTCGGCT---ACAGCGAGCAG 116761 Query 2450 CTTGAGGCGGGAGACAACCCCTACCTCAAGTACAACCACGCGGACGCCGAGTTTCAGGAG 2509 || |||||||||||||||||||||||||||| |||||| || ||| || || |||||| Sbjct 116760 CTCGAGGCGGGAGACAACCCCTACCTCAAGTGCAACCATGCCGACAGAGAATTCCAGGAG 116701 Query 2510 AAGCTCGCCGACGACACATCCTTCGGGGGAAACCTCGGAAAGGCAGTCTTTCAGGCCAAG 2569 |||| | | |||||||| | || ||| |||||||||||| ||||||||||||||||| Sbjct 116700 AAGCACTCTGACGACACCTGTTTTGGGAGAAACCTCGGAAGAGCAGTCTTTCAGGCCAAA 116641 Query 2570 AAAAGGGTTCTCGAACCTTTTGGCCTGGTTGAA 2602 || | | || || ||||||||||| |||||| Sbjct 116640 AAGCGACTGCTTGAGCCTTTTGGCCTCGTTGAA 116608 >seq615 Length=480679 Score = 365 bits (404), Expect = 1e-97 Identities = 547/770 (71%), Gaps = 40/770 (5%) Strand=Plus/Plus Query 1012 GAAATACATGGCGCTCGTCAACTGGCTCGTGGAGCACGGCATCACTTCCGAGAAGCAGTG 1071 |||||||||||| || || ||||| || || ||| || ||| || || |||| || || Sbjct 3647 GAAATACATGGCACTGGTTAACTGCCTGGTAGAGAACAGCACTACGTCAGAGAGACAATG 3706 Query 1072 GATCCAGGAAAATCAGGAGAGCTACCTCTCCTTCAACTCCACCGGCAACTCTCG---GA- 1127 ||| ||||| || |||||| ||| ||||| | ||| |||| |||| | | || Sbjct 3707 GATTCAGGAGAACCAGGAGTCCTATCTCTCTTACAATGCCACGGGCATTGCAAGAGAGAT 3766 Query 1128 --GC-------CAGATCAAGGCCGCGCTCGACAACGCGACCAAAATTATGAGTCTGACAA 1178 || ||||||||| | || || || | || | |||||| ||| | Sbjct 3767 AGGCGTGGTCGCAGATCAAGTCGGCTCTGGAAGATGCCAGCAAAAT-------CTGCC-- 3817 Query 1179 AAAGCGCGGTGGACTACCTCGTGGGGAGCT---CCGTTCCCGAGGACATTTCAAAAAACA 1235 | |||||| || || || || ||| || ||||||||| | ||| Sbjct 3818 --------GCGGACTATCT-GTTCGGTTCTGTACCG--CCTGAGGACATTACCGTGAACC 3866 Query 1236 GAATCTGGCAAATTTTTGAGATGAATGGCTACGACCCGGCCTACGCGGGATCCATCCT-C 1294 | | || ||| || ||||||||||||| ||| |||||| ||| | ||||| || | Sbjct 3867 GCAGCTAATGAATCTTCTAGATGAATGGCTATGACGCGGCCTGCGCCAGCTCCATTCTGC 3926 Query 1295 TACGGCTGGTGTCAGCGCTCCTTCAACAAGAGGAACACCGTCTGGCTCTACGGACCCGCC 1354 | ||| ||||| || ||| |||||||||| || ||||||||| ||||| | Sbjct 3927 TCCGG-TGGTGCCAAAAAAG-TTCGGCAAGAGGAACGCCATCTGGCTCTTTGGACCTGTG 3984 Query 1355 ACGACCGGCAAGACCAACATCGCGGAGGCCATCGCCCACACTGTGCCCTTTTACGGCTGC 1414 || ||||||||||||||||| |||||||| || ||||| | |||||||| || |||||| Sbjct 3985 ACCACCGGCAAGACCAACATTGCGGAGGCTATTGCCCATGCCGTGCCCTTCTATGGCTGC 4044 Query 1415 GTGAACTGGACCAATGAAAACTTTCCCTTTAATGACTGTGTGGACAAAATGCTCATTTGG 1474 || | |||||||||||| || |||||||| || ||||| ||||||| ||| | || || Sbjct 4045 