Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= NC_006260.1 Length=4721 Score E Sequences producing significant alignments: (Bits) Value seq875 536 4e-149 seq615 462 7e-127 >seq875 Length=186252 Score = 536 bits (594), Expect = 4e-149 Identities = 736/1015 (73%), Gaps = 19/1015 (2%) Strand=Plus/Minus Query 1003 TACATGGAGCTGGTCGGGTGGCTGGTGGACCGGGGCATCACCTCCGAGAAGCAGTGGATC 1062 ||||||||||| || ||||||||||| ||||| || || |||| ||| ||||| Sbjct 118267 TACATGGAGCTCGTTAACTGGCTGGTGGAGAACGGCATTACGTCAGAGA-GCAATGGATT 118209 Query 1063 CAGGAGGACCAGGCCTCGTACATCTCCTTCAACGCCGCCTCCAACTCGCGGTCCCAGATC 1122 |||||| |||||| | | ||||| | |||||| | ||| | || || || ||| Sbjct 118208 CAGGAGAACCAGGAAGCCTGTATCTCTTACAACGCGACGGGCAATGCCCGCTCGCAAATC 118149 Query 1123 AAGGCCGCGCTGGACAATGCCGGCAAGATCATGGCGCTGACCAAATCCGCGCCCGACTAC 1182 ||| | || |||||||| ||| |||| ||| || |||||||| | || | |||||| Sbjct 118148 AAGTCGGCTCTGGACAACGCCAGCAAAATCGTGAGCCTGACCAAGACGGCCTCGGACTAC 118089 Query 1183 CTGGTGGGGCCCTCGCTGCCCGCGGACATTAAAACCAACCGCATCTACCGCATCCTGGAG 1242 ||||| ||| | | ||| | | ||| | ||||||| || |||||||| | | Sbjct 118088 CTGGTCGGGTCTGCATCGCCAGAG--CATCGAGGACAACCGCGTCCACCGCATCTTTCAC 118031 Query 1243 CTGAACGGGTACGATCCTGCCTACGCCGGCTCCGTCTTTCTCGGCTGGGCCCAGAAAAAG 1302 || ||||| ||||| || ||||| |||||||| || | || |||||| || | |||| Sbjct 118030 CTCAACGGCTACGACCCGGCCTATGCCGGCTCAGTGGTGCTGGGCTGGTGCCGAAGAAAG 117971 Query 1303 TTCGGGAAGCGCAACACCATCTGGCTGTTTGGGCCCGCCACCACCGGCAAGACCAACATT 1362 || || ||||| |||||| ||||||| |||| || || |||| ||||||||||||||| Sbjct 117970 TTGGGCAAGCGGAACACCGTCTGGCTCTTTGCACCTGCGCCCACGGGCAAGACCAACATT 117911 Query 1363 GCGGAAGCCATCGCCCACGCCGTGCCCTTCTACGGCTGCGTCAACTGGACCAATGAGAAC 1422 |||| || || ||||| || |||||||| || || | ||||||||||||| |||||| Sbjct 117910 GCGGTGGCTATTGCCCATGCTGTGCCCTTTTATGGGCGTGTCAACTGGACCAGCGAGAAC 117851 Query 1423 TTTCCCTTCAACGATTGCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGCAAGATGACG 1482 |||| |||| | ||||| || ||||||| ||||| | |||||||||||||||||||||| Sbjct 117850 TTTCTCTTC-ATGATTGTGTGGACAAGACAGTGATTTTGTGGGAGGAGGGCAAGATGACG 117792 Query 1483 GCCAAGGTCGTGGAGTCCGCCAAGGCCATTCTCGGCG-GCAGCAAGGTGCGCGTGGACCA 1541 ||||||||| ||||||| ||||||||||| || || | | ||| ||| | |||||||| Sbjct 117791 GCCAAGGTCATGGAGTCGGCCAAGGCCATCCTGGGGGCTCGGCA--GTGTGAGTGGACCA 