Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04]
63,439 sequences; 2,073,344,508 total letters
Query= NC_014468.1
Length=4286
Score E
Sequences producing significant alignments: (Bits) Value
seq875 383 5e-103
seq615 352 8e-94
>seq875
Length=186252
Score = 383 bits (424), Expect = 5e-103
Identities = 502/694 (72%), Gaps = 26/694 (4%)
Strand=Plus/Minus
Query 2677 GGTGCCGATGGAGTGGGTAATGCCTCAGGAAATTGGCATTACGATTCCGTTTGGATGGAC 2736
|||| ||||| |||||| | |||| |||||||||| || | ||||| ||||||| |
Sbjct 116363 GGTGACGATGCAGTGGGGAGCTCCTCGGGAAATTGGCGTTGCAATTCCAAATGGATGGGC 116304
Query 2737 GGCGCTGTCATCACCAAGTCCACCCGAACCTGGAGCCTGCCCGCCTACAACAACCACCTC 2796
| || ||||| ||||| || | |||||| ||||||| | |||||| ||||||
Sbjct 116303 AACCACGTGCTCACCGAGTCCGCCGGGACCTGGGTCCTGCCCAC-TACAACCACCACCAG 116245
Query 2797 TACCGCCAGATCCAGTCCAGCGG---CACCGGAGACGGCACGTACTTTGGTTACAGCACG 2853
||| | ||| | || | || |||| | | | || | || | ||| ||
Sbjct 116244 TACAAGCGCATCGACTCAAAGGGAGCCACCAGCAAGGACAATTTCTACAGCTACTCTACT 116185
Query 2854 CCTTGGGGATACTTCGATTTCAATCGATTCCACTGCCACTTTTCTCCCAGGGACTGGCAG 2913
|| ||||||||||| || || || || ||||| | | ||||||| ||| | |||||||||
Sbjct 116184 CCGTGGGGATACTTTGACTTTAA-CGCTTCCAGTACTACTTTTCACCCCGAGACTGGCAG 116126
Query 2914 CGGCTCATCAACAACCACTGGGGCATCCGCCCCAAGCGGCTCCACTTTAAGCTCTTCAAC 2973
| || |||| || | ||||| || | ||||| | || ||| ||||| || |||
Sbjct 116125 TGCTTCGTCAAATACAATTGGGGTCTCTGGTCCAAGAGACTTTCCTTCAAGCTGTTTAAC 116066
Query 2974 ATCCAGGTCAAGGAGGTCACGACGACCGACGGCACCACGACCATCGCCAACAACCTCACC 3033
||||||| ||||||||||| ||| || || ||||||||||| |||| |||||||||
Sbjct 116065 GTCCAGGTTAAGGAGGTCACTACGCAGGAGGGAGCCACGACCATCACCAATAACCTCACC 116006
Query 3034 AGCACCATACAGGTCTTTGCGGACACGGAGTACCAGCTCCCGTACGTGCTCGGCAACGCC 3093
|||||||| ||||||||||||||| |||| |||||| ||| | ||||||| ||||||||
Sbjct 116005 AGCACCATCCAGGTCTTTGCGGACTCGGACTACCAGGTCCTGCACGTGCTAGGCAACGCG 115946
Query 3094 CACGAGGGCTGCCTGCCGCCGTTCCCGGCGGACGTCTTCATGCTGCCGCAGTACGCGTAC 3153
|||||||| ||||| || |||||||| | ||||||| | | || |||||||| |||
Sbjct 115945 CACGAGGGAACGCTGCCTCCCTTCCCGGCCCATGTCTTCACGGTCCCCCAGTACGCCTAC 115886
Query 3154 CTGACGCTCAACGCCAACCCCACGAACCAGGGCGCGGCCGCGCTCAGCCTGCCGCAGAGC 3213
||||||||| ||| || | |||| |||| || ||||
Sbjct 115885 GACACGCTCAAC------------AACGGGGACAACGCCG----CAGCTCGCAGCAG--- 115845
Query 3214 GCCTTCTACTGCCTGGAGTACTTTCCGAGCCAGATGCTGAGGACCGGGAACAACTTCTCG 3273
|||||||||||| |||||| | ||||||||||||||| ||| || ||||||| | |
Sbjct 115844 --CTTCTACTGCCTCGAGTACATGCCGAGCCAGATGCTGCGGATGGGCAACAACTACGCC 115787
