Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= NC_014468.1 Length=4286 Score E Sequences producing significant alignments: (Bits) Value seq875 383 5e-103 seq615 352 8e-94 >seq875 Length=186252 Score = 383 bits (424), Expect = 5e-103 Identities = 502/694 (72%), Gaps = 26/694 (4%) Strand=Plus/Minus Query 2677 GGTGCCGATGGAGTGGGTAATGCCTCAGGAAATTGGCATTACGATTCCGTTTGGATGGAC 2736 |||| ||||| |||||| | |||| |||||||||| || | ||||| ||||||| | Sbjct 116363 GGTGACGATGCAGTGGGGAGCTCCTCGGGAAATTGGCGTTGCAATTCCAAATGGATGGGC 116304 Query 2737 GGCGCTGTCATCACCAAGTCCACCCGAACCTGGAGCCTGCCCGCCTACAACAACCACCTC 2796 | || ||||| ||||| || | |||||| ||||||| | |||||| |||||| Sbjct 116303 AACCACGTGCTCACCGAGTCCGCCGGGACCTGGGTCCTGCCCAC-TACAACCACCACCAG 116245 Query 2797 TACCGCCAGATCCAGTCCAGCGG---CACCGGAGACGGCACGTACTTTGGTTACAGCACG 2853 ||| | ||| | || | || |||| | | | || | || | ||| || Sbjct 116244 TACAAGCGCATCGACTCAAAGGGAGCCACCAGCAAGGACAATTTCTACAGCTACTCTACT 116185 Query 2854 CCTTGGGGATACTTCGATTTCAATCGATTCCACTGCCACTTTTCTCCCAGGGACTGGCAG 2913 || ||||||||||| || || || || ||||| | | ||||||| ||| | ||||||||| Sbjct 116184 CCGTGGGGATACTTTGACTTTAA-CGCTTCCAGTACTACTTTTCACCCCGAGACTGGCAG 116126 Query 2914 CGGCTCATCAACAACCACTGGGGCATCCGCCCCAAGCGGCTCCACTTTAAGCTCTTCAAC 2973 | || |||| || | ||||| || | ||||| | || ||| ||||| || ||| Sbjct 116125 TGCTTCGTCAAATACAATTGGGGTCTCTGGTCCAAGAGACTTTCCTTCAAGCTGTTTAAC 116066 Query 2974 ATCCAGGTCAAGGAGGTCACGACGACCGACGGCACCACGACCATCGCCAACAACCTCACC 3033 ||||||| ||||||||||| ||| || || ||||||||||| |||| ||||||||| Sbjct 116065 GTCCAGGTTAAGGAGGTCACTACGCAGGAGGGAGCCACGACCATCACCAATAACCTCACC 116006 Query 3034 AGCACCATACAGGTCTTTGCGGACACGGAGTACCAGCTCCCGTACGTGCTCGGCAACGCC 3093 |||||||| ||||||||||||||| |||| |||||| ||| | ||||||| |||||||| Sbjct 116005 AGCACCATCCAGGTCTTTGCGGACTCGGACTACCAGGTCCTGCACGTGCTAGGCAACGCG 115946 Query 3094 CACGAGGGCTGCCTGCCGCCGTTCCCGGCGGACGTCTTCATGCTGCCGCAGTACGCGTAC 3153 |||||||| ||||| || |||||||| | ||||||| | | || |||||||| ||| Sbjct 115945 CACGAGGGAACGCTGCCTCCCTTCCCGGCCCATGTCTTCACGGTCCCCCAGTACGCCTAC 115886 Query 3154 CTGACGCTCAACGCCAACCCCACGAACCAGGGCGCGGCCGCGCTCAGCCTGCCGCAGAGC 3213 ||||||||| ||| || | |||| |||| || |||| Sbjct 115885 GACACGCTCAAC------------AACGGGGACAACGCCG----CAGCTCGCAGCAG--- 115845 Query 3214 GCCTTCTACTGCCTGGAGTACTTTCCGAGCCAGATGCTGAGGACCGGGAACAACTTCTCG 3273 |||||||||||| |||||| | ||||||||||||||| ||| || ||||||| | | Sbjct 115844 --CTTCTACTGCCTCGAGTACATGCCGAGCCAGATGCTGCGGATGGGCAACAACTACGCC 115787 Query 3274 TTCAGCTACGAGTTCGAGAAGCTGCCCTTCCACTCGATGTTCATGCACAGCCAGAGCCTG 3333 | || |||||||| ||| | | ||||| |||||||||| ||||||| ||||||| || Sbjct 115786 TCCACGTACGAGTTTGAGGACGTACCCTTTCACTCGATGTACATGCACCTCCAGAGCATG 115727 Query 3334 GACCGGCTCATGAACCCGCTCATCGACCAGTACC 3367 ||| || | |||||| |||| |||| ||||| Sbjct 115726 CACCACCTGGTTAACCCGTTCATGGACCGGTACC 115693 Score = 352 bits (390), Expect = 8e-94 Identities = 525/737 (71%), Gaps = 24/737 (3%) Strand=Plus/Minus Query 848 TACATGGCGCTCGTCAGGTGGCTCGTGGACAACGGCATCGCGACCGAGCGCGAGTGGATG 907 ||||||| |||||| | ||||| ||||| |||||||| || | ||| || | ||||| Sbjct 118267 TACATGGAGCTCGTTAACTGGCTGGTGGAGAACGGCATTACGTCAGAGAGCAA-TGGATT 118209 Query 908 CGCGAGGACTCGGACGG--GTACCTGAGCTACAACGCCACGGGCGCCACGCGCGCCCAGA 965 | ||| || ||| | ||| || |||||||| |||||| | ||| | || | Sbjct 118208 CAGGAGAACCAGGAAGCCTGTATCTCT--TACAACGCGACGGGCAATGCCCGCTCGCAAA 118151 Query 966 TCAAGGCCGCGCTCGACAACGCGGCCCGCATCATGGTCAAC---ACGAAGACGGCCGCCG 1022 ||||| | || || |||||||| | ||| || || | | || ||||||||| | | Sbjct 118150 TCAAGTCGGCTCTGGACAACGC---CAGCAAAATCGTGAGCCTGACCAAGACGGCCTCGG 118094 Query 1023 ACTACCTGGTCGG--CAGGAACCCGCCCCTCGA-CGTGGAGGACAACAGGATCTACCGGC 1079 ||||||||||||| | | | | ||| || | | ||||||||| | || |||| Sbjct 118093 ACTACCTGGTCGGGTCTGCATC--GCCA---GAGCATCGAGGACAACCGCGTCCACCGCA 118039 Query 1080 TGTTTCGCATGAACGGCTACGACCCCGCCTACGCGGGCAGCGTGCTGCTCGGCTGGTGCC 1139 | |||| | | |||||||||||||| ||||| || ||| ||| |||| |||||||||| Sbjct 118038 TCTTTCACCTCAACGGCTACGACCCGGCCTATGCCGGCTCAGTGGTGCTGGGCTGGTGCC 117979 Query 1140 GCACCGGCTTCGGCAAGCGCAACACCGTCTGGCTCTTCGGGCCGGCCACGACCGGCAAGA 1199 | | || |||||||| ||||||||||||||||| | || || | || ||||||| Sbjct 117978 GAAGAAAGTTGGGCAAGCGGAACACCGTCTGGCTCTTTGCACCTGCGCCCACGGGCAAGA 117919 Query 1200 CGAACCTCGCCGAGGCCATCAGCCACTCGGTGCCCTTCTACGGCTGCGTCAACTGGACCA 1259 | ||| | || | ||| || ||| | |||||||| || || | ||||||||||||| Sbjct 117918 CCAACATTGCGGTGGCTATTGCCCATGCTGTGCCCTTTTATGGGCGTGTCAACTGGACCA 117859 Query 1260 ACGAGAACTTCCCCTTCAACGACTGCGTGGACAAGATGATCATCTGGTGGGAGGAGGGCA 1319 ||||||||| | |||| | || || |||||||||| | || | |||||||||||||| Sbjct 117858 GCGAGAACTTTCTCTTC-ATGATTGTGTGGACAAGACAGTGATTTTGTGGGAGGAGGGCA 117800 Query 1320 AGATGACGTCCAAGGTCGTCGAGAGCGCCAAGGCCATCCTCGGCG-GCAGCAAGGTGCGC 1378 |||||||| |||||||| | ||| |||||||||||||| || | | ||| ||| | Sbjct 117799 AGATGACGGCCAAGGTCATGGAGTCGGCCAAGGCCATCCTGGGGGCTCGGCA--GTGTGA 117742 Query 1379 GTCGACCAGAAGTGCAAGAACTCGCAGCAGATCGAGCCCACGCCCGTCATNNNNNNNNNN 1438 || |||||||| |||||| ||||||||||| || ||||| || ||||| Sbjct 117741 