Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= NC_006263.1 Length=4682 Score E Sequences producing significant alignments: (Bits) Value seq875 316 6e-83 seq615 282 1e-72 >seq875 Length=186252 Score = 316 bits (350), Expect = 6e-83 Identities = 528/744 (71%), Gaps = 32/744 (4%) Strand=Plus/Minus Query 907 TACATGGAGCTCGTGGATTGGCTCGTGGAGAAGGGGATCACCACCGAGAAGGAATGGCTG 966 |||||||||||||| | ||||| |||||||| || || || | |||| | ||||| | Sbjct 118267 TACATGGAGCTCGTTAACTGGCTGGTGGAGAACGGCATTACGTCAGAGA-GCAATGGATT 118209 Query 967 CTGGAAAACAGAGAAAGCTTTCGGAGCTTCCAG-GCCTCGAGCAACTCG-GCGCGTCAGA 1024 | ||| ||| || |||| | ||| || || || |||| | || || || | Sbjct 118208 CAGGAGAACC-AGGAAGCCTGTATCTCTTACAACGCGACGGGCAATGCCCGCTCG-CAAA 118151 Query 1025 TCAAGACGGCCCTGCAAGGCGCCATCCAGGAGATGCTTCTGACCAAGACGGCGGAGGACT 1084 ||||| |||| ||| | ||||| | | || |||||||||||||| ||||| Sbjct 118150 TCAAGTCGGCTCTGGACAACGCCAGCAAAATCGTGAGCCTGACCAAGACGGCCTCGGACT 118091 Query 1085 ACCTCGTCGGAAAAGAACCCGTCTCGGACGAC-GAGATTCGTC-AGAACCGCATCTACAA 1142 |||| ||||| |||| || | ||| ||| | |||||| || || Sbjct 118090 ACCTGGTCGG----------GTCTGCATCGCCAGAGCATCGAGGACAACCGCGTCCACCG 118041 Query 1143 GATTTTGGAACTGAACCACTACGACCCAGCGTACGTGGGGAGTATTTTGGTCGGGTGGTG 1202 || || | || ||| ||||||||| || || | || | || | || ||||| Sbjct 118040 CATCTTTCACCTCAACGGCTACGACCCGGCCTATGCCGGCTCAGTGGTGCTGGGCTGGTG 117981 Query 1203 CCAGAAGAAA-TGGGGCAAGCGAAACACGCTGTGGCTGTTCGGACCTGCGACCACCGGCA 1261 || ||||||| | ||||||||| ||||| | ||||| || | ||||||| |||| |||| Sbjct 117980 CC-GAAGAAAGTTGGGCAAGCGGAACACCGTCTGGCTCTTTGCACCTGCGCCCACGGGCA 117922 Query 1262 AGACCAACATCGCGGAGGCTATTGCCCATGCTGTGCCGTTCTATGGATGCGTTAACTGGA 1321 |||||||||| |||| ||||||||||||||||||||| || ||||| | || ||||||| Sbjct 117921 AGACCAACATTGCGGTGGCTATTGCCCATGCTGTGCCCTTTTATGGGCGTGTCAACTGGA 117862 Query 1322 CCAACGAGAACTTTCCGTTCAACGACTGCGTCGAAAAGATGATTATCTGGTGGGAAGAGG 1381 ||| ||||||||||| ||| | || || || || |||| | || | |||||| |||| Sbjct 117861 CCAGCGAGAACTTTCTCTTC-ATGATTGTGTGGACAAGACAGTGATTTTGTGGGAGGAGG 117803 Query 1382 GCAAAATGACCGCCAAGGTGGTGGAAACGGCTAAAGCGATTCTGGGAGGATCTCGG--GT 1439 |||| ||||| |||||||| |||| |||| || || || ||||| | ||||| || Sbjct 117802 GCAAGATGACGGCCAAGGTCATGGAGTCGGCCAAGGCCATCCTGGGGG---CTCGGCAGT 117746 Query 1440 GAGAGTGGACCAAAAATGCAAAGCTTCGGTTCCGATCGAACCGACGCCGGTCATTATTAC 1499 | |||||||||| |||||| |||| ||| | || ||||| || |||||||| || || Sbjct 117745 GTGAGTGGACCAGAAATGC-AAGCCTCGCAGCAGACTGAACCCACACCGGTCATCATCAC 117687 Query 1500 CAGTAACACCAACATGTGTTATGTCATCGACGGGAACACGACTACGTTCGAGCATAAGCA 1559 | |||||||||||||| |||| ||||| ||| ||| || || || || | || Sbjct 117686 CTCCAACACCAACATGTGCGTGGTCACTGACGGAAACTCGAAGACCTTTGAACACCAACA 117627 Query 1560 GCCGTTGGAGGACAGGATGTTTAAGCTCGAGCTG-TTGACTCGTTT--ACCCGATGACTT 1616 |||||| ||||| | ||||| ||| | || ||| | || ||||| | || ||||| Sbjct 117626 GCCGTTACAGGACCGCATGTTCAAGTTGGAACTGACTTAC-CGTTTGGAGCC--AGACTT 117570 Query 1617 TGGTAAGGTGACCAAACAGGAGGT 1640 ||| || ||||| || | |||||| Sbjct 117569 TGGGAAAGTGACTAAGCGGGAGGT 117546 Score = 275 bits (304), Expect = 2e-70 Identities = 763/1147 (67%), Gaps = 65/1147 (6%) Strand=Plus/Minus Query 2409 GGTCTCGTGTTCCCGGGTTACAAGTATCTAGGCCCTTTCAACGGTCTAGATAAAGGAAAA 2468 ||||| || | ||||| || || ||||| || || ||||| ||||| ||||| ||| | Sbjct 116874 GGTCTGGTCCTTCCGGGATATAAATATCTCGGACCGTTCAATGGTCTGGATAAGGGAGAC 116815 Query 2469 CCCGTCAACGAGGCAGACGCTGCCGCCTTAGAGCACGACAAGGCTTACGACCTCGAACTC 2528 | |||| |||||||| | ||| ||||||||| | |||| || | | ||| Sbjct 116814 CGGGTCAGTCGCGCAGACGCCGTCGCTCTAGAGCACGTC--GGCT-ACAGCGAGCAGCTC 116758 Query 2529 AAGGACGGGCACAACCCGTACTTTGAGTACAACGAGGCCGATAGACGTTTCCAGGAACGT 2588 ||| || ||||||| ||| | ||| |||| | ||||| ||| |||||||| Sbjct 116757 GAGGCGGGAGACAACCCCTACCTCAAGTGCAACCATGCCGACAGAGAATTCCAGGAGAAG 116698 Query 2589 CTCAAAGACGATACCTCTTTCGGAGGGAATCTCGGTAAAGCCATCTTTCAGGCCAAAAAG 2648 | | ||||| |||| ||| || | || ||||| | ||| ||||||||||||||||| Sbjct 116697 CACTCTGACGACACCTGTTTTGGGAGAAACCTCGGAAGAGCAGTCTTTCAGGCCAAAAAG 116638 Query 2649 AGGGTCCTCGAGCCCTTTGGTCTGATTGAACAACCCGACAACACGGCCGGGACCGGGGAG 2708 | | || ||||| ||||| || |||||| | || | ||| || || ||||| Sbjct 116637 CGACTGCTTGAGCCTTTTGGCCTCGTTGAACCAGAA-ACTCCTCGGA-GGCTCCTGGGAG 116580 Query 2709 -AAGCGTCCCGAAC--GCGTCGACGACTTTTTCCCGAAAAAGAAGAAGGCCAAGACCGAG 2765 ||| | ||| | | | || |||| | || ||| | | || || | | Sbjct 116579 CAAGAGGCCCCTCCCGGAGGAGAAGACT----CGGGAGAAACAGCGACCTCAGGAGCCAC 116524 Query 2766 CAAGGCAAAGCCCCTGCTCAAACGGGCGAAGACC-------CCGGAGAAGGAA------- 2811 |||| || |||| | || ||| || || || | |||||||| Sbjct 116523 CAAG--AACGCCCATA---AAGCGGCCGCAGCCCAATCAAACTAGAGAAGGAGGAGACTC 116469 Query 2812 --CCTCTTC------CAACGCTGGATC-AAGCGCCCC------CTCTAGTGTGGGATCAT 2856 ||||||| ||||| | ||| || || ||| | | || || || Sbjct 116468 TGCCTCTTCATATCCCAACG-TCCATCCAAACGTCCCTGTGCCCCCGCCTGCTGGGTCTG 116410 Query 2857 CTGTCATGGCTGAAGGAGGTGGCGGTCCA--ATGGGCGATGCAGGCCAAGGTGCCGACGG 2914 ||||||||| | |||||| ||| |||| | || ||| || || |||| ||| | Sbjct 116409 CTGTCATGGTTACAGGAGGCAGCGCTCCACCAAGGACGA--CATGCGG-GGTGACGATGC 116353 Query 2915 AGTGGGCAATTCCTCGGGAAATTGGCATTGCGATTCCCAATGGCTGGACAACGGAGTCGT 2974 |||||| | |||||||||||||||| |||| ||||| ||||| ||| |||| || | Sbjct 116352 AGTGGGGAGCTCCTCGGGAAATTGGCGTTGCAATTCCAAATGGATGGGCAACCACGTGCT 116293 Query 2975 TACCCGAACCACTCGAACCTGGGTCCTGCCCAGCTACAACAACCACTTGTACAAGCGGAT 3034 ||| || | | |||||||||||||||| ||||||| ||||| ||||||||| || Sbjct 116292 CACCGAGTCCGCCGGGACCTGGGTCCTGCCCA-CTACAACCACCACCAGTACAAGCGCAT 116234 Query 3035 CCAAGGACCGGGAGGAACCGACCCCAACAATAAATTCTTTGGATTCAGCACCCCCTGGGG 3094 | | | ||||| ||| | ||||| |||| | | | || || ||||| Sbjct 116233 CGACTCAAAGGGAGCCACCAGCAAGGACAAT---TTCTACAGCTACTCTACTCCGTGGGG 116177 Query 3095 GTACTTTGACTACAACCGATTCCACTGCCACTTCTCCCCCCGAGACTGGCAACGACTCAT 3154 |||||||||| ||| | ||||| | | |||| || |||||||||||||| | || | Sbjct 116176 ATACTTTGACTTTAAC-GCTTCCAGTACTACTTTTCACCCCGAGACTGGCAGTGCTTCGT 116118 Query 3155 CAACAACAACTGGGGCATCCGACCCAAAGCGA-TGCGCTTTAGACTCTTTAACATCCAGG 3213 ||| |||| ||||| || | |||| | || | ||| | || |||||| |||||| Sbjct 116117 CAAATACAATTGGGGTCTCTGGTCCAA-GAGACTTTCCTTCAAGCTGTTTAACGTCCAGG 116059 Query 3214 TTAAAGAAGTCACTGTCCAAGACTCCAACACCACCATCGCCAACAACCTCACCAGCACGG 3273 |||| || |||||| || || ||| |||||| |||| |||||||||||||| Sbjct 116058 TTAAGGAGGTCACTACGCAGGAGGGAGCCACGACCATCACCAATAACCTCACCAGCACCA 115999 Query 3274 TCCAAGTCTTTGCGGACAAGGACTACCAGCTGCCGTACGTCCTCGG-ATCGGCTACAGAG 3332 |||| |||||||||||| |||||||||| | | | |||| || || | || || ||| Sbjct 115998 TCCAGGTCTTTGCGGACTCGGACTACCAGGTCCTGCACGTGCTAGGCAACGCGCAC-GAG 115940 Query 3333 GGCACCTTCCCGCCGTTCCCAGCGGATATCTACACGATCCCGCAGTATGGTTACTGCACG 3392 || || | || || ||||| || || ||| |||| |||| ||||| | ||| |||| Sbjct 115939 GGAACGCTGCCTCCCTTCCCGGCCCATGTCTTCACGGTCCCCCAGTACGCCTACGACACG 115880 Query 3393 CTAAACTACAACAACGAGGCGGTGGATCGTTCGGC--CTTCTACTGTCTAGACTATTTCC 3450 || ||| || || | || | | ||| | || ||||||||| || || || | | Sbjct 115879 CTCAACAACGGGGACAACGCCGCAGCTCG--CAGCAGCTTCTACTGCCTCGAGTACATGC 115822 Query 3451 CCTCAGACATGCTGCGGACAGGAAATAACTTTGAATTCACTTACACGTTCGAGGACGTTC 3510 | | |||||||||| || || |||| | | ||| ||| ||| |||||||| | Sbjct 115821 CGAGCCAGATGCTGCGGATGGGCAACAACTACGCCTCCACGTACGAGTTTGAGGACGTAC 115762 Query 3511 CTTTCCA 3517 | || || Sbjct 115761 CCTTTCA 115755 Score = 95.1 bits (104), Expect = 4e-16 Identities = 203/298 (68%), Gaps = 4/298 (1%) Strand=Plus/Minus Query 4068 GGGATGGTGTGGCAAAACAGAGACATTTACCTCCAAGGACCCATTTGGGCCAAAATCCCC 4127 || ||||| ||||| ||| | | ||||||||| || || || || |||||||| || ||| Sbjct 115252 GGCATGGTCTGGCAGAACCGCGGCATTTACCTGCAGGGCCCGATCTGGGCCAAGATTCCC 115193 Query 4128 GACACAGACAATCACTTCCATCCGTCCCCGCTTATTGGCGGGTTTGGCTGCAAGCATCCC 4187 |||||| | |||||| ||||||||||| || || || || || | | || | | Sbjct 115192 CACACAGGCGGCAGCTTCCACCCGTCCCCGCTCATGGGAGGATTCGGGTTC-AGGAAGCT 115134 Query 4188 CCTCCCCAGATTTTCATTAAAAACACACCCGTCCCGGCCAACCCT-TCGGAAACGTTCCA 4246 ||||| |||| | |||| ||||| | | || || ||||| ||| || || || | Sbjct 115133 CCTCCTCAGA-TCTCATAAAAAATATGCTGGTTCCCGCCAATCCTCCCGTCGACTTTGCC 115075 Query 4247 GACGGCCAAGGTGGCCTCCTTCATCAACCAGTACTCGACCGGACAGTGCACCGTCGAAAT 4306 | | |||| | ||||||||||||| || || |||||| || || || | Sbjct 115074 CCCAG-CAAGTTCCAGAGCTTCATCAACCAGGACAGCACTGGACAGGTGACAGTAGAGCT 115016 Query 4307 CTTTTGGGAACTCAAGAAGGAAACCTCCAAGCGCTGGAACCCCGAAATCCAGTTCACC 4364 ||| | || || ||| ||| ||| ||||||||||||| | |||| |||| Sbjct 115015 TGAGTGGCAGCTGCAGCGGGAGGACTCGAAGTGCTGGAACCCCGAGGTGCAGTACACC 114958 >seq615 Length=480679 Score = 282 bits (312), Expect = 1e-72 Identities = 303/398 (76%), Gaps = 2/398 (1%) Strand=Plus/Plus Query 1186 ATTTTGGTCGGGTGGTGCCAGAAGAAATGGGGCAAGCGAAACACGCTGTGGCTGTTCGGA 1245 ||| || || |||||||||| || || | |||||| | ||| | | ||||| || ||| Sbjct 3920 ATTCTGCTCCGGTGGTGCCAAAA-AAGTTCGGCAAGAGGAACGCCATCTGGCTCTTTGGA 3978 Query 1246 CCTGCGACCACCGGCAAGACCAACATCGCGGAGGCTATTGCCCATGCTGTGCCGTTCTAT 1305 |||| ||||||||||||||||||||| |||||||||||||||||||| ||||| |||||| Sbjct 3979 CCTGTGACCACCGGCAAGACCAACATTGCGGAGGCTATTGCCCATGCCGTGCCCTTCTAT 4038 Query 1306 GGATGCGTTAACTGGACCAACGAGAACTTTCCGTTCAACGACTGCGTCGAAAAGATGATT 1365 || ||||| | ||||||||| ||||| ||||| || ||||||||| | || |||||| | Sbjct 4039 GGCTGCGTCAGCTGGACCAATGAGAATTTTCCCTT-AACGACTGCATGGACAAGATGGTG 4097 Query 1366 ATCTGGTGGGAAGAGGGCAAAATGACCGCCAAGGTGGTGGAAACGGCTAAAGCGATTCTG 1425 ||| ||||||| ||| |||| ||||| |||||||| ||||| | || || || || | Sbjct 4098 ATCCGGTGGGAGGAGTGCAAGATGACGGCCAAGGTCGTGGAGTCAGCCAAGGCCATCCGA 