117734 Query 1542 AAAGTGCAAGTCGTCCGCCCAGATCGACCCCACCCCCGTGATCGTCACCTCCAACACCAA 1601 || |||||| | || |||| || ||||| || || ||| |||||||||||||||| Sbjct 117733 GAAATGCAAG-CCTCGCAGCAGACTGAACCCACACCGGTCATCATCACCTCCAACACCAA 117675 Query 1602 CATGTGCGCCGTGATTGACGGGAACAGCACCACCTTCGAGCACCAGCAGCCGTTGCAGGA 1661 |||||||| || | |||||| ||| | ||||| || ||||| |||||||| ||||| Sbjct 117674 CATGTGCGTGGTCACTGACGGAAACTCGAAGACCTTTGAACACCAACAGCCGTTACAGGA 117615 Query 1662 CCGGATGTTCAAATTTGAACTCACCCGCCGTCTGGAGCACGACTTTGGCAAGGTGACGAA 1721 ||| |||||||| || ||||| || |||| |||||| |||||||| || ||||| || Sbjct 117614 CCGCATGTTCAAGTTGGAACTGACTTACCGTTTGGAGCCAGACTTTGGGAAAGTGACTAA 117555 Query 1722 GCAGGAAGTCAAAGAGTTCTTCCGCTGGGCCAGTGATCACGTGACCGAGGTGGCGCATGA 1781 || ||| |||||||| || ||| |||||||| | ||| | | ||| | || || Sbjct 117554 GCGGGAGGTCAAAGACTTTTTCGCCTGGGCCACCGCCAACGAG-CATCGGT--CTCACGA 117498 Query 1782 GTTCTACGTCAGAAAGGGCGGAGCCAGCAAAAGACCCGCCCCCGATGACGCGGATATAAG 1841 ||| | || || |||| | || |||||| ||| |||| || || | ||| ||| Sbjct 117497 GTTTTTTGTGAGGAAGGCAGTCTCCTCCAAAAGGCCCACCCCGGAAGA---GTATAAAAG 117441 Query 1842 CGAGCCCAAGCGGGCCTGCCCCTCAGTCGCGGATCCATCGACGTCAGACGCGGAAGGAGC 1901 | |||||||| || | ||| | ||| || |||| || | || | Sbjct 117440 TCCGGAGAAGCGGGCGTGGGTCGCAGCTGGAGATTCACACTCGTC---CGAGACAGACGA 117384 Query 1902 TCCGGTGGACTTTGCCGACAGGTACCAAAACAAA-TGTTCTCGTCACGCGGGCATGATTC 1960 || | ||||||| |||||| |||| |||| |||||| ||| ||| | | Sbjct 117383 TCTTATCCACTTTGCTCTCAGGTA-CAAATCAAAGTGTTCTAAACACTTGGGGCTCGATA 117325 Query 1961 AGATGCTGTTTCCCTGCAAAACGTGCGAGAGAATGAATCAGAATTTCAACATTTG 2015 | ||||| |||| || |||| || |||| |||||||||| || |||| ||||| Sbjct 117324 AAATGCTCTTTCTGTGTAAAATTTGTGAGAAAATGAATCAGGATGTCAATATTTG 117270 Score = 320 bits (354), Expect = 5e-84 Identities = 481/678 (71%), Gaps = 8/678 (1%) Strand=Plus/Minus Query 2873 GGTGCCGACGGAGTGGGTAATGCCTCAGGAAATTGGCATTGCGATTCCACATGGCTGGGC 2932 |||| ||| | |||||| | |||| |||||||||| |||| |||||| |||| ||||| Sbjct 116363 GGTGACGATGCAGTGGGGAGCTCCTCGGGAAATTGGCGTTGCAATTCCAAATGGATGGGC 116304 Query 2933 GACAGAGTCATTACCACCAGCACCCGAACCTGGGCCCTGCCCACCTACAACAACCACCTC 2992 || || | ||| | || | ||||||| ||||||||| |||||| |||||| Sbjct 116303 AACCACGTGCTCACCGAGTCCGCCGGGACCTGGGTCCTGCCCAC-TACAACCACCACCAG 116245 Query 2993 