GTCAGCTGGACCAATGAGAATTTTCCCTT-AACGACTGCATGGACAAGATGGTGATCCGG 4103 Query 1475 TGGGAGGAGGGAAAGATGACCAACAAGGTGGTTGAATCCGCCAAGGCCATCCTGGGGGGC 1534 ||||||||| | |||||||| |||||| || || || ||||||||||||| |||||| Sbjct 4104 TGGGAGGAGTGCAAGATGACGGCCAAGGTCGTGGAGTCAGCCAAGGCCATCCGAGGGGGC 4163 Query 1535 TCAAAGGTGCGGGTCGATCAGAAATGTAAATCCTCTGTTCAAATTGATTCTACCCCTGTC 1594 || | ||||| ||| | |||||||| || |||| || ||||| | || | ||| Sbjct 4164 TCTACGGTGCAAGTCAACCAGAAATGCAAGTCCTGGCAGCAGATTGACCCCACTCTGGTC 4223 Query 1595 ATTGTAACTTCCAATACAAACATGTGTGTGGTGGTGGATGGGAATTCCACGACCTTTGAA 1654 || | || ||| | | ||| |||| ||||| | || ||||| |||| ||| |||||| Sbjct 4224 ATCATCACCTCCTACATCAACGTGTGCGTGGTCATCGACGGGAACTCCATGACTTTTGAA 4283 Query 1655 CACCAGCAGCCGCTGGAGGACCGCATGTTCAAATTTGAACTGACTAAGCGGCTCCCGCCA 1714 ||||||||||||||| |||| | ||||||||||||||||| || | | ||||| Sbjct 4284 CACCAGCAGCCGCTGCAGGATTGGATGTTCAAATTTGAACTAACGCGCTGTTTGGCGCCA 4343 Query 1715 GATTTTGGCAAGATTACTAAGCAGGAAGTCAAGGACTTTTTTGCTTGGGC 1764 | |||||| || | |||||| || ||||| | ||| ||||| ||||| Sbjct 4344 GGTTTTGGGAAAGTGACTAAGTGAGAGGTCAAAGGCTTCTTTGCCTGGGC 4393 Score = 333 bits (368), Expect = 8e-88 Identities = 813/1211 (67%), Gaps = 83/1211 (7%) Strand=Plus/Plus Query 2291 CCGAAACCAAAACCCAATCAGCAGCATCAAGATCAAGCCCGTGGTCTTGTGCTGCCTGGT 2350 || ||||| | || || || | || ||||| || || ||||| || || || || Sbjct 5052 CCCAAACCGAGGCCTAACCATTAACACCAAGACTCTGCTCGGGGTCTGGTCCTTCCGGGA 5111 Query 2351 TATAACTATCTCGGACCCGGAAACGGTCTCGATCGAGGAGAGCCTGTCAACAGGGCAGAC 2410 ||||| |||||||| ||| ||| |||| ||| |||||| | || ||||| |||||| Sbjct 5112 TATAAATATCTCGGTCCCCTCAACAGTCTGGATAAAGGAGACGCGGTTAACAGAGCAGAC 5171 Query 2411 GAGGTCGCGCGAGAGCACGACATCTCGTACAACGAGCAGCTTGAGGCGGGAGACA----A 2466 | | || | |||||| ||| || || ||||||||| ||||||||||||| | Sbjct 5172 GCCATTGCCCAAGAGCAGGACGTCAACCACCGCGAGCAGCTGGAGGCGGGAGACAGACAA 5231 Query 2467 CCCCTACCTCAAGTACAACCACGCGGACGCCGAGTTTCAGGAGAAGCTCGCCGACGACAC 2526 || |||||||||| |||| || | ||| |||||||| |||||||| | ||| |||| Sbjct 5232 TCCTTACCTCAAGTCCAACTACACTGACCGAGAGTTTCAAAAGAAGCTCTCTGACAACAC 5291 Query 2527 ATCCTTCGGGGGAAACCTCGGAAAGGCAGTCTTTCAGGCCAAGAAAAGGGT-TC---TCG 2582 || || ||| | |||||||||||||||||||| ||||||||||| || | || | | Sbjct 5292 CTCTTTTGGGCGTAACCTCGGAAAGGCAGTCTTCCAGGCCAAGAAGAGTCTGTCTGTTTG 5351 Query 2583 AACCTTTTGGCCTGGTTG---AAGAGGGTGCTAAGACGGCCCCTACCGGAAAGCG-GATA 2638 | |||||| | |||| || ||||||| |||| ||| || ||| | ||||| | || Sbjct 