Query 3274 TTCAGCTACGAGTTCGAGAAGCTGCCCTTCCACTCGATGTTCATGCACAGCCAGAGCCTG 3333
| || |||||||| ||| | | ||||| |||||||||| ||||||| ||||||| ||
Sbjct 115786 TCCACGTACGAGTTTGAGGACGTACCCTTTCACTCGATGTACATGCACCTCCAGAGCATG 115727
Query 3334 GACCGGCTCATGAACCCGCTCATCGACCAGTACC 3367
||| || | |||||| |||| |||| |||||
Sbjct 115726 CACCACCTGGTTAACCCGTTCATGGACCGGTACC 115693
Score = 352 bits (390), Expect = 8e-94
Identities = 525/737 (71%), Gaps = 24/737 (3%)
Strand=Plus/Minus
Query 848 TACATGGCGCTCGTCAGGTGGCTCGTGGACAACGGCATCGCGACCGAGCGCGAGTGGATG 907
||||||| |||||| | ||||| ||||| |||||||| || | ||| || | |||||
Sbjct 118267 TACATGGAGCTCGTTAACTGGCTGGTGGAGAACGGCATTACGTCAGAGAGCAA-TGGATT 118209
Query 908 CGCGAGGACTCGGACGG--GTACCTGAGCTACAACGCCACGGGCGCCACGCGCGCCCAGA 965
| ||| || ||| | ||| || |||||||| |||||| | ||| | || |
Sbjct 118208 CAGGAGAACCAGGAAGCCTGTATCTCT--TACAACGCGACGGGCAATGCCCGCTCGCAAA 118151
Query 966 TCAAGGCCGCGCTCGACAACGCGGCCCGCATCATGGTCAAC---ACGAAGACGGCCGCCG 1022
||||| | || || |||||||| | ||| || || | | || ||||||||| | |
Sbjct 118150 TCAAGTCGGCTCTGGACAACGC---CAGCAAAATCGTGAGCCTGACCAAGACGGCCTCGG 118094
Query 1023 ACTACCTGGTCGG--CAGGAACCCGCCCCTCGA-CGTGGAGGACAACAGGATCTACCGGC 1079
||||||||||||| | | | | ||| || | | ||||||||| | || ||||
Sbjct 118093 ACTACCTGGTCGGGTCTGCATC--GCCA---GAGCATCGAGGACAACCGCGTCCACCGCA 118039
Query 1080 TGTTTCGCATGAACGGCTACGACCCCGCCTACGCGGGCAGCGTGCTGCTCGGCTGGTGCC 1139
| |||| | | |||||||||||||| ||||| || ||| ||| |||| ||||||||||
Sbjct 118038 TCTTTCACCTCAACGGCTACGACCCGGCCTATGCCGGCTCAGTGGTGCTGGGCTGGTGCC 117979
Query 1140 GCACCGGCTTCGGCAAGCGCAACACCGTCTGGCTCTTCGGGCCGGCCACGACCGGCAAGA 1199
| | || |||||||| ||||||||||||||||| | || || | || |||||||
Sbjct 117978 GAAGAAAGTTGGGCAAGCGGAACACCGTCTGGCTCTTTGCACCTGCGCCCACGGGCAAGA 117919
Query 1200 CGAACCTCGCCGAGGCCATCAGCCACTCGGTGCCCTTCTACGGCTGCGTCAACTGGACCA 1259
| ||| | || | ||| || ||| | |||||||| || || | |||||||||||||
Sbjct 117918 CCAACATTGCGGTGGCTATTGCCCATGCTGTGCCCTTTTATGGGCGTGTCAACTGGACCA 117859
Query 1260 ACGAGAACTTCCCCTTCAACGACTGCGTGGACAAGATGATCATCTGGTGGGAGGAGGGCA 1319
||||||||| | |||| | || || |||||||||| | || | ||||||||||||||
Sbjct 117858 GCGAGAACTTTCTCTTC-ATGATTGTGTGGACAAGACAGTGATTTTGTGGGAGGAGGGCA 117800
Query 1320 AGATGACGTCCAAGGTCGTCGAGAGCGCCAAGGCCATCCTCGGCG-GCAGCAAGGTGCGC 1378
|||||||| |||||||| | ||| |||||||||||||| || | | ||| ||| |
Sbjct 117799 AGATGACGGCCAAGGTCATGGAGTCGGCCAAGGCCATCCTGGGGGCTCGGCA--GTGTGA 117742
Query 1379 GTCGACCAGAAGTGCAAGAACTCGCAGCAGATCGAGCCCACGCCCGTCATNNNNNNNNNN 1438
|| |||||||| |||||| ||||||||||| || ||||| || |||||