TACAAGCAAATCTCCAGTGAAACTGCAGGTAGTACCAACGACAACACCTACTTCGGCTAC 3052 ||||||| ||| | | ||| | || | | ||| ||||| |||| ||||| Sbjct 116244 TACAAGCGCATCGAC--TCAAAGGG-AGCCACCAGCAAGGACAATTTCTACA---GCTAC 116191 Query 3053 AGCACCCCCTGGGGGTATTTTGACTTTAACAGATTCCACTGCCACTTCTCACCACGTGAC 3112 || || ||||| || |||||||||||| | ||||| | | |||| ||||| || ||| Sbjct 116190 TCTACTCCGTGGGGATACTTTGACTTTAAC-GCTTCCAGTACTACTTTTCACCCCGAGAC 116132 Query 3113 TGGCAGCGACTCATCAACAACAACTGGGGATTCCGGCCCAAGAAGCTGCGGTTCAAGCTC 3172 |||||| | || |||| |||| ||||| || || |||||| || |||||||| Sbjct 116131 TGGCAGTGCTTCGTCAAATACAATTGGGGTCTCTGGTCCAAGAGACTTTCCTTCAAGCTG 116072 Query 3173 TTCAACATCCAGGTCAAGGAGGTCACGACGAATGACGGCGTTACGACCATCGCTAATAAC 3232 || ||| ||||||| ||||||||||| ||| | || || | ||||||||| | |||||| Sbjct 116071 TTTAACGTCCAGGTTAAGGAGGTCACTACGCAGGAGGGAGCCACGACCATCACCAATAAC 116012 Query 3233 CTTACCAGCACGATTCAGGTATTCTCGGACTCGGAATACCAGCTGCCGTACGTCCTCGGC 3292 || |||||||| || ||||| || |||||||||| |||||| | | | |||| || ||| Sbjct 116011 CTCACCAGCACCATCCAGGTCTTTGCGGACTCGGACTACCAGGTCCTGCACGTGCTAGGC 115952 Query 3293 TCTGCGCACCAGGGCTGCCTGCCTCCGTTCCCGGCGGACGTCTTCATGATTCCTCAGTAC 3352 |||||| |||| |||||||| |||||||| | ||||||| | | || |||||| Sbjct 115951 AACGCGCACGAGGGAACGCTGCCTCCCTTCCCGGCCCATGTCTTCACGGTCCCCCAGTAC 115892 Query 3353 GGCTACCTGACTCTCAACAATGGCAGTCAGTCTGTGGGACGTTCCTCCTTCTACTGCCTG 3412 | |||| || |||||||| || | | | | || | |||||||||||| Sbjct 115891 GCCTACGACACGCTCAACAACGGGGACAACGCCGCAGCTCGCAGCAGCTTCTACTGCCTC 115832 Query 3413 GAGTACTTCCCCTCTCAGATGCTGAGAACGGGCAACAACTTTGAGTTCAGCTACAGCTTC 3472 |||||| | || ||||||||| | | ||||||||||| | | || ||| || Sbjct 115831 GAGTACATGCCGAGCCAGATGCTGCGGATGGGCAACAACTACGCCTCCACGTACGAGTTT 115772 Query 3473 GAGGACGTGCCTTTCCACAGCAGCTACGCACACAGCCAGAGCCTGGACCGGCTGATGAAT 3532 |||||||| || || ||| | ||| ||| ||||||| || ||| ||| | || Sbjct 115771 GAGGACGTACCCTTTCACTCGATGTACATGCACCTCCAGAGCATGCACCACCTGGTTAAC 115712 Query 3533 CCCCTCATCGACCAGTAC 3550 || |||| |||| |||| Sbjct 115711 CCGTTCATGGACCGGTAC 115694 Score = 178 bits (196), Expect = 4e-41 Identities = 219/297 (74%), Gaps = 2/297 (1%) Strand=Plus/Minus Query 4034 GGCATGGTCTGGCAGAACCGGGACGTGTACCTGCAGGGTCCCATCTGGGCCAAGATTCCT 4093 |||||||||||||||||||| | | | ||||||||||| || ||||||||||||||||| Sbjct 115252 