5352 AGCCTTTTAGTCTGGCTGAGTAAGAGGGCGCTACGACAGCTCCTGGGGAGAAGCGCGCTA 5411 Query 2639 GAC-----GACCACTTTCCAAAAAGAAAGAAGGCTCGGACCGAAGAG----GACTCCAAG 2689 ||| || | | || || |||| ||| || ||| ||||| || Sbjct 5412 GACCGATGGAGCCC---CCGCCGCCCAACGAGGCGTCGACTGAGGAGACGTTACTCC-AG 5467 Query 2690 CCTTCC--ACCTCGTCAGACGC-CGAAGCTGGACCCAGCGGATC--CCAGCAGCTGCAAA 2744 | || | || |||| | |||| || ||| | |||| | | | || || | Sbjct 5468 CGACCCGGAGTCCGCCAGAGACTAGAAG--GG--CCATCCGATCAAGCTGGATCTTCAGA 5523 Query 2745 TCCCAGC-CCAACCAGCCTCAAGTTTGGGAGCTGATACAATG-TCT-------------- 2788 | |||| || || | |||| ||||| | || |||||||| ||| Sbjct 5524 -CTCAGCAGCAGCCCCCGTCAA-TTTGGAATCTAATACAATGATCTAGTTGTCAAGTTTG 5581 Query 2789 ----GCGGGAGGTGGCGGCCCATTGGGCGACAATAACCAAGGTGCCGATGGAGTGGGCAA 2844 || ||||||||| ||| || ||||| | | || |||| ||||||||| Sbjct 5582 CCACGCAGGAGGTGGCTCACCAGTG---GACAACATGCGGTGTTCCGACGGAGTGGGCTC 5638 Query 2845 TGCCTCGGGAGATTGGCATTGCGATTCCACGTGGATGGGGGACAGAGTCGTCACCAAGTC 2904 ||||| | ||||||||| | ||| |||| |||||||| ||| | ||| | || ||||| Sbjct 5639 TGCCTGCAGTGATTGGCATGGAGATACCACATGGATGGGAGACCGTGTCATTACAAAGTC 5698 Query 2905 CACCCGAACCTGGGTGCTGCCCAGCTACAACAACCACCAGTACCGAGAGATCAAAAGCGG 2964 ||| || || || | ||||||| ||||||||||||| ||| | |||| | | | Sbjct 5699 CACACGGACAGGGATCCTGCCCACCTACAACAACCACATCTACAGGCGGATC---ACCAG 5755 Query 2965 CTCCGTCGACGGAAGCAACGCCAACGCCTACTTTGGATACAGCACCCCCTGGGGGTACTT 3024 |||| || | ||||||| |||| |||||||||| || | | ||| || Sbjct 5756 CTCCACCGGCATCAGCAACGACAACACCTACTTTGGTTA-------GGCGTGCTGTATTT 5808 Query 3025 TGACTTTAACCGCTTCCACAGCCACTGGAGCCCCCGAGACTGGCAAAGACTCATCAACAA 3084 |||||| |||||||||||| |||||| |||||||||||| | | ||| |||| || Sbjct 5809 TGACTTCAACCGCTTCCACTGCCACTTTTTACCCCGAGACTGGAAGCGTCTCGTCAATAA 5868 Query 3085 CTACTGGGGCTTCAGACCCCGGTCCCTCAGAGTCAAAATCTTCAACATTCAAGTCAAAGA 3144 | |||||| || | || | ||| | |||| | |||| ||| |||||||| || Sbjct 5869 CAGCTGGGGTATCCGGCCTAAGCAACTCGGTTTCAAGTTATTCACCATACAAGTCAAGGA 5928 Query 3145 GGTCACGGTGCAG--GACTCCACCACNNNNATCGCCAACAACCTCACCTCCACCGTCCAA 3202 ||||||| ||| || ||| | |||||||| ||||||||| |||| |||| Sbjct 5929 GGTCACG--ACAGTCAACAGCACAAAGACCATCGCCAATAACCTCACCAGCACCATCCAG 5986 Query 3203 GTGTTTACGGAC-GAC-GACTACCAGCTGCCCTACGTCGTC-GGCAACGGGACCGAGGGA 3259 |||||| |||| || |||| ||||| ||| | | | | ||||| | ||| || Sbjct 5987 GTGTTTGTGGACACACGGACTGTCAGCT-CCCACCCTTGACTGGCAATGCCCACGAAGGG 6045 Query 