Sbjct 117741 GTGGACCAGAAATGCAAG-CCTCGCAGCAGACTGAACCCACACCGGTCATCATCACCTCC 117683
Query 1439 NNNNNNNACATGTGCGAGGTCGTCGACGGGAACTCGACCACGTTCGAGCACCGGCAGCCG 1498
||||||||| |||| ||||| ||||||| || || || |||| ||||||
Sbjct 117682 AACACCAACATGTGCGTGGTCACTGACGGAAACTCGAAGACCTTTGAACACCAACAGCCG 117623
Query 1499 CTCGAGGACAGGATGTTCAAGTTCGAGCTCACCGTCAGGCTGCAGCCCACCTTCGGCAAG 1558
| ||||| | ||||||||||| || || || | | || |||| ||| || ||
Sbjct 117622 TTACAGGACCGCATGTTCAAGTTGGAACTGACTTACCGTTTGGAGCCAGACTTTGGGAAA 117563
Query 1559 ATCACCAAGCAGGAGGT 1575
| || |||| ||||||
Sbjct 117562 GTGACTAAGCGGGAGGT 117546
Score = 196 bits (216), Expect = 1e-46
Identities = 227/300 (76%), Gaps = 6/300 (2%)
Strand=Plus/Minus
Query 3831 GGGCATGGTCTGGCAGGACCGCGACATCTACCTGCAGGGCCCGATATGGGCCAAGATCCC 3890
|||||||||||||||| |||||| ||| ||||||||||||||||| ||||||||||| ||
Sbjct 115253 GGGCATGGTCTGGCAGAACCGCGGCATTTACCTGCAGGGCCCGATCTGGGCCAAGATTCC 115194
Query 3891 GGAGACGGACGGCCACTTCCACCCGTCCCCGCTCATGGGCGGCTTCGGGCTCAAGAACCC 3950
| || | |||| |||||||||||||||||||||||| || |||||| ||| ||| |
Sbjct 115193 CCACACAGGCGGCAGCTTCCACCCGTCCCCGCTCATGGGAGGATTCGGGTTCAGGAA-GC 115135
Query 3951 GCCGCCGCAGATCCTCGTCAAGAACACGCCCGTGCCCGCCGTGCCGCCC-ACGACCTT-C 4008
|| || ||||| ||| | || || | || || |||||| || ||| |||| || |
Sbjct 115134 TCCTCCTCAGAT-CTCATAAAAAATATGCTGGTTCCCGCCAATCCTCCCGTCGACTTTGC 115076
Query 4009 ACACCGCAGAAGGTCAACTCCTTCATCACGCAGTACTCCACCGGCCAGGTCACCGTCGAG 4068
| | || ||| || | |||||||| ||| || ||| || ||||| || || |||
Sbjct 115075 CCCCAGC--AAGTTCCAGAGCTTCATCAACCAGGACAGCACTGGACAGGTGACAGTAGAG 115018
Query 4069 ATCGAGTGGGAGCTGCGCAAGGAGAAGAGCAAGCGCTGGAACCCCGAGATCCAGTACACC 4128
| |||||| |||||| |||| | ||| |||||||||||||| | |||||||||
Sbjct 115017 CTTGAGTGGCAGCTGCAGCGGGAGGACTCGAAGTGCTGGAACCCCGAGGTGCAGTACACC 114958
>seq615
Length=480679
Score = 352 bits (390), Expect = 8e-94
Identities = 529/744 (71%), Gaps = 47/744 (6%)
Strand=Plus/Plus
Query 2641 GCGGGTGGTGGCGGACCAGTGGGCGACGATGCACAAGGTG--CCGATGGAGTGGGTAATG 2698
|| || |||||| |||||||| | || |||| |||| |||| |||||||| ||
Sbjct 5586 GCAGGAGGTGGCTCACCAGTGGACAAC-ATGC----GGTGTTCCGACGGAGTGGGCTCTG 5640
Query 2699 CCTCAGGAAATTGGCATTACGATTCCGTTTGGATGGACGGCGCTGTCATCACCAAGTCCA 2758
||| | |||||||| ||| || ||||||| | | |||||| || |||||||
Sbjct 5641 CCTGCAGTGATTGGCATGGAGATACCACATGGATGGGAGACCGTGTCATTACAAAGTCCA 5700
Query 2759 CCCGAACCTGGAGCCTGCCCGCCTACAACAACCACCTCTACCGCCAGATC--CAG-TCCA 2815
| || || ||| ||||||| |||||||||||||| ||||| | | |||| ||| ||||
Sbjct 5701 CACGGACAGGGATCCTGCCCACCTACAACAACCACATCTACAGGCGGATCACCAGCTCCA 5760