GGCATGGTCTGGCAGAACCGCGGCATTTACCTGCAGGGCCCGATCTGGGCCAAGATTCCC 115193 Query 4094 CACACGGATGGCAACTTTCACCCGTCTCCTTTGATGGGCGGCTTTGGACTTAAACATCCG 4153 ||||| | |||| ||| |||||||| || | ||||| || || || || | | | Sbjct 115192 CACACAGGCGGCAGCTTCCACCCGTCCCCGCTCATGGGAGGATTCGG-GTTCAGGAAGCT 115134 Query 4154 CCTCCTCAGATCCTGATCAAGAACACTCCCGTTCCCGCTAATCCTCCGGAGGTGTTTACT 4213 ||||||||||| || || || || | | |||||||| |||||||| | | ||| | Sbjct 115133 CCTCCTCAGAT-CTCATAAAAAATATGCTGGTTCCCGCCAATCCTCCCGTCGACTTTGCC 115075 Query 4214 CCTGCCAAGTTTGCTTCGTTCATCACACAGTACAGCACCGGACAAGTCAGCGTGGAAATC 4273 || |||||| ||||||| ||| ||||||| ||||| || | || || | Sbjct 115074 CCCAGCAAGTTCCAGAGCTTCATCAACCAGGACAGCACTGGACAGGTGACAGTAGAGCTT 115015 Query 4274 GAGTGGGAGCTGCAGAAGGAAAACAGCAAGCGCTGGAACCCGGAGATTCAGTACACC 4330 |||||| |||||||| ||| || ||| |||||||||| ||| | ||||||||| Sbjct 115014 GAGTGGCAGCTGCAGCGGGAGGACTCGAAGTGCTGGAACCCCGAGGTGCAGTACACC 114958 Score = 168 bits (186), Expect = 2e-38 Identities = 297/425 (70%), Gaps = 11/425 (3%) Strand=Plus/Minus Query 2197 GAGCAATAAATGACTTAAACCAGGTATGGCTGCCGATGGTTATCTTCCAGATTGGCTCGA 2256 || |||| | ||||| |||| || |||||||| ||||| || |||||| ||| | || Sbjct 117024 GAACAATGATTGACTCAAAC-AGATATGGCTG---ATGGTCATTTTCCAGGCTGGTTGGA 116969 Query 2257 GGACAACCTCTCTGAGGGCATTCGCGAGTGGTGGGACCTGAAAC-CTGGAGCCCCGAAAC 2315 ||||| |||||||||| ||| ||||| | || || ||||||| || |||| Sbjct 116968 GGACACTTTCTCTGAGGGTCGGCGCCAGTGGAAT-AGATGCAAGGCTGGAGCGCCCAAAC 116910 Query 2316 CCAAAGCCAACCAGCAAAAGCAGGACAACGGCCGGGGTCTGGTGCTTCCTGGCTACAAGT 2375 | | |||||| | || ||| ||||||||||| ||||| || || || | Sbjct 116909 CGCGGCCTCACCAGCGTCACCAAGACTCTTCTCGGGGTCTGGTCCTTCCGGGATATAAAT 116850 Query 2376 ACCTCGGACCCTTCAACGGACTCGACAAGGGGGAGCCCGTCA-ACGCGGCGGACGCAGCG 2434 | |||||||| ||||| || || || ||||| || | |||| ||| || ||||| | Sbjct 116849 ATCTCGGACCGTTCAATGGTCTGGATAAGGGAGACCGGGTCAGTCGC-GCAGACGCCGTC 116791 Query 2435 GCCCTCGAGCACGACAAGGCCTACGACCAGCAGCTCAAAGCGGGTGACAATCCGTACCTG 2494 || || ||||||| | | |||| | |||||||| | ||||| ||||| || ||||| Sbjct 116790 GCTCTAGAGCACGTC---GGCTACAGCGAGCAGCTCGAGGCGGGAGACAACCCCTACCTC 116734 Query 2495 CGGTATAACCACGCCGACGCCGAGTTTCAGGAGCGTCTGCAAGAAGATACGTCATTTGGG 2554 || ||||| |||||| || || |||||| | || || || | |||||| Sbjct 116733 AAGTGCAACCATGCCGACAGAGAATTCCAGGAGAAGCACTCTGACGACACCTGTTTTGGG 116674 