4157 Query 1426 GGAGGATCTCGGGTGAGAGTGGACCAAAAATGCAAAGCTTCGGTTCCGATCGAACCGACG 1485 || || ||| |||| ||| |||| |||||||| | | | | ||| || || || Sbjct 4158 GGGGGCTCTACGGTGCAAGTCAACCAGAAATGCAAGTCCTGGCAGCAGATTGACCCCACT 4217 Query 1486 CCGGTCATTATTACCAGTAACACCAACATGTGTTATGTCATCGACGGGAACACGACTACG 1545 | |||||| || ||| ||| |||| |||| ||||||||||||||| | | || Sbjct 4218 CTGGTCATCATCACCTCCTACATCAACGTGTGCGTGGTCATCGACGGGAACTCCATGACT 4277 Query 1546 TTCGAGCATAAGCAGCCGTTGGAGGACAGGATGTTTAA 1583 || || || |||||||| || |||| ||||||| || Sbjct 4278 TTTGAACACCAGCAGCCGCTGCAGGATTGGATGTTCAA 4315 Score = 158 bits (174), Expect = 4e-35 Identities = 311/447 (70%), Gaps = 26/447 (6%) Strand=Plus/Plus Query 2870 AGGAGGTGGCGGTCCAATGGGCGATGCAGGCCAAGGTG--CCGACGGAGTGGGCAATTCC 2927 |||||||||| ||| ||| | | || || |||| |||||||||||||| | || Sbjct 5588 AGGAGGTGGCTCACCAGTGGACAA--CATGC---GGTGTTCCGACGGAGTGGGCTCTGCC 5642 Query 2928 TCGGGAAATTGGCATTGCGATTCCCAATGGCTGGACAACGGAGTCGTTACCCGAACCACT 2987 | | |||||||| | ||| || |||| ||| || | ||| |||| |||| Sbjct 5643 TGCAGTGATTGGCATGGAGATACCACATGGATGGGAGACCGTGTCATTACAAAGTCCACA 5702 Query 2988 CGAACCTGGGTCCTGCCCAGCTACAACAACCACTTGTACAAGCGGATC-CAAGGACCGGG 3046 || || || ||||||||| ||||||||||||| | |||| ||||||| | || || Sbjct 5703 CGGACAGGGATCCTGCCCACCTACAACAACCACATCTACAGGCGGATCACCAGCTCCACC 5762 Query 3047 AGGAACCGACCCCAACAATAAATTCTTTGGATTCAGCACCCCCTGGGGGTACTTTGACTA 3106 | | | | | | |||| | | |||||| | || | | ||| ||||||| Sbjct 5763 GGCATCAG-CAACGACAACACCTACTTTGGTT--AGG-----CGTGCTGTATTTTGACTT 5814 Query 3107 CAACCGATTCCACTGCCACTTCTCCCCCCGAGACTGGCAACGACTCATCAACAACAACTG 3166 |||||| |||||||||||||| | |||||||||||| | || ||| |||| |||| ||| Sbjct 5815 CAACCGCTTCCACTGCCACTTTTTACCCCGAGACTGGAAGCGTCTCGTCAATAACAGCTG 5874 Query 3167 GGGCATCCGACCCAAAGCGATGCGCTTT-AGACTCTTTAACATCCAGGTTAAAGAAGTCA 3225 ||| ||||| || |||| | || ||| | | || | ||| || || || || |||| Sbjct 5875 GGGTATCCG-GCCTAAGCAACTCGGTTTCAAGTTATTCACCATACAAGTCAAGGAGGTCA 5933 Query 3226 CTGTCCAAGACTCCAACAC---CACCATCGCCAACAACCTCACCAGCACGGTCCAAGTCT 3282 | | | || | || ||| ||||||||||| |||||||||||||| |||| || | Sbjct 5934 C-GAC--AGTCAACAGCACAAAGACCATCGCCAATAACCTCACCAGCACCATCCAGGTGT 5990 Query 3283 TTGCGG--ACAAGGACTACCAGCTGCC 3307 ||| || ||| ||||| ||||| || Sbjct 5991 TTGTGGACACACGGACTGTCAGCTCCC 6017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14860081963845