Query 2816 GCGGCACCGGAGACGGCA---CGTACTTTGGTTACAGCACGCCTTGGGGATACTTCGATT 2872
||||| | | ||| || | ||||||||||| || || || || || || |
Sbjct 5761 CCGGCATCAGCAACGACAACACCTACTTTGGTTAG-GCGTGC--TG----TATTTTGACT 5813
Query 2873 TCAATCGATTCCACTGCCACTTTTCTCCCAGGGACTGGCAGCGGCTCATCAACAACCACT 2932
|||| || |||||||||||||||| ||| | |||||| |||| ||| |||| ||| ||
Sbjct 5814 TCAACCGCTTCCACTGCCACTTTTTACCCCGAGACTGGAAGCGTCTCGTCAATAACAGCT 5873
Query 2933 GGGGCATCCGCCCCAAGCGGCTCCACTTTAAGCTCTTCAACATCCAGGTCAAGGAGGTCA 2992
|||| ||||| || |||| ||| || ||| | |||| ||| || |||||||||||||
Sbjct 5874 GGGGTATCCGGCCTAAGCAACTCGGTTTCAAGTTATTCACCATACAAGTCAAGGAGGTCA 5933
Query 2993 CGACGACCGACGGCACCACGACCATCGCCAACAACCTCACCAGCACCATACAGGTCTTTG 3052
|||| | || |||| | |||||||||||| ||||||||||||||||| ||||| ||||
Sbjct 5934 CGACAGTCAACAGCACAAAGACCATCGCCAATAACCTCACCAGCACCATCCAGGTGTTTG 5993
Query 3053 CGG--ACACGGAGTACCAGCTCCCGTACGTGCTCGGCAACGCCCACGAGGGCTGCCTGCC 3110
|| ||||||| | |||||||| | || ||||| |||||||| || ||||| ||
Sbjct 5994 TGGACACACGGACTGTCAGCTCCCACCCTTGACTGGCAATGCCCACGAAGGGTGCCTACC 6053
Query 3111 GCCGTTCCCGGCGGACGTCTTCATGCTGCCGCAGTACGCGTACCTGACGCTCAACGCCAA 3170
|| || || || ||||||| ||| |||| || ||| || ||||| |||| |||
Sbjct 6054 CCCTTTTCCCGCCAACGTCTTTATGGTGCCTCAATACAGATAACTGACTTTCAA---CAA 6110
Query 3171 CCCCACGAACCAGGGCGC--GGCCGCGCTCAGCCTGCCGCAGAGCGCCTTCTACTGCCTG 3228
| |||| | | || || ||| |||| ||| ||| || | |
Sbjct 6111 C-----------GGGCACAATGTCGTGCCCAG---------GAGCACCTACTATTGTCGG 6150
Query 3229 GAGTACTTTCCGAGCCAGATGCTGAGGACCGGGAACAACTTCTCGTTCAGCTACGAGTTC 3288
||| |||||| ||| | ||||| || || || |||||||| | ||| |||| || ||
Sbjct 6151 GAGCGCTTTCCCAGCAAAATGCTAAGAACAGGCAACAACTTTGCCTTCGGCTATGACTTT 6210
Query 3289 GAGAAGCTGCCCTTCCACTCGATGTTCATGCACAGCCAGAGCCTGGACCGGCTCATGAAC 3348
||| || | || || || || |||| ||| |||||||| || |||||||| ||||||
Sbjct 6211 GAGGAGGTACCTTTTCAGTCAATGTACATACACAGCCATGGCACTGACCGGCTGATGAAC 6270
Query 3349 CCGCTCATCGACCAGTACCTCTGG 3372
|||| | || ||||| | |||
Sbjct 6271 TCGCTGTTGAACTAGTACTTGTGG 6294
Score = 311 bits (344), Expect = 2e-81
Identities = 333/443 (75%), Gaps = 2/443 (0%)
Strand=Plus/Plus
Query 1088 ATGAACGGCTACGACCCCGCCTACGCGGGCAGCGTGCTGCTCGGCTGGTGCCGCACCGGC 1147
||||| ||||| ||| | |||| ||| || | | |||||| | ||||||| | |
Sbjct 3887 ATGAATGGCTATGACGCGGCCTGCGCCAGCTCCATTCTGCTCCGGTGGTGCCAAAAAAG- 3945
Query 1148 TTCGGCAAGCGCAACACCGTCTGGCTCTTCGGGCCGGCCACGACCGGCAAGACGAACCTC 1207
||||||||| | ||| || |||||||||| || || | || ||||||||||| ||| |
Sbjct 3946 TTCGGCAAGAGGAACGCCATCTGGCTCTTTGGACCTGTGACCACCGGCAAGACCAACATT 4005
