Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04]
63,439 sequences; 2,073,344,508 total letters
Query= NC_027429.1
Length=4590
Score E
Sequences producing significant alignments: (Bits) Value
seq875 192 2e-45
seq615 136 1e-28
>seq875
Length=186252
Score = 192 bits (212), Expect = 2e-45
Identities = 338/485 (70%), Gaps = 13/485 (3%)
Strand=Plus/Minus
Query 2712 CGAGGGAGTGGGTAATGCCTCGGGAGATTGGCATTGCGATACCCAATGGCTGGGCGACCA 2771
||| | |||||| | |||||||| |||||| |||| || || ||||| ||||| ||||
Sbjct 116358 CGATGCAGTGGGGAGCTCCTCGGGAAATTGGCGTTGCAATTCCAAATGGATGGGCAACCA 116299
Query 2772 CGTCATTACAAAATCTACCAGAACTTGGGTTCTGCCCTCTTACGGGAATCATCTCTACTC 2831
||| | || | || || | || ||||| |||||| || || | || | |||
Sbjct 116298 CGTGCTCACCGAGTCCGCCGGGACCTGGGTCCTGCCCACT-ACAACCACCACCAGTACAA 116240
Query 2832 GCCCATCAACTTTGATGGAACCACAGGGAACGGAACCCAAGCCGCTTACTGCGGATACGC 2891
|| |||| ||| | ||| |||| | || ||| ||| || || | | ||| |
Sbjct 116239 GCGCATCGACTCAAAGGGAGCCACCAGCAA-GGA---CAA-----TTTCTACAGCTACTC 116189
Query 2892 TACCCCCTGGGCCTACTTTGACTTTAACCGATTCCACTGCCACTTTTCCCCCCGAGACTG 2951
||| || |||| ||||||||||||||| | ||||| | | ||||||| |||||||||||
Sbjct 116188 TACTCCGTGGGGATACTTTGACTTTAAC-GCTTCCAGTACTACTTTTCACCCCGAGACTG 116130
Query 2952 GCAAAGACTCATTAACAACCATACCGGAATACGACCAGTCGGACTCAAATTCAAGCTGTT 3011
||| | || | || || || || | | | |||| |||||||||||
Sbjct 116129 GCAGTGCTTCGTCAAATACAATTGGGGTCTCTGGTCCAAGAGACTTTCCTTCAAGCTGTT 116070
Query 3012 CAACATCCAGGTCAAGGAAATCACAGTACAAGATTCGACCAAAACGATCGCCAACAATCT 3071
||| ||||||| ||||| |||| || || ||| || ||| |||| || ||
Sbjct 116069 TAACGTCCAGGTTAAGGAGGTCACTACGCAGGAGGGAGCCACGACCATCACCAATAACCT 116010
Query 3072 CACCAGCACCGTACAGGTCTTTGCGGACACGGAGCACCAGCTCCCGTACGTATTAGGAAA 3131
|||||||||| | ||||||||||||||| |||| ||||| ||| | |||| |||| ||
Sbjct 116009 CACCAGCACCATCCAGGTCTTTGCGGACTCGGACTACCAGGTCCTGCACGTGCTAGGCAA 115950
Query 3132 TGC-CACGCAGGGCACGTTTCCTCCCTTTCCGGCTGAAGTCTTTCAGTTGCCTCAGTACG 3190
|| |||| |||| ||| | |||||||| ||||| | ||||| | | || |||||||
Sbjct 115949 CGCGCACG-AGGGAACGCTGCCTCCCTTCCCGGCCCATGTCTTCACGGTCCCCCAGTACG 115891
Query 3191 GCTAC 3195
||||
Sbjct 115890 CCTAC 115886
Score = 93.3 bits (102), Expect = 1e-15
Identities = 123/166 (74%), Gaps = 5/166 (3%)
Strand=Plus/Minus
Query 2212 CGCGGTCTAGTGGTTCCAGGTTATAAATACCTCGGTCCATTCAACGGATTAGACAAGGGC 2271