GTGGACCAGAAATGCAAG-CCTCGCAGCAGACTGAACCCACACCGGTCATCATCACCTCC 117683 Query 1439 NNNNNNNACATGTGCGAGGTCGTCGACGGGAACTCGACCACGTTCGAGCACCGGCAGCCG 1498 ||||||||| |||| ||||| ||||||| || || || |||| |||||| Sbjct 117682 AACACCAACATGTGCGTGGTCACTGACGGAAACTCGAAGACCTTTGAACACCAACAGCCG 117623 Query 1499 CTCGAGGACAGGATGTTCAAGTTCGAGCTCACCGTCAGGCTGCAGCCCACCTTCGGCAAG 1558 | ||||| | ||||||||||| || || || | | || |||| ||| || || Sbjct 117622 TTACAGGACCGCATGTTCAAGTTGGAACTGACTTACCGTTTGGAGCCAGACTTTGGGAAA 117563 Query 1559 ATCACCAAGCAGGAGGT 1575 | || |||| |||||| Sbjct 117562 GTGACTAAGCGGGAGGT 117546 Score = 196 bits (216), Expect = 1e-46 Identities = 227/300 (76%), Gaps = 6/300 (2%) Strand=Plus/Minus Query 3831 GGGCATGGTCTGGCAGGACCGCGACATCTACCTGCAGGGCCCGATATGGGCCAAGATCCC 3890 |||||||||||||||| |||||| ||| ||||||||||||||||| ||||||||||| || Sbjct 115253 GGGCATGGTCTGGCAGAACCGCGGCATTTACCTGCAGGGCCCGATCTGGGCCAAGATTCC 115194 Query 3891 GGAGACGGACGGCCACTTCCACCCGTCCCCGCTCATGGGCGGCTTCGGGCTCAAGAACCC 3950 | || | |||| |||||||||||||||||||||||| || |||||| ||| ||| | Sbjct 115193 CCACACAGGCGGCAGCTTCCACCCGTCCCCGCTCATGGGAGGATTCGGGTTCAGGAA-GC 115135 Query 3951 GCCGCCGCAGATCCTCGTCAAGAACACGCCCGTGCCCGCCGTGCCGCCC-ACGACCTT-C 4008 || || ||||| ||| | || || | || || |||||| || ||| |||| || | Sbjct 115134 TCCTCCTCAGAT-CTCATAAAAAATATGCTGGTTCCCGCCAATCCTCCCGTCGACTTTGC 115076 Query 4009 ACACCGCAGAAGGTCAACTCCTTCATCACGCAGTACTCCACCGGCCAGGTCACCGTCGAG 4068 | | || ||| || | |||||||| ||| || ||| || ||||| || || ||| Sbjct 115075 CCCCAGC--AAGTTCCAGAGCTTCATCAACCAGGACAGCACTGGACAGGTGACAGTAGAG 115018 Query 4069 ATCGAGTGGGAGCTGCGCAAGGAGAAGAGCAAGCGCTGGAACCCCGAGATCCAGTACACC 4128 | |||||| |||||| |||| | ||| |||||||||||||| | ||||||||| Sbjct 115017 CTTGAGTGGCAGCTGCAGCGGGAGGACTCGAAGTGCTGGAACCCCGAGGTGCAGTACACC 114958 >seq615 Length=480679 Score = 352 bits (390), Expect = 8e-94 Identities = 529/744 (71%), Gaps = 47/744 (6%) Strand=Plus/Plus Query 2641 GCGGGTGGTGGCGGACCAGTGGGCGACGATGCACAAGGTG--CCGATGGAGTGGGTAATG 2698 || || |||||| |||||||| | || |||| |||| |||| |||||||| || Sbjct 5586 GCAGGAGGTGGCTCACCAGTGGACAAC-ATGC----GGTGTTCCGACGGAGTGGGCTCTG 5640 Query 2699 CCTCAGGAAATTGGCATTACGATTCCGTTTGGATGGACGGCGCTGTCATCACCAAGTCCA 2758 ||| | |||||||| ||| || ||||||| | | |||||| || ||||||| Sbjct 5641 CCTGCAGTGATTGGCATGGAGATACCACATGGATGGGAGACCGTGTCATTACAAAGTCCA 5700 Query 2759 CCCGAACCTGGAGCCTGCCCGCCTACAACAACCACCTCTACCGCCAGATC--CAG-TCCA 2815 | || || ||| ||||||| |||||||||||||| ||||| | | |||| ||| |||| Sbjct 5701 CACGGACAGGGATCCTGCCCACCTACAACAACCACATCTACAGGCGGATCACCAGCTCCA 5760 Query 2816 GCGGCACCGGAGACGGCA---CGTACTTTGGTTACAGCACGCCTTGGGGATACTTCGATT 2872 ||||| | | ||| || | ||||||||||| || || || || || || | Sbjct 5761 CCGGCATCAGCAACGACAACACCTACTTTGGTTAG-GCGTGC--TG----TATTTTGACT 5813 Query 2873 TCAATCGATTCCACTGCCACTTTTCTCCCAGGGACTGGCAGCGGCTCATCAACAACCACT 2932 |||| || |||||||||||||||| ||| | |||||| |||| ||| |||| ||| || Sbjct 5814 TCAACCGCTTCCACTGCCACTTTTTACCCCGAGACTGGAAGCGTCTCGTCAATAACAGCT 5873 Query 2933 GGGGCATCCGCCCCAAGCGGCTCCACTTTAAGCTCTTCAACATCCAGGTCAAGGAGGTCA 2992 |||| ||||| || |||| ||| || ||| | |||| ||| || ||||||||||||| Sbjct 5874 GGGGTATCCGGCCTAAGCAACTCGGTTTCAAGTTATTCACCATACAAGTCAAGGAGGTCA 5933 Query 2993 CGACGACCGACGGCACCACGACCATCGCCAACAACCTCACCAGCACCATACAGGTCTTTG 3052 |||| | || |||| | |||||||||||| ||||||||||||||||| ||||| |||| Sbjct 5934 CGACAGTCAACAGCACAAAGACCATCGCCAATAACCTCACCAGCACCATCCAGGTGTTTG 5993 Query 3053 CGG--ACACGGAGTACCAGCTCCCGTACGTGCTCGGCAACGCCCACGAGGGCTGCCTGCC 3110 || ||||||| | |||||||| | || ||||| |||||||| || ||||| || Sbjct 5994 TGGACACACGGACTGTCAGCTCCCACCCTTGACTGGCAATGCCCACGAAGGGTGCCTACC 6053 Query 3111 GCCGTTCCCGGCGGACGTCTTCATGCTGCCGCAGTACGCGTACCTGACGCTCAACGCCAA 3170 || || || || ||||||| ||| |||| || ||| || ||||| |||| ||| Sbjct 6054 CCCTTTTCCCGCCAACGTCTTTATGGTGCCTCAATACAGATAACTGACTTTCAA---CAA 6110 Query 3171 CCCCACGAACCAGGGCGC--GGCCGCGCTCAGCCTGCCGCAGAGCGCCTTCTACTGCCTG 3228 | |||| | | || || ||| |||| ||| ||| || | | Sbjct 6111 C-----------GGGCACAATGTCGTGCCCAG---------GAGCACCTACTATTGTCGG 6150 Query 3229 GAGTACTTTCCGAGCCAGATGCTGAGGACCGGGAACAACTTCTCGTTCAGCTACGAGTTC 3288 ||| |||||| ||| | ||||| || || || |||||||| | ||| |||| || || Sbjct 6151 GAGCGCTTTCCCAGCAAAATGCTAAGAACAGGCAACAACTTTGCCTTCGGCTATGACTTT 6210 Query 3289 GAGAAGCTGCCCTTCCACTCGATGTTCATGCACAGCCAGAGCCTGGACCGGCTCATGAAC 3348 ||| || | || || || || |||| ||| |||||||| || |||||||| |||||| Sbjct 6211 GAGGAGGTACCTTTTCAGTCAATGTACATACACAGCCATGGCACTGACCGGCTGATGAAC 6270 Query 3349 CCGCTCATCGACCAGTACCTCTGG 3372 |||| | || ||||| | ||| Sbjct 6271 TCGCTGTTGAACTAGTACTTGTGG 6294 Score = 311 bits (344), Expect = 2e-81 Identities = 333/443 (75%), Gaps = 2/443 (0%) Strand=Plus/Plus Query 1088 ATGAACGGCTACGACCCCGCCTACGCGGGCAGCGTGCTGCTCGGCTGGTGCCGCACCGGC 1147 ||||| ||||| ||| | |||| ||| || | | |||||| | ||||||| | | Sbjct 3887 ATGAATGGCTATGACGCGGCCTGCGCCAGCTCCATTCTGCTCCGGTGGTGCCAAAAAAG- 3945 Query 1148 TTCGGCAAGCGCAACACCGTCTGGCTCTTCGGGCCGGCCACGACCGGCAAGACGAACCTC 1207 ||||||||| | ||| || |||||||||| || || | || ||||||||||| ||| | Sbjct 3946 