Query 1208 GCCGAGGCCATCAGCCACTCGGTGCCCTTCTACGGCTGCGTCAACTGGACCAACGAGAAC 1267
|| ||||| || ||| | ||||||||||| |||||||||| ||||||||| |||||
Sbjct 4006 GCGGAGGCTATTGCCCATGCCGTGCCCTTCTATGGCTGCGTCAGCTGGACCAATGAGAAT 4065
Query 1268 TTCCCCTTCAACGACTGCGTGGACAAGATGATCATCTGGTGGGAGGAGGGCAAGATGACG 1327
|| ||||| ||||||||| ||||||||||| | ||| ||||||||||| |||||||||||
Sbjct 4066 TTTCCCTT-AACGACTGCATGGACAAGATGGTGATCCGGTGGGAGGAGTGCAAGATGACG 4124
Query 1328 TCCAAGGTCGTCGAGAGCGCCAAGGCCATCCTCGGCGGCAGCAAGGTGCGCGTCGACCAG 1387
|||||||||| ||| ||||||||||||| || ||| | ||||| ||| |||||
Sbjct 4125 GCCAAGGTCGTGGAGTCAGCCAAGGCCATCCGAGGGGGCTCTACGGTGCAAGTCAACCAG 4184
Query 1388 AAGTGCAAGAACTCGCAGCAGATCGAGCCCACGCCCGTCATNNNNNNNNNNNNNNNNNAC 1447
|| |||||| || ||||||||| || ||||| | ||||| ||
Sbjct 4185 AAATGCAAGTCCTGGCAGCAGATTGACCCCACTCTGGTCATCATCACCTCCTACATCAAC 4244
Query 1448 ATGTGCGAGGTCGTCGACGGGAACTCGACCACGTTCGAGCACCGGCAGCCGCTCGAGGAC 1507
|||||| |||| ||||||||||||| | || || || |||| ||||||||| ||||
Sbjct 4245 GTGTGCGTGGTCATCGACGGGAACTCCATGACTTTTGAACACCAGCAGCCGCTGCAGGAT 4304
Query 1508 AGGATGTTCAAGTTCGAGCTCAC 1530
|||||||||| || || || ||
Sbjct 4305 TGGATGTTCAAATTTGAACTAAC 4327
Score = 174 bits (192), Expect = 4e-40
Identities = 224/309 (72%), Gaps = 0/309 (0%)
Strand=Plus/Plus
Query 3829 CCGGGCATGGTCTGGCAGGACCGCGACATCTACCTGCAGGGCCCGATATGGGCCAAGATC 3888
|| |||||| |||||| |||| ||||||||||| ||| ||| ||| ||||||||| |
Sbjct 6749 CCTGGCATGAATTGGCAGAACCGAGACATCTACCTCCAGAGCCTGATCTGGGCCAAGGTT 6808
Query 3889 CCGGAGACGGACGGCCACTTCCACCCGTCCCCGCTCATGGGCGGCTTCGGGCTCAAGAAC 3948
|| | || ||||| ||||| || | ||| || |||||||| || ||||| ||||||||
Sbjct 6809 CCACACACTGACGGGCACTTTCATCTGTCTCCTCTCATGGGGGGATTCGGTCTCAAGAAG 6868
Query 3949 CCGCCGCCGCAGATCCTCGTCAAGAACACGCCCGTGCCCGCCGTGCCGCCCACGACCTTC 4008
| || | |||||||| ||||||||||| || || || |||| || || | ||
Sbjct 6869 GCCCCTCTTCAGATCCTGGTCAAGAACACCCCGGTTCCTGCCGATCCTCCAGTGGAATTT 6928
Query 4009 ACACCGCAGAAGGTCAACTCCTTCATCACGCAGTACTCCACCGGCCAGGTCACCGTCGAG 4068
||| ||| ||||| ||||||||| ||||| |||| | || | ||||| ||
Sbjct 6929 ACAAGCGTCAAGCTCAACAGCTTCATCACTCAGTATAGCACCAGACAAGAAACCGTGGAA 6988
Query 4069 ATCGAGTGGGAGCTGCGCAAGGAGAAGAGCAAGCGCTGGAACCCCGAGATCCAGTACACC 4128
|| | | |||||||| |||| | |||| | |||||||| || || || |||||
Sbjct 6989 ATTAAATAGGAGCTGCAGCTGGAGGACTCCAAGAGGTGGAACCCAGAAATTCAATACACT 7048
Query 4129 TCCAACTTC 4137
|||||||||
Sbjct 7049 TCCAACTTC 7057
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 13593761228385
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