|| ||||| || |||| || |||||||| ||||| || ||||| || | || |||||
Sbjct 116877 CGGGGTCTGGTCCTTCCGGGATATAAATATCTCGGACCGTTCAATGGTCTGGATAAGGGA 116818
Query 2272 GAGCCTGTCAA-CGCAGCTGACGCGGCTGCCCTTGAACACGACAAAGCTTATAACGAGCT 2330
|| | |||| ||| || ||||| | || || || |||| | ||| | | |||||
Sbjct 116817 GACCGGGTCAGTCGC-GCAGACGCCGTCGCTCTAGAGCACGTCG--GCT-ACAGCGAGCA 116762
Query 2331 TCTCGAGGCTGGAGACAACCCGTACATCAAGTACAACCACGCGGAC 2376
|||||||| ||||||||||| ||| |||||| |||||| || |||
Sbjct 116761 GCTCGAGGCGGGAGACAACCCCTACCTCAAGTGCAACCATGCCGAC 116716
>seq615
Length=480679
Score = 136 bits (150), Expect = 1e-28
Identities = 394/594 (66%), Gaps = 32/594 (5%)
Strand=Plus/Plus
Query 2711 CCGAGGGAGTGGGTAATGCCTCGGGAGATTGGCATTGCGATACCCAATGGCTGGGCGACC 2770
|||| |||||||| ||||| | ||||||||| | |||||| |||| |||| ||||
Sbjct 5623 CCGACGGAGTGGGCTCTGCCTGCAGTGATTGGCATGGAGATACCACATGGATGGGAGACC 5682
Query 2771 ACGTCATTACAAAATCTACCAGAACTTGGGTTCTGCCCTCTTACGGGAATCATCTCTACT 2830
||||||||||| || || | || || | |||||| | ||| || || |||||
Sbjct 5683 GTGTCATTACAAAGTCCACACGGACAGGGATCCTGCCCACCTACAACAACCACATCTACA 5742
Query 2831 CGCCCATCAACTTTGATGGAACCACAGGGAACGGAACCCAAGCCGCTTACTGCGGATACG 2890
|| |||| | | |||| || | | | | | | | | |||| || || |
Sbjct 5743 GGCGGATCACCA------GCTCCACCGGCATCAGCAACGACAACACCTACTTTGGTTAGG 5796
Query 2891 CTACCCCCTGGGCCTACTTTGACTTTAACCGATTCCACTGCCACTTTTCCCCCCGAGACT 2950
| | || || |||||||| ||||| |||||||||||||||| ||||||||||
Sbjct 5797 CGTGC---TG----TATTTTGACTTCAACCGCTTCCACTGCCACTTTTTACCCCGAGACT 5849
Query 2951 GGCAAAGACTCATTAACAACCATACCGGAATACGACCAGTCGGACTCAAATTCAAGCTGT 3010
|| | | ||| | || ||| || || || || |||| |||||| | |
Sbjct 5850 GGAAGCGTCTCGTCAATAACAGCTGGGGTATCCGGCCTAAGCAACTCGGTTTCAAGTTAT 5909
Query 3011 TCAACATCCAGGTCAAGGAAATC---ACAGTACAAGATTCGACCAAAACGATCGCCAACA 3067
||| ||| || |||||||| || ||||| ||| | || || || |||||||| |
Sbjct 5910 TCACCATACAAGTCAAGGAGGTCACGACAGT-CAACA--GCACAAAGACCATCGCCAATA 5966
Query 3068 ATCTCACCAGCACCGTACAGGTCTTTGCGG--ACACGGAGCACCAGCTCCCGTACGTATT 3125
| |||||||||||| | ||||| |||| || ||||||| |||||||| | |
Sbjct 5967 ACCTCACCAGCACCATCCAGGTGTTTGTGGACACACGGACTGTCAGCTCCCACCCTTGAC 6026
Query 3126 AGGAAATG-CCACGCAGGGCACGTTTCCTCCCTTTCCGGCTGAAGTCTTTCAGTTGCCTC 3184
|| |||| ||||| |||| | | || || ||||| || | |||||| | ||||||