Query 2555 GGCAACCTCGGGCGAGCAGTCTTCCAGGCCAAGAAGCGGGTTCTCGAACCTCTCGGTCTG 2614 | |||||||| |||||||||| |||||||| ||||| | || || ||| | || || Sbjct 116673 AGAAACCTCGGAAGAGCAGTCTTTCAGGCCAAAAAGCGACTGCTTGAGCCTTTTGGCCTC 116614 Query 2615 GTTGA 2619 ||||| Sbjct 116613 GTTGA 116609 >seq615 Length=480679 Score = 462 bits (512), Expect = 7e-127 Identities = 584/803 (73%), Gaps = 32/803 (4%) Strand=Plus/Plus Query 1003 TACATGGAGCTGGTCGGGTGGCTGGTGGACCGGGGCATCACCTCCGAGAAGCAGTGGATC 1062 ||||||| ||||| || ||||| || ||| || || |||| || ||||| Sbjct 3651 TACATGGCACTGGTTAACTGCCTGGTAGAGAACAGCACTACGTCAGAGAGACAATGGATT 3710 Query 1063 CAGGAGGACCAGGCCTCGTACATCTCCTTCAACGCCGCCTCCA-------------ACTC 1109 |||||| |||||| || || |||| | ||| ||| | || | | Sbjct 3711 CAGGAGAACCAGGAGTCCTATCTCTCTTACAATGCCACGGGCATTGCAAGAGAGATAGGC 3770 Query 1110 GCGGTCCCAGATCAAGGCCGCGCTGGACAATGCCGGCAAGATCATGGCGCTGACCAAATC 1169 | |||| ||||||||| | || ||||| ||||| |||| ||| || | Sbjct 3771 GTGGTCGCAGATCAAGTCGGCTCTGGAAGATGCCAGCAAAATC-------TG-------C 3816 Query 1170 CGCGCCCGACTACCTGGTGGGGCCCTCGCTGCCCGCGGACATTAAAACCAACCGCATCTA 1229 |||| ||||| ||| | || | | ||| | |||||||| ||||||| ||| Sbjct 3817 CGCG---GACTATCTGTTCGGTTCTGTACCGCCTGAGGACATTACCGTGAACCGCAGCTA 3873 Query 1230 CCGCATCCTGGAGCTGAACGGGTACGATCCTGCCTACGCCGGCTCCGTCTTTCTCGGCTG 1289 | ||| | || |||| || || || | |||| |||| ||||| | | ||| | || Sbjct 3874 ATGAATCTTCTAGATGAATGGCTATGACGCGGCCTGCGCCAGCTCCATTCTGCTCCGGTG 3933 Query 1290 GGCCCAGAAAAAGTTCGGGAAGCGCAACACCATCTGGCTGTTTGGGCCCGCCACCACCGG 1349 | ||| ||||||||||| ||| | ||| |||||||||| ||||| || | |||||||| Sbjct 3934 GTGCCA-AAAAAGTTCGGCAAGAGGAACGCCATCTGGCTCTTTGGACCTGTGACCACCGG 3992 Query 1350 CAAGACCAACATTGCGGAAGCCATCGCCCACGCCGTGCCCTTCTACGGCTGCGTCAACTG 1409 |||||||||||||||||| || || ||||| |||||||||||||| |||||||||| ||| Sbjct 3993 CAAGACCAACATTGCGGAGGCTATTGCCCATGCCGTGCCCTTCTATGGCTGCGTCAGCTG 4052 Query 1410 GACCAATGAGAACTTTCCCTTCAACGATTGCGTCGACAAGATGGTGATCTGGTGGGAGGA 1469 |||||||||||| |||||||| ||||| ||| | ||||||||||||||| |||||||||| Sbjct 4053 GACCAATGAGAATTTTCCCTT-AACGACTGCATGGACAAGATGGTGATCCGGTGGGAGGA 4111 Query 1470 GGGCAAGATGACGGCCAAGGTCGTGGAGTCCGCCAAGGCCATTCTCGGCGGCAGCAAGGT 1529 | |||||||||||||||||||||||||||| ||||||||||| | || ||| | ||| Sbjct 4112 GTGCAAGATGACGGCCAAGGTCGTGGAGTCAGCCAAGGCCATCCGAGGGGGCTCTACGGT 4171 Query 1530 GCGCGTGGACCAAAAGTGCAAGTCGTCCGCCCAGATCGACCCCACCCCCGTGATCGTCAC 1589 || || |||| || |||||||| | ||||| |||||||| | || ||| |||| Sbjct 4172 GCAAGTCAACCAGAAATGCAAGTCCTGGCAGCAGATTGACCCCACTCTGGTCATCATCAC 4231 Query 1590 CTCCAACACCAACATGTGCGCCGTGATTGACGGGAACAGCACCACCTTCGAGCACCAGCA 1649 |||| ||| |||| |||||| || || ||||||||| || || || || |||||||| Sbjct 4232 CTCCTACATCAACGTGTGCGTGGTCATCGACGGGAACTCCATGACTTTTGAACACCAGCA 4291 Query 1650 GCCGTTGCAGGACCGGATGTTCAAATTTGAACTCACCCGCCGTCTGGAGCACGACTTTGG 1709 |||| ||||||| ||||||||||||||||||| || ||| || ||| || | ||||| Sbjct 4292 GCCGCTGCAGGATTGGATGTTCAAATTTGAACTAACGCGCTGTTTGGCGCCAGGTTTTGG 4351 Query 1710 CAAGGTGACGAAGCAGGAAGTCAAAGAGTTCTTCCGCTGGGCCAGTGATCACGTGACCGA 1769 || ||||| ||| || ||||||| ||||| |||||| || ||| | || Sbjct 4352 GAAAGTGACTAAGTGAGAGGTCAAAGGCTTCTTTGCCTGGGCGCCGGAACACCCCAGGGA 4411 Query 1770 GGTGGCGCATGAGTTCTACGTCA 1792 |||| |||| |||| |||||| Sbjct 4412 GGTGACGCACCAGTTTGACGTCA 4434 Score = 340 bits (376), Expect = 5e-90 Identities = 512/723 (71%), Gaps = 21/723 (3%) Strand=Plus/Plus Query 2837 GCAGGCGGTGGCGCACCAATGGCAGACAATAACGAAGGTGCCGACGGAGTGGGTAATGCC 2896 ||||| |||||| ||||| ||| |||| | || ||||||||||||| |||| Sbjct 5586 GCAGGAGGTGGCTCACCAGTGG---ACAACATGCGGTGTTCCGACGGAGTGGGCTCTGCC 5642 Query 2897 TCAGGAAATTGGCATTGCGATTCCACATGGCTGGGCGACAGAGTCATTACCACCAGCACC 2956 | | |||||||| | ||| |||||||| |||| ||| | |||||||| | ||| Sbjct 5643 TGCAGTGATTGGCATGGAGATACCACATGGATGGGAGACCGTGTCATTACAAAGTCCACA 5702 Query 2957 CGAACCTGGGCCCTGCCCACCTACAACAACCACCTCTACAAGCAAATCTCCAGTGAAACT 3016 || || || |||||||||||||||||||||| |||||| || ||| |||| || Sbjct 5703 CGGACAGGGATCCTGCCCACCTACAACAACCACATCTACAGGCGGATCACCAG-----CT 5757 Query 3017 GCA--GGTAGTACCAACGACAACACCTACTTCGGCTACAGCACCCCCTGGGGGTATTTTG 3074 || || | | |||||||||||||||||| || || | | |||||||| Sbjct 5758 CCACCGGCATCAGCAACGACAACACCTACTTTGGTTAGG-------CGTGCTGTATTTTG 5810 Query 3075 ACTTTAACAGATTCCACTGCCACTTCTCACCACGTGACTGGCAGCGACTCATCAACAACA 3134 |||| ||| | |||||||||||||| | ||| || |||||| |||| ||| |||| |||| Sbjct 5811 ACTTCAACCGCTTCCACTGCCACTTTTTACCCCGAGACTGGAAGCGTCTCGTCAATAACA 5870 Query 3135 ACTGGGGATTCCGGCCCAAGAAGCTGCGGTTCAAGCTCTTCAACATCCAGGTCAAGGAGG 3194 |||||| ||||||| ||| | || | |||||| | |||| ||| || |||||||||| Sbjct 5871 GCTGGGGTATCCGGCCTAAGCAACTCGGTTTCAAGTTATTCACCATACAAGTCAAGGAGG 5930 Query 3195 TCACGACGAATGACGGCGTTACGACCATCGCTAATAACCTTACCAGCACGATTCAGGTAT 3254 ||||||| || || | ||||||||| |||||||| |||||||| || ||||| | Sbjct 5931 TCACGACAGTCAACAGCACAAAGACCATCGCCAATAACCTCACCAGCACCATCCAGGTGT 5990 Query 3255 TCTCGG--ACTCGGAATACCAGCTGCCGTACGTCCTCGGCTCTGCGCACCAGGGCTGCCT 3312 | || || |||| | ||||| || | | ||| ||| ||| | || ||||| Sbjct 5991 TTGTGGACACACGGACTGTCAGCTCCCACCCTTGACTGGCAATGCCCACGAAGGGTGCCT 6050 Query 3313 GCCTCCGTTCCCGGCGGACGTCTTCATGATTCCTCAGTACGGCTACCTGACTCTCAACAA 3372 || || || || || ||||||| ||| | ||||| ||| | || |||||| ||||||| Sbjct 6051 ACCCCCTTTTCCCGCCAACGTCTTTATGGTGCCTCAATACAGATAACTGACTTTCAACAA 6110 Query 3373 -TGGCAGTCAGTCTGTGGGACGTTCCTCCTTCTACTGCCTGGAGTACTTCCCCTCTCAGA 3431 |||| ||| ||| | | ||| ||| || | |||| ||| ||| | | Sbjct 6111 CGGGCACAATGTC-GTGCCCAGGAGCACCTACTATTGTCGGGAGCGCTTTCCCAGCAAAA 6169 Query 3432 TGCTGAGAACGGGCAACAACTTTGAGTTCAGCTACAGCTTCGAGGACGTGCCTTTCCACA 3491 |||| ||||| ||||||||||||| ||| |||| ||| ||||| || ||||| || Sbjct 6170 TGCTAAGAACAGGCAACAACTTTGCCTTCGGCTATGACTTTGAGGAGGTACCTTTTCAGT 6229 Query 3492 GCAGCTACGCACACAGCCAGAGCCTGGACCGGCTGATGAATCCCCTCATCGACCAGTACT 3551 | ||| ||||||||| || |||||||||||||| | || | || |||||| Sbjct 6230 CAATGTACATACACAGCCATGGCACTGACCGGCTGATGAACTCGCTGTTGAACTAGTACT 6289 Query 3552 TGT 3554 ||| Sbjct 6290 TGT 6292 Score = 219 bits (242), Expect = 1e-53 Identities = 267/364 (73%), Gaps = 0/364 (0%) Strand=Plus/Plus Query 4031 CCTGGCATGGTCTGGCAGAACCGGGACGTGTACCTGCAGGGTCCCATCTGGGCCAAGATT 4090 ||||||||| ||||||||||| ||| | ||||| ||| | | |||||||||||| || Sbjct 6749 CCTGGCATGAATTGGCAGAACCGAGACATCTACCTCCAGAGCCTGATCTGGGCCAAGGTT 6808 Query 4091 CCTCACACGGATGGCAACTTTCACCCGTCTCCTTTGATGGGCGGCTTTGGACTTAAACAT 4150 || ||||| || || ||||||| | ||||||| | ||||| || || || || || | Sbjct 6809 CCACACACTGACGGGCACTTTCATCTGTCTCCTCTCATGGGGGGATTCGGTCTCAAGAAG 6868 Query 4151 CCGCCTCCTCAGATCCTGATCAAGAACACTCCCGTTCCCGCTAATCCTCCGGAGGTGTTT 4210 | |||| |||||||||| |||||||||| || ||||| || ||||||| | || ||| Sbjct 6869 GCCCCTCTTCAGATCCTGGTCAAGAACACCCCGGTTCCTGCCGATCCTCCAGTGGAATTT 6928 Query 4211 ACTCCTGCCAAGTTTGCTTCGTTCATCACACAGTACAGCACCGGACAAGTCAGCGTGGAA 4270 || | |||| | |||||||| ||||| |||||| |||||| | ||||||| Sbjct 6929 