TTCGGCAAGAGGAACGCCATCTGGCTCTTTGGACCTGTGACCACCGGCAAGACCAACATT 4005 Query 1208 GCCGAGGCCATCAGCCACTCGGTGCCCTTCTACGGCTGCGTCAACTGGACCAACGAGAAC 1267 || ||||| || ||| | ||||||||||| |||||||||| ||||||||| ||||| Sbjct 4006 GCGGAGGCTATTGCCCATGCCGTGCCCTTCTATGGCTGCGTCAGCTGGACCAATGAGAAT 4065 Query 1268 TTCCCCTTCAACGACTGCGTGGACAAGATGATCATCTGGTGGGAGGAGGGCAAGATGACG 1327 || ||||| ||||||||| ||||||||||| | ||| ||||||||||| ||||||||||| Sbjct 4066 TTTCCCTT-AACGACTGCATGGACAAGATGGTGATCCGGTGGGAGGAGTGCAAGATGACG 4124 Query 1328 TCCAAGGTCGTCGAGAGCGCCAAGGCCATCCTCGGCGGCAGCAAGGTGCGCGTCGACCAG 1387 |||||||||| ||| ||||||||||||| || ||| | ||||| ||| ||||| Sbjct 4125 GCCAAGGTCGTGGAGTCAGCCAAGGCCATCCGAGGGGGCTCTACGGTGCAAGTCAACCAG 4184 Query 1388 AAGTGCAAGAACTCGCAGCAGATCGAGCCCACGCCCGTCATNNNNNNNNNNNNNNNNNAC 1447 || |||||| || ||||||||| || ||||| | ||||| || Sbjct 4185 AAATGCAAGTCCTGGCAGCAGATTGACCCCACTCTGGTCATCATCACCTCCTACATCAAC 4244 Query 1448 ATGTGCGAGGTCGTCGACGGGAACTCGACCACGTTCGAGCACCGGCAGCCGCTCGAGGAC 1507 |||||| |||| ||||||||||||| | || || || |||| ||||||||| |||| Sbjct 4245 GTGTGCGTGGTCATCGACGGGAACTCCATGACTTTTGAACACCAGCAGCCGCTGCAGGAT 4304 Query 1508 AGGATGTTCAAGTTCGAGCTCAC 1530 |||||||||| || || || || Sbjct 4305 TGGATGTTCAAATTTGAACTAAC 4327 Score = 174 bits (192), Expect = 4e-40 Identities = 224/309 (72%), Gaps = 0/309 (0%) Strand=Plus/Plus Query 3829 CCGGGCATGGTCTGGCAGGACCGCGACATCTACCTGCAGGGCCCGATATGGGCCAAGATC 3888 || |||||| |||||| |||| ||||||||||| ||| ||| ||| ||||||||| | Sbjct 6749 CCTGGCATGAATTGGCAGAACCGAGACATCTACCTCCAGAGCCTGATCTGGGCCAAGGTT 6808 Query 3889 CCGGAGACGGACGGCCACTTCCACCCGTCCCCGCTCATGGGCGGCTTCGGGCTCAAGAAC 3948 || | || ||||| ||||| || | ||| || |||||||| || ||||| |||||||| Sbjct 6809 CCACACACTGACGGGCACTTTCATCTGTCTCCTCTCATGGGGGGATTCGGTCTCAAGAAG 6868 Query 3949 CCGCCGCCGCAGATCCTCGTCAAGAACACGCCCGTGCCCGCCGTGCCGCCCACGACCTTC 4008 | || | |||||||| ||||||||||| || || || |||| || || | || Sbjct 6869 GCCCCTCTTCAGATCCTGGTCAAGAACACCCCGGTTCCTGCCGATCCTCCAGTGGAATTT 6928 Query 4009 ACACCGCAGAAGGTCAACTCCTTCATCACGCAGTACTCCACCGGCCAGGTCACCGTCGAG 4068 ||| ||| ||||| ||||||||| ||||| |||| | || | ||||| || Sbjct 6929 ACAAGCGTCAAGCTCAACAGCTTCATCACTCAGTATAGCACCAGACAAGAAACCGTGGAA 6988 Query 4069 ATCGAGTGGGAGCTGCGCAAGGAGAAGAGCAAGCGCTGGAACCCCGAGATCCAGTACACC 4128 || | | |||||||| |||| | |||| | |||||||| || || || ||||| Sbjct 6989 ATTAAATAGGAGCTGCAGCTGGAGGACTCCAAGAGGTGGAACCCAGAAATTCAATACACT 7048 Query 4129 TCCAACTTC 4137 ||||||||| Sbjct 7049 TCCAACTTC 7057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 13593761228385