3260 TGCCTGCCGGCCTTCCCTCCGCAGGTCTTTACGCTGCCGCAGTACGGTTACGCGACGCTG 3319 ||||| || | || || | | ||||||| | |||| || ||| | || ||| | Sbjct 6046 TGCCTACCCCCTTTTCCCGCCAACGTCTTTATGGTGCCTCAATACAGATAACTGACTTTC 6105 Query 3320 AACCGCGACAACACAGAAAATCCCACCGAGAGGAGCAGCTTCTTCTGCCTAGAGTACTTT 3379 ||| || || || || || ||||||| || || || | ||| |||| Sbjct 6106 AACAACG----GGCACAATGTCGTGCC--CAGGAGCACCTACTATTGTCGGGAGCGCTTT 6159 Query 3380 CCCAGCAAGATGCTGAGAACGGGCAACAACTTTGAGTTTACCTACAACTTTGAGGAGGTG 3439 |||||||| ||||| ||||| ||||||||||||| || ||| ||||||||||||| Sbjct 6160 CCCAGCAAAATGCTAAGAACAGGCAACAACTTTGCCTTCGGCTATGACTTTGAGGAGGTA 6219 Query 3440 CCCTTCCACTC 3450 || || || || Sbjct 6220 CCTTTTCAGTC 6230 Score = 147 bits (162), Expect = 6e-32 Identities = 291/425 (68%), Gaps = 17/425 (4%) Strand=Plus/Plus Query 4004 GACGTGTACCTCCAAGGACCCATCTGGGCCAAGATCCCAGAGACGGGGGCGCACTTTCAC 4063 ||| | |||||||| | | |||||||||||| | ||| | || | | ||||||||| Sbjct 6773 GACATCTACCTCCAGAGCCTGATCTGGGCCAAGGTTCCACACACTGACGGGCACTTTCAT 6832 Query 4064 CCCTCTCCGGCCATGGGCGGATTCGGACTCAAACACCCACCGCCCATGATGCTCATCAAG 4123 | ||||| |||||| |||||||| ||||| | | || | ||| || ||||| Sbjct 6833 CTGTCTCCTCTCATGGGGGGATTCGGTCTCAAGAAGGCCCCTCTTCAGATCCTGGTCAAG 6892 Query 4124 AACACGCCTGTGCCCGGAAATATCACCAGC----TTCTCGGACGTGCCCGTCAGCAGCTT 4179 ||||| || || || | || | |||| || | ||| ||| |||||| Sbjct 6893 AACACCCCGGTTCCTGCCGATC-CTCCAGTGGAATTTACAAGCGTCAAGCTCAACAGCTT 6951 Query 4180 CATCACCCAGTACAGCACCGGGCAGGTCACCGTGGAGATGGAGTGGGAGCTCAAGAAGGA 4239 |||||| ||||| |||||| | || | |||||||| || | | |||||| || ||| Sbjct 6952 CATCACTCAGTATAGCACCAGACAAGAAACCGTGGAAATTAAATAGGAGCTGCAGCTGGA 7011 Query 4240 AAACTCCAAGAGGTGGAACCCAGAGATCCAGTACACAAACAACTACAACG-ACCCCCAGT 4298 |||||||||||||||||||||| || || ||||| ||||| ||||| | ||| Sbjct 7012 GGACTCCAAGAGGTGGAACCCAGAAATTCAATACACTTCCAACTTCAACGTGCAGGCAG- 7070 Query 4299 TTGTGGACTTTGCCCCGGACAGCACCGGGGAATA--CAGAACCACCAGACCTATCGGAAC 4356 | ||||||||||| |||| | | || | || |||| | || ||||||||| Sbjct 7071 ACATCGACTTTGCCCCCGACAACTCTGGTGTCTACTCAGAGC--TGAGGGTTATCGGAAC 7128 Query 4357 CCGATACCTTACCCGACCCCTTTAA------CCCATTCATGTCGCATACCCTCAATAAAC 4410 ||| | |||||| ||| ||| ||||| ||| |||||||| |||||||| Sbjct 7129 CCGCTGGGTTACCCACAACCTCTAACCCCCGCCCATGTCTGTTGCATACCCACAATAAAC 7188 Query 4411 CGTGT 4415 ||||| Sbjct 7189 CGTGT 7193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14732170778445