Sbjct 6027 TGGCAATGCCCACGAAGGGTGC-CTACCCCCTTTTCCCGCCAACGTCTTTATGGTGCCTC 6085
Query 3185 AGTACGGCT-ACTGTACCATC--CAAGGCCCTCAGGGTAAGTTTACCGACAGAAGTGCCT 3241
| ||| | | |||| || || ||| | | || || | || ||| || |||
Sbjct 6086 AATACAGATAACTG-ACTTTCAACAACGGGCACAATGT---CGTGCC--CAGGAGCACCT 6139
Query 3242 TCTACTGCTTGGAGTACTTTCCTTCCAAGATGCTGAGAACGGGGAATAACTTTG 3295
||| || |||| |||||| ||| ||||| ||||| || || |||||||
Sbjct 6140 ACTATTGTCGGGAGCGCTTTCCCAGCAAAATGCTAAGAACAGGCAACAACTTTG 6193
Score = 104 bits (114), Expect = 7e-19
Identities = 199/291 (68%), Gaps = 2/291 (1%)
Strand=Plus/Plus
Query 3880 AACAGAGATATTTACCTGCAAGGTCCCATCTGGGCTAAAATACCCGATACCGATGGACAC 3939
||| |||| || ||||| || | | |||||||| || | || | || || || |||
Sbjct 6767 AACCGAGACATCTACCTCCAGAGCCTGATCTGGGCCAAGGTTCCACACACTGACGGGCAC 6826
Query 3940 TTTCACCCGTCTCCACAAATGGGTGGTTTCGGACTTAAAAACCCACCACCGATGATCCTC 3999
||||| | |||||| | ||||| || ||||| || || || | || | ||||||
Sbjct 6827 TTTCATCTGTCTCCTCTCATGGGGGGATTCGGTCTCAAGAAGGCCCCTCTTCAGATCCTG 6886
Query 4000 ATCAAAAACACACCCGTTCCCGCCGATCCACCAACGACCTTCA-AACCGACTCCGATGAA 4058
|||| ||||| || ||||| |||||||| ||| | || | || || | | | ||
Sbjct 6887 GTCAAGAACACCCCGGTTCCTGCCGATCCTCCAGTGGAATTTACAAGCGTCAA-GCTCAA 6945
Query 4059 CAGCTTCATCAGCGAATACAGTACCGGTCAGGTGACTGTAGAGATGCTGTGGGAGGTCCG 4118
||||||||||| | || || ||| | || | || || || || | |||| | |
Sbjct 6946 CAGCTTCATCACTCAGTATAGCACCAGACAAGAAACCGTGGAAATTAAATAGGAGCTGCA 7005
Query 4119 GAAAGAAGACTCCAAGAGATGGAACCCGGAAATCCAGTTTACCTCCAATTT 4169
| || ||||||||||| |||||||| ||||| || | || ||||| ||
Sbjct 7006 GCTGGAGGACTCCAAGAGGTGGAACCCAGAAATTCAATACACTTCCAACTT 7056
Score = 78.8 bits (86), Expect = 3e-11
Identities = 95/127 (75%), Gaps = 2/127 (2%)
Strand=Plus/Plus
Query 1336 CGGAAAAAGGAATACCATCTGGCTCTACGGACCAGCTACCACCGGAAAGACTATTATAGC 1395
||| || ||||| |||||||||||| ||||| | |||||||| ||||| | || ||
Sbjct 3948 CGGCAAGAGGAACGCCATCTGGCTCTTTGGACCTGTGACCACCGGCAAGACCAACATTGC 4007
Query 1396 GCAAGCTATAGCCCACGGTGCTGTCC-TCTTTGGAGGAGTCAATTGGACTAATGAAAACT 1454
| | ||||| ||||| | | || || ||| ||| | |||| ||||| ||||| || |
Sbjct 4008 GGAGGCTATTGCCCATGCCG-TGCCCTTCTATGGCTGCGTCAGCTGGACCAATGAGAATT 4066
Query 1455 TTCCCTT 1461
|||||||
Sbjct 4067 TTCCCTT 4073
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 14565886237425
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |