Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= NC_006261.1 Length=4393 Score E Sequences producing significant alignments: (Bits) Value seq875 536 3e-149 seq615 453 3e-124 >seq875 Length=186252 Score = 536 bits (594), Expect = 3e-149 Identities = 736/1015 (73%), Gaps = 19/1015 (2%) Strand=Plus/Minus Query 902 TATATGGAGCTGGTCGGGTGGCTGGTGGACCGGGGCATCACCTCCGAGAAGCAGTGGATC 961 || |||||||| || ||||||||||| ||||| || || |||| ||| ||||| Sbjct 118267 TACATGGAGCTCGTTAACTGGCTGGTGGAGAACGGCATTACGTCAGAGA-GCAATGGATT 118209 Query 962 CAGGAGGACCAGGCCTCGTACATCTCCTTCAACGCCGCCTCCAACTCGCGGTCCCAGATC 1021 |||||| |||||| | | ||||| | |||||| | ||| | || || || ||| Sbjct 118208 CAGGAGAACCAGGAAGCCTGTATCTCTTACAACGCGACGGGCAATGCCCGCTCGCAAATC 118149 Query 1022 AAGGCCGCGCTGGACAATGCCGGCAAGATCATGGCGCTGACCAAATCCGCGCCCGACTAC 1081 ||| | || |||||||| ||| |||| ||| || |||||||| | || | |||||| Sbjct 118148 AAGTCGGCTCTGGACAACGCCAGCAAAATCGTGAGCCTGACCAAGACGGCCTCGGACTAC 118089 Query 1082 CTGGTGGGGCCCTCGCTGCCCGCGGACATTACCCAGAACCGCATCTACCGCATCCTCGCT 1141 ||||| ||| | | ||| | | ||| | |||||| || |||||||| | Sbjct 118088 CTGGTCGGGTCTGCATCGCCAGAG--CATCGAGGACAACCGCGTCCACCGCATCTTTCAC 118031 Query 1142 CTCAACGGCTACGACCCTGCCTACGCCGGCTCCGTCTTTCTCGGCTGGGCTCAGAAAAAG 1201 ||||||||||||||||| ||||| |||||||| || | || |||||| | | |||| Sbjct 118030 CTCAACGGCTACGACCCGGCCTATGCCGGCTCAGTGGTGCTGGGCTGGTGCCGAAGAAAG 117971 Query 1202 TTCGGGAAACGCAACACCATCTGGCTGTTTGGACCCGCCACCACCGGCAAGACCAACATT 1261 || || || || |||||| ||||||| |||| ||| || |||| ||||||||||||||| Sbjct 117970 TTGGGCAAGCGGAACACCGTCTGGCTCTTTGCACCTGCGCCCACGGGCAAGACCAACATT 117911 Query 1262 GCGGAAGCCATCGCCCACGCCGTGCCCTTCTACGGCTGCGTCAACTGGACCAATGAGAAC 1321 |||| || || ||||| || |||||||| || || | ||||||||||||| |||||| Sbjct 117910 GCGGTGGCTATTGCCCATGCTGTGCCCTTTTATGGGCGTGTCAACTGGACCAGCGAGAAC 117851 Query 1322 TTTCCCTTCAATGATTGCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGCAAGATGACG 1381 |||| |||| ||||||| || ||||||| ||||| | |||||||||||||||||||||| Sbjct 117850 TTTCTCTTC-ATGATTGTGTGGACAAGACAGTGATTTTGTGGGAGGAGGGCAAGATGACG 117792 Query 1382 GCCAAGGTCGTGGAGTCCGCCAAGGCCATTCTCGGCG-GCAGCAAGGTGCGCGTGGACCA 1440 ||||||||| ||||||| ||||||||||| || || | | ||| ||| | |||||||| Sbjct 117791 GCCAAGGTCATGGAGTCGGCCAAGGCCATCCTGGGGGCTCGGCA--GTGTGAGTGGACCA 117734 Query 1441 AAAGTGCAAGTCGTCCGCCCAGATCGACCCCACCCCCGTGATCGTCACCTCCAACACCAA 1500 || |||||| | || |||| || ||||| || || ||| |||||||||||||||| Sbjct 117733 GAAATGCAAG-CCTCGCAGCAGACTGAACCCACACCGGTCATCATCACCTCCAACACCAA 117675 Query 1501 CATGTGCGCCGTGATTGACGGGAACAGCACCACCTTCGAGCACCAGCAGCCTCTCCAGGA 1560 |||||||| || | |||||| ||| | ||||| || ||||| ||||| | ||||| Sbjct 117674 CATGTGCGTGGTCACTGACGGAAACTCGAAGACCTTTGAACACCAACAGCCGTTACAGGA 117615 Query 1561 CCGGATGTTTAAGTTCGAACTCACCCGCCGTCTGGAGCACGACTTTGGCAAGGTGACAAA 1620 ||| ||||| ||||| ||||| || |||| |||||| |||||||| || ||||| || Sbjct 117614 CCGCATGTTCAAGTTGGAACTGACTTACCGTTTGGAGCCAGACTTTGGGAAAGTGACTAA 117555 Query 1621 GCAGGAAGTCAAAGAGTTCTTCCGCTGGGCCAGTGATCACGTGACCGAGGTGGCGCATGA 1680 || ||| |||||||| || ||| |||||||| | ||| | | ||| | || || Sbjct 117554 GCGGGAGGTCAAAGACTTTTTCGCCTGGGCCACCGCCAACGAG-CATCGGT--CTCACGA 117498 Query 1681 GTTTTACGTCAGAAAGGGCGGAGCCAGCAAAAGACCCGCCCCCGATGACGCGGATAAAAG 1740 ||||| || || |||| | || |||||| ||| |||| || || | ||||||| Sbjct 117497 GTTTTTTGTGAGGAAGGCAGTCTCCTCCAAAAGGCCCACCCCGGAAGA---GTATAAAAG 117441 Query 1741 CGAGCCCAAGCGGGCCTGCCCCTCAGTCGCGGATCCATCGACGTCAGACGCGGAAGGAGC 1800 | |||||||| || | ||| | ||| || |||| || | || | Sbjct 117440 TCCGGAGAAGCGGGCGTGGGTCGCAGCTGGAGATTCACACTCGTC---CGAGACAGACGA 117384 Query 1801 TCCGGTGGACTTTGCCGACAGGTACCAAAACAAA-TGTTCTCGTCACGCGGGCATGCTTC 1859 || | ||||||| |||||| |||| |||| |||||| ||| ||| | | Sbjct 117383 TCTTATCCACTTTGCTCTCAGGTA-CAAATCAAAGTGTTCTAAACACTTGGGGCTCGATA 117325 Query 1860 AGATGCTGTTTCCCTGCAAAACGTGCGAGAGAATGAATCAGAATTTCAACATTTG 1914 | ||||| |||| || |||| || |||| |||||||||| || |||| ||||| Sbjct 117324 AAATGCTCTTTCTGTGTAAAATTTGTGAGAAAATGAATCAGGATGTCAATATTTG 117270 Score = 374 bits (414), Expect = 2e-100 Identities = 491/677 (73%), Gaps = 11/677 (2%) Strand=Plus/Minus Query 2777 CGACGGAGTGGGTAGTTCCTCGGGAAATTGGCATTGCGATTCCACATGGCTGGGCGACAG 2836 ||| | |||||| || |||||||||||||||| |||| |||||| |||| ||||| || Sbjct 116358 CGATGCAGTGGGGAGCTCCTCGGGAAATTGGCGTTGCAATTCCAAATGGATGGGCAACCA 116299 Query 2837 AGTCATCACCACCAGCACCCGAACCTGGGCCCTGCCCACCTACAACAACCACCTCTACAA 2896 || ||||| | || | ||||||| ||||||||| |||||| |||||| ||||| Sbjct 116298 CGTGCTCACCGAGTCCGCCGGGACCTGGGTCCTGCCCAC-TACAACCACCACCAGTACAA 116240 Query 2897 GCAAATCTCCAACGGGACATCGGGAGGAGCCACCAACGACAACACCTACTTCGGCTACAG 2956 || ||| ||| || |||||||||| | | ||| | || | ||||| Sbjct 116239 GCGCATC--------GAC-TCAAAGGGAGCCACCAGCAAGGACAATTTCTACAGCTACTC 116189 Query 2957 CACCCCCTGGGGGTATTTTGACTTTAACAGATTCCACTGCCACTTTTCACCACGTGACTG 3016 || || ||||| || |||||||||||| | ||||| | | |||||||||| || ||||| Sbjct 116188 TACTCCGTGGGGATACTTTGACTTTAAC-GCTTCCAGTACTACTTTTCACCCCGAGACTG 116130 Query 3017 GCAGCGACTCATCAACAACAACTGGGGATTCCGGCCCAAGAGACTCAGCTTCAAGCTCTT 3076 |||| | || |||| |||| ||||| || || |||||||||| ||||||||| || Sbjct 116129 GCAGTGCTTCGTCAAATACAATTGGGGTCTCTGGTCCAAGAGACTTTCCTTCAAGCTGTT 116070 Query 3077 CAACATCCAGGTCAAGGAGGTCACGCAGAATGAAGGCACCAAGACCATCGCCAATAACCT 3136 ||| ||||||| ||||||||||| | | || || ||| ||||||| |||||||||| Sbjct 116069 TAACGTCCAGGTTAAGGAGGTCACTACGCAGGAGGGAGCCACGACCATCACCAATAACCT 116010 Query 3137 CACCAGCACCATCCAGGTGTTTACGGACTCGGAGTACCAGCTGCCGTACGTTCTCGGCTC 3196 |||||||||||||||||| ||| |||||||||| |||||| | | | |||| || ||| Sbjct 116009 CACCAGCACCATCCAGGTCTTTGCGGACTCGGACTACCAGGTCCTGCACGTGCTAGGCAA 115950 Query 3197 TGCCCACCAGGGCTGCCTGCCTCCGTTCCCGGCGGACGTGTTCATGATTCCCCAGTACGG 3256 || ||| |||| |||||||| |||||||| | || |||| | | |||||||||| Sbjct 115949 CGCGCACGAGGGAACGCTGCCTCCCTTCCCGGCCCATGTCTTCACGGTCCCCCAGTACGC 115890 Query 3257 CTACCTAACACTCAACAACGGTAGTCAGGCCGTGGGACGCTCCTCCTTCTACTGCCTGGA 3316 |||| || ||||||||||| | |||| | ||| | |||||||||||| || Sbjct 115889 CTACGACACGCTCAACAACGGGGACAACGCCGCAGCTCGCAGCAGCTTCTACTGCCTCGA 115830 Query 3317 ATACTTTCCTTCGCAGATGCTGAGAACCGGCAACAACTTCCAGTTTACTTACACCTTCGA 3376 ||| | || ||||||||| | | |||||||||| | | || ||| || || Sbjct 115829 GTACATGCCGAGCCAGATGCTGCGGATGGGCAACAACTACGCCTCCACGTACGAGTTTGA 115770 Query 3377 GGACGTGCCTTTCCACAGCAGCTACGCCCACAGCCAGAGCTTGGACCGGCTGATGAATCC 3436 |||||| || || ||| | ||| ||| ||||||| || ||| ||| | || || Sbjct 115769 GGACGTACCCTTTCACTCGATGTACATGCACCTCCAGAGCATGCACCACCTGGTTAACCC 115710 Query 3437 TCTGATTGACCAGTACC 3453 | || |||| ||||| Sbjct 115709 GTTCATGGACCGGTACC 115693 Score = 176 bits (194), Expect = 1e-40 Identities = 222/299 (74%), Gaps = 6/299 (2%) Strand=Plus/Minus Query 3936 GGTATGGTCTGGCAGAACCGGGACGTGTACCTGCAGGGTCCCATCTGGGCCAAGATTCCT 3995 || ||||||||||||||||| | | | ||||||||||| || ||||||||||||||||| Sbjct 115252 GGCATGGTCTGGCAGAACCGCGGCATTTACCTGCAGGGCCCGATCTGGGCCAAGATTCCC 115193 Query 3996 CACACGGACGGCAACTTCCACCCGTCTCCGCTGATGGGCGGCTTTGGCCTGAAACATCCT 4055 ||||| | ||||| |||||||||||| ||||| ||||| || || || | | | || Sbjct 115192 CACACAGGCGGCAGCTTCCACCCGTCCCCGCTCATGGGAGGATTCGG-GTTCAGGAAGCT 115134 Query 4056 CCGCCTCAGATCCTGATCAAGAACACGCCTGTACCTGCGGATCCT-CCGACCACCTT-CA 4113 || |||||||| || || || || | || || || || ||||| ||| | || || | Sbjct 115133 CCTCCTCAGAT-CTCATAAAAAATATGCTGGTTCCCGCCAATCCTCCCGTCGACTTTGCC 115075 Query 4114 ACCAGTCAAAGCTGAACTCTTTCATCACGCAATACAGCACCGGACAGGTCAGCGTGGAAA 4173 |||| ||| | | ||||||| || ||||||| |||||||| | || || Sbjct 115074 CCCAG--CAAGTTCCAGAGCTTCATCAACCAGGACAGCACTGGACAGGTGACAGTAGAGC 115017 Query 4174 TTGAATGGGAGCTGCAGAAGGAAAACAGCAAGCGCTGGAACCCCGAGATCCAGTACACC 4232 |||| ||| |||||||| ||| || ||| |||||||||||||| | ||||||||| Sbjct 115016 TTGAGTGGCAGCTGCAGCGGGAGGACTCGAAGTGCTGGAACCCCGAGGTGCAGTACACC 114958 Score = 172 bits (190), Expect = 2e-39 Identities = 298/426 (70%), Gaps = 13/426 (3%) Strand=Plus/Minus Query 2096 GAGCAATAAATGACTTAAACCAGGTATGGCTGCCGATGGTTATCTTCCAGATTGGCTCGA 2155 || |||| | ||||| |||| || |||||||| ||||| || |||||| ||| | || Sbjct 117024 GAACAATGATTGACTCAAAC-AGATATGGCTG---ATGGTCATTTTCCAGGCTGGTTGGA 116969 Query 2156 GGACAACCTCTCTGAGGGCATTCGCGAGTGG--TGGGCGCTGAAACCTGGAGCCCCGAAG 2213 ||||| |||||||||| ||| ||||| | | || || ||||||| || || Sbjct 116968 GGACACTTTCTCTGAGGGTCGGCGCCAGTGGAATAGATGC--AAGGCTGGAGCGCCCAAA 116911 Query 2214 CCCAAAGCCAACCAGCAAAAGCAGGACGACGGCCGGGGTCTGGTGCTTCCTGGCTACAAG 2273 || | |||||| | || ||| ||||||||||| ||||| || || || Sbjct 116910 CCGCGGCCTCACCAGCGTCACCAAGACTCTTCTCGGGGTCTGGTCCTTCCGGGATATAAA 116851 Query 2274 TACCTCGGACCCTTCAACGGACTCGACAAGGGGGAGCCCGTCA-ACGCGGCGGACGCAGC 2332 || |||||||| ||||| || || || ||||| || | |||| ||| || ||||| | Sbjct 116850 TATCTCGGACCGTTCAATGGTCTGGATAAGGGAGACCGGGTCAGTCGC-GCAGACGCCGT 116792 Query 2333 GGCCCTCGAGCACGACAAGGCCTACGACCAGCAGCTGCAGGCGGGTGACAATCCGTACCT 2392 || || ||||||| | | |||| | ||||||| ||||||| ||||| || ||||| Sbjct 116791 CGCTCTAGAGCACGTC---GGCTACAGCGAGCAGCTCGAGGCGGGAGACAACCCCTACCT 116735 Query 2393 GCGGTATAACCACGCCGACGCCGAGTTTCAGGAGCGTCTGCAAGAAGATACGTCTTTTGG 2452 || ||||| |||||| || || |||||| | || || || | |||||| Sbjct 116734 CAAGTGCAACCATGCCGACAGAGAATTCCAGGAGAAGCACTCTGACGACACCTGTTTTGG 116675 Query 2453 GGGCAACCTCGGGCGAGCAGTCTTCCAGGCCAAGAAGCGGGTTCTCGAACCTCTCGGTCT 2512 | | |||||||| |||||||||| |||||||| ||||| | || || ||| | || || Sbjct 116674 GAGAAACCTCGGAAGAGCAGTCTTTCAGGCCAAAAAGCGACTGCTTGAGCCTTTTGGCCT 116615 Query 2513 GGTTGA 2518 ||||| Sbjct 116614 CGTTGA 116609 >seq615 Length=480679 Score = 453 bits (502), Expect = 3e-124 Identities = 512/684 (75%), Gaps = 19/684 (3%) Strand=Plus/Plus Query 1008 CGCGGTCCCAGATCAAGGCCGCGCTGGACAATGCCGGCAAGATCATGGCGCTGACCAAAT 1067 || |||| ||||||||| | || ||||| ||||| |||| ||| || Sbjct 3770 CGTGGTCGCAGATCAAGTCGGCTCTGGAAGATGCCAGCAAAATC-------TG------- 3815 Query 1068 CCGCGCCCGACTACCTGGTGGGGCCCTCGCTGCCCGCGGACATTACCCAGAACCGCATCT 1127 ||||| ||||| ||| | || | | ||| | |||||||||| |||||||| || Sbjct 3816 CCGCG---GACTATCTGTTCGGTTCTGTACCGCCTGAGGACATTACCGTGAACCGCAGCT 3872 Query 1128 ACCGCATCCTCGCTCTCAACGGCTACGACCCTGCCTACGCCGGCTCCGTCTTTCTCGGCT 1187 | | ||| || | || ||||| ||| | |||| |||| ||||| | | ||| | | Sbjct 3873 AATGAATCTTCTAGATGAATGGCTATGACGCGGCCTGCGCCAGCTCCATTCTGCTCCGGT 3932 Query 1188 GGGCTCAGAAAAAGTTCGGGAAACGCAACACCATCTGGCTGTTTGGACCCGCCACCACCG 1247 || || ||||||||||| || | ||| |||||||||| |||||||| | ||||||| Sbjct 3933 GGTGCCA-AAAAAGTTCGGCAAGAGGAACGCCATCTGGCTCTTTGGACCTGTGACCACCG 3991 Query 1248 GCAAGACCAACATTGCGGAAGCCATCGCCCACGCCGTGCCCTTCTACGGCTGCGTCAACT 1307 ||||||||||||||||||| || || ||||| |||||||||||||| |||||||||| || Sbjct 3992 GCAAGACCAACATTGCGGAGGCTATTGCCCATGCCGTGCCCTTCTATGGCTGCGTCAGCT 4051 Query 1308 GGACCAATGAGAACTTTCCCTTCAATGATTGCGTCGACAAGATGGTGATCTGGTGGGAGG 1367 ||||||||||||| |||||||| || || ||| | ||||||||||||||| ||||||||| Sbjct 4052 GGACCAATGAGAATTTTCCCTT-AACGACTGCATGGACAAGATGGTGATCCGGTGGGAGG 4110 Query 1368 AGGGCAAGATGACGGCCAAGGTCGTGGAGTCCGCCAAGGCCATTCTCGGCGGCAGCAAGG 1427 || |||||||||||||||||||||||||||| ||||||||||| | || ||| | || Sbjct 4111 AGTGCAAGATGACGGCCAAGGTCGTGGAGTCAGCCAAGGCCATCCGAGGGGGCTCTACGG 4170 Query 1428 TGCGCGTGGACCAAAAGTGCAAGTCGTCCGCCCAGATCGACCCCACCCCCGTGATCGTCA 1487 ||| || |||| || |||||||| | ||||| |||||||| | || ||| ||| Sbjct 4171 TGCAAGTCAACCAGAAATGCAAGTCCTGGCAGCAGATTGACCCCACTCTGGTCATCATCA 4230 Query 1488 CCTCCAACACCAACATGTGCGCCGTGATTGACGGGAACAGCACCACCTTCGAGCACCAGC 1547 ||||| ||| |||| |||||| || || ||||||||| || || || || ||||||| Sbjct 4231 CCTCCTACATCAACGTGTGCGTGGTCATCGACGGGAACTCCATGACTTTTGAACACCAGC 4290 Query 1548 AGCCTCTCCAGGACCGGATGTTTAAGTTCGAACTCACCCGCCGTCTGGAGCACGACTTTG 1607 |||| || ||||| ||||||| || || ||||| || ||| || ||| || | |||| Sbjct 4291 AGCCGCTGCAGGATTGGATGTTCAAATTTGAACTAACGCGCTGTTTGGCGCCAGGTTTTG 4350 Query 1608 GCAAGGTGACAAAGCAGGAAGTCAAAGAGTTCTTCCGCTGGGCCAGTGATCACGTGACCG 1667 | || ||||| ||| || ||||||| ||||| |||||| || ||| | | Sbjct 4351 GGAAAGTGACTAAGTGAGAGGTCAAAGGCTTCTTTGCCTGGGCGCCGGAACACCCCAGGG 4410 Query 1668 AGGTGGCGCATGAGTTTTACGTCA 1691 ||||| |||| ||||| |||||| Sbjct 4411 AGGTGACGCACCAGTTTGACGTCA 4434 Score = 327 bits (362), Expect = 3e-86 Identities = 510/724 (70%), Gaps = 20/724 (3%) Strand=Plus/Plus Query 2736 GCAGGCGGTGGCGCACCAATGGCAGACAATAACGAAGGCGCCGACGGAGTGGGTAGTTCC 2795 ||||| |||||| ||||| ||| |||| | | ||||||||||||| | || Sbjct 5586 GCAGGAGGTGGCTCACCAGTGG---ACAACATGCGGTGTTCCGACGGAGTGGGCTCTGCC 5642 Query 2796 TCGGGAAATTGGCATTGCGATTCCACATGGCTGGGCGACAGAGTCATCACCACCAGCACC 2855 | | |||||||| | ||| |||||||| |||| ||| | ||||| || | ||| Sbjct 5643 TGCAGTGATTGGCATGGAGATACCACATGGATGGGAGACCGTGTCATTACAAAGTCCACA 5702 Query 2856 CGAACCTGGGCCCTGCCCACCTACAACAACCACCTCTACAAGCAAATCTCCAACGGGACA 2915 || || || |||||||||||||||||||||| |||||| || ||| ||| | || Sbjct 5703 CGGACAGGGATCCTGCCCACCTACAACAACCACATCTACAGGCGGATCACCAGCTCCAC- 5761 Query 2916 TCGGGAGGAGCCACCAACGACAACACCTACTTCGGCTACAGCACCCCCTGGGGGTATTTT 2975 ||| | ||| ||||||||||||||||| || || | | ||||||| Sbjct 5762 -CGGCATCAGC----AACGACAACACCTACTTTGGTTAGG-------CGTGCTGTATTTT 5809 Query 2976 GACTTTAACAGATTCCACTGCCACTTTTCACCACGTGACTGGCAGCGACTCATCAACAAC 3035 ||||| ||| | |||||||||||||||| ||| || |||||| |||| ||| |||| ||| Sbjct 5810 GACTTCAACCGCTTCCACTGCCACTTTTTACCCCGAGACTGGAAGCGTCTCGTCAATAAC 5869 Query 3036 AACTGGGGATTCCGGCCCAAGAGACTCAGCTTCAAGCTCTTCAACATCCAGGTCAAGGAG 3095 | |||||| ||||||| ||| |||| | |||||| | |||| ||| || ||||||||| Sbjct 5870 AGCTGGGGTATCCGGCCTAAGCAACTCGGTTTCAAGTTATTCACCATACAAGTCAAGGAG 5929 Query 3096 GTCACGCAGAATGAA-GGCACCAAGACCATCGCCAATAACCTCACCAGCACCATCCAGGT 3154 |||||| | | | || |||| |||||||||||||||||||||||||||||||||||||| Sbjct 5930 GTCACG-ACAGTCAACAGCACAAAGACCATCGCCAATAACCTCACCAGCACCATCCAGGT 5988 Query 3155 GTTTACGG--ACTCGGAGTACCAGCTGCCGTACGTTCTCGGCTCTGCCCACCAGGGCTGC 3212 |||| || || |||| | ||||| || | | ||| ||||||| | || ||| Sbjct 5989 GTTTGTGGACACACGGACTGTCAGCTCCCACCCTTGACTGGCAATGCCCACGAAGGGTGC 6048 Query 3213 CTGCCTCCGTTCCCGGCGGACGTGTTCATGATTCCCCAGTACGGCTACCTAACACTCAAC 3272 || || || || || || |||| || ||| | || || ||| | || || || ||||| Sbjct 6049 CTACCCCCTTTTCCCGCCAACGTCTTTATGGTGCCTCAATACAGATAACTGACTTTCAAC 6108 Query 3273 AACGGTAGTCAGGCCGTGGGACGCTCCTCCTTCTACTGCCTGGAATACTTTCCTTCGCAG 3332 ||||| | | |||| | | ||| ||| || | ||| |||||| | Sbjct 6109 AACGGGCACAATGTCGTGCCCAGGAGCACCTACTATTGTCGGGAGCGCTTTCCCAGCAAA 6168 Query 3333 ATGCTGAGAACCGGCAACAACTTCCAGTTTACTTACACCTTCGAGGACGTGCCTTTCCAC 3392 ||||| ||||| ||||||||||| || || ||| ||||| || ||||| || Sbjct 6169 ATGCTAAGAACAGGCAACAACTTTGCCTTCGGCTATGACTTTGAGGAGGTACCTTTTCAG 6228 Query 3393 AGCAGCTACGCCCACAGCCAGAGCTTGGACCGGCTGATGAATCCTCTGATTGACCAGTAC 3452 | ||| |||||||| || |||||||||||||| | ||| | || ||||| Sbjct 6229 TCAATGTACATACACAGCCATGGCACTGACCGGCTGATGAACTCGCTGTTGAACTAGTAC 6288 Query 3453 CTGT 3456 ||| Sbjct 6289 TTGT 6292 Score = 197 bits (218), Expect = 4e-47 Identities = 225/297 (76%), Gaps = 4/297 (1%) Strand=Plus/Plus Query 3945 TGGCAGAACCGGGACGTGTACCTGCAGGGTCCCATCTGGGCCAAGATTCCTCACACGGAC 4004 ||||||||||| ||| | ||||| ||| | | |||||||||||| |||| ||||| ||| Sbjct 6761 TGGCAGAACCGAGACATCTACCTCCAGAGCCTGATCTGGGCCAAGGTTCCACACACTGAC 6820 Query 4005 GGCAACTTCCACCCGTCTCCGCTGATGGGCGGCTTTGGCCTGAAACATCCTCCGCCTCAG 4064 || |||| || | |||||| || ||||| || || || || || | | || | |||| Sbjct 6821 GGGCACTTTCATCTGTCTCCTCTCATGGGGGGATTCGGTCTCAAGAAGGCCCCTCTTCAG 6880 Query 4065 ATCCTGATCAAGAACACGCCTGTACCTGCGGATCCTCC-GACCACCTT-CAACCAGTCAA 4122 |||||| |||||||||| || || ||||| |||||||| | | || ||| | ||| | Sbjct 6881 ATCCTGGTCAAGAACACCCCGGTTCCTGCCGATCCTCCAGTGGAATTTACAAGC-GTC-A 6938 Query 4123 AGCTGAACTCTTTCATCACGCAATACAGCACCGGACAGGTCAGCGTGGAAATTGAATGGG 4182 |||| ||| |||||||| || || |||||| |||| | | |||||||||| ||| || Sbjct 6939 AGCTCAACAGCTTCATCACTCAGTATAGCACCAGACAAGAAACCGTGGAAATTAAATAGG 6998 Query 4183 AGCTGCAGAAGGAAAACAGCAAGCGCTGGAACCCCGAGATCCAGTACACCTCCAACT 4239 |||||||| ||| || |||| | |||||||| || || || ||||| ||||||| Sbjct 6999 AGCTGCAGCTGGAGGACTCCAAGAGGTGGAACCCAGAAATTCAATACACTTCCAACT 7055 Score = 138 bits (152), Expect = 3e-29 Identities = 307/457 (67%), Gaps = 39/457 (9%) Strand=Plus/Plus Query 2127 GCCGATGGTTATCTTCCAGATTGGCTCGAGGACAACCTCTCTGAGGGCATTCGCGAGTGG 2186 || ||||||||| || |||||||| | |||| | ||| ||| | ||| || |||| ||| Sbjct 4987 GCTGATGGTTATTTTACAGATTGGTTGGAGGGTACCCTTTCTAAAGGCTTTTGCGACTGG 5046 Query 2187 TGGGCGCTGAAACCTGGAGCCCCGAAGCCCAAAGCCAACCAGCAAAAGCAGGACGACGGC 2246 | | || ||||| || ||| || ||| || | || ||| | Sbjct 5047 TAGT-GCCCAAACC---------GAGGCCTAA------CCATTAACACCAAGACTCTGCT 5090 Query 2247 CGGGGTCTGGTGCTTCCTGGCTACAAGTACCTCGGACCCTTCAACGGACTCGACAAGGGG 2306 ||||||||||| ||||| || || || || ||||| ||| ||||| | || || || || Sbjct 5091 CGGGGTCTGGTCCTTCCGGGATATAAATATCTCGGTCCCCTCAACAGTCTGGATAAAGGA 5150 Query 2307 GAGCCCGTCAACGCGGCGGACGCAGCGGCCCTCGAGCACGACAAGGCCTACGACC---AG 2363 || | || ||| || ||||| |||| ||||| ||| | | || ||| || Sbjct 5151 GACGCGGTTAACAGAGCAGACGCCATTGCCCAAGAGCAGGAC---GTCAACCACCGCGAG 5207 Query 2364 CAGCTGCAGGCGGG----TGACAATCCGTACCTGCGGTATAACCACGCCGACGCCGAGTT 2419 |||||| ||||||| |||||||| ||||| || ||| || | ||| ||||| Sbjct 5208 CAGCTGGAGGCGGGAGACAGACAATCCTTACCTCAAGTCCAACTACACTGACCGAGAGTT 5267 Query 2420 TCAGGAGCGTCTGCAAGAAGATACGTCTTTTGGGGGCAACCTCGGGCGAGCAGTCTTCCA 2479 ||| || || || | || ||||||||| | |||||||| ||||||||||| Sbjct 5268 TCAAAAGAAGCTCTCTGACAACACCTCTTTTGGGCGTAACCTCGGAAAGGCAGTCTTCCA 5327 Query 2480 GGCCAAGAAGCGGGT-TC---TCGAACCTCTCGGTCTGGTTGAG---GAAGGCGCTAAGA 2532 |||||||||| | | || | || ||| | |||||| |||| || ||||||| || Sbjct 5328 GGCCAAGAAGAGTCTGTCTGTTTGAGCCTTTTAGTCTGGCTGAGTAAGAGGGCGCTACGA 5387 Query 2533 CGGCTCCTGGAAAGAAG------AGACCGGTAGAGCC 2563 | |||||||| ||||| |||||| | ||||| Sbjct 5388 CAGCTCCTGGGGAGAAGCGCGCTAGACCGATGGAGCC 5424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 13935923649330