ACAAGCGTCAAGCTCAACAGCTTCATCACTCAGTATAGCACCAGACAAGAAACCGTGGAA 6988 Query 4271 ATCGAGTGGGAGCTGCAGAAGGAAAACAGCAAGCGCTGGAACCCGGAGATTCAGTACACC 4330 || | | |||||||||| ||| || |||| | |||||||| || ||||| ||||| Sbjct 6989 ATTAAATAGGAGCTGCAGCTGGAGGACTCCAAGAGGTGGAACCCAGAAATTCAATACACT 7048 Query 4331 TCCAACTTTGAAAAGCAGACTGGTGTGGACTTTGCCGTTGACAGCCAGGGTGTTTACTCT 4390 |||||||| | |||| | | | ||||||||| |||| | ||||| ||||| Sbjct 7049 TCCAACTTCAACGTGCAGGCAGACATCGACTTTGCCCCCGACAACTCTGGTGTCTACTCA 7108 Query 4391 GAGC 4394 |||| Sbjct 7109 GAGC 7112 Score = 120 bits (132), Expect = 9e-24 Identities = 303/457 (66%), Gaps = 39/457 (9%) Strand=Plus/Plus Query 2228 GCCGATGGTTATCTTCCAGATTGGCTCGAGGACAACCTCTCTGAGGGCATTCGCGAGTGG 2287 || ||||||||| || |||||||| | |||| | ||| ||| | ||| || |||| ||| Sbjct 4987 GCTGATGGTTATTTTACAGATTGGTTGGAGGGTACCCTTTCTAAAGGCTTTTGCGACTGG 5046 Query 2288 TGGGACCTGAAACCTGGAGCCCCGAAACCCAAAGCCAACCAGCAAAAGCAGGACAACGGC 2347 | | || ||||| ||| || ||||| || | || ||| | Sbjct 5047 TAGTGCCC-AAACC--GAGGCCT-------------AACCATTAACACCAAGACTCTGCT 5090 Query 2348 CGGGGTCTGGTGCTTCCTGGCTACAAGTACCTCGGACCCTTCAACGGACTCGACAAGGGG 2407 ||||||||||| ||||| || || || || ||||| ||| ||||| | || || || || Sbjct 5091 CGGGGTCTGGTCCTTCCGGGATATAAATATCTCGGTCCCCTCAACAGTCTGGATAAAGGA 5150 Query 2408 GAGCCCGTCAACGCGGCGGACGCAGCGGCCCTCGAGCACGACAAGGCCTACGACC---AG 2464 || | || ||| || ||||| |||| ||||| ||| | | || ||| || Sbjct 5151 GACGCGGTTAACAGAGCAGACGCCATTGCCCAAGAGCAGGAC---GTCAACCACCGCGAG 5207 Query 2465 CAGCTCAAAGCGGG----TGACAATCCGTACCTGCGGTATAACCACGCCGACGCCGAGTT 2520 ||||| | ||||| |||||||| ||||| || ||| || | ||| ||||| Sbjct 5208 CAGCTGGAGGCGGGAGACAGACAATCCTTACCTCAAGTCCAACTACACTGACCGAGAGTT 5267 Query 2521 TCAGGAGCGTCTGCAAGAAGATACGTCATTTGGGGGCAACCTCGGGCGAGCAGTCTTCCA 2580 ||| || || || | || || |||||| | |||||||| ||||||||||| Sbjct 5268 TCAAAAGAAGCTCTCTGACAACACCTCTTTTGGGCGTAACCTCGGAAAGGCAGTCTTCCA 5327 Query 2581 GGCCAAGAAGCGGGT-TC---TCGAACCTCTCGGTCTGGTTGAG---GAAGGCGCTAAGA 2633 |||||||||| | | || | || ||| | |||||| |||| || ||||||| || Sbjct 5328 GGCCAAGAAGAGTCTGTCTGTTTGAGCCTTTTAGTCTGGCTGAGTAAGAGGGCGCTACGA 5387 Query 2634 CGGCTCCTGCAAAGAAG------AGACCGGTAGAGCC 2664 | ||||||| ||||| |||||| | ||||| Sbjct 5388 CAGCTCCTGGGGAGAAGCGCGCTAGACCGATGGAGCC 5424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14984795369610