Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= NC_027429.1 Length=4590 Score E Sequences producing significant alignments: (Bits) Value seq875 192 2e-45 seq615 136 1e-28 >seq875 Length=186252 Score = 192 bits (212), Expect = 2e-45 Identities = 338/485 (70%), Gaps = 13/485 (3%) Strand=Plus/Minus Query 2712 CGAGGGAGTGGGTAATGCCTCGGGAGATTGGCATTGCGATACCCAATGGCTGGGCGACCA 2771 ||| | |||||| | |||||||| |||||| |||| || || ||||| ||||| |||| Sbjct 116358 CGATGCAGTGGGGAGCTCCTCGGGAAATTGGCGTTGCAATTCCAAATGGATGGGCAACCA 116299 Query 2772 CGTCATTACAAAATCTACCAGAACTTGGGTTCTGCCCTCTTACGGGAATCATCTCTACTC 2831 ||| | || | || || | || ||||| |||||| || || | || | ||| Sbjct 116298 CGTGCTCACCGAGTCCGCCGGGACCTGGGTCCTGCCCACT-ACAACCACCACCAGTACAA 116240 Query 2832 GCCCATCAACTTTGATGGAACCACAGGGAACGGAACCCAAGCCGCTTACTGCGGATACGC 2891 || |||| ||| | ||| |||| | || ||| ||| || || | | ||| | Sbjct 116239 GCGCATCGACTCAAAGGGAGCCACCAGCAA-GGA---CAA-----TTTCTACAGCTACTC 116189 Query 2892 TACCCCCTGGGCCTACTTTGACTTTAACCGATTCCACTGCCACTTTTCCCCCCGAGACTG 2951 ||| || |||| ||||||||||||||| | ||||| | | ||||||| ||||||||||| Sbjct 116188 TACTCCGTGGGGATACTTTGACTTTAAC-GCTTCCAGTACTACTTTTCACCCCGAGACTG 116130 Query 2952 GCAAAGACTCATTAACAACCATACCGGAATACGACCAGTCGGACTCAAATTCAAGCTGTT 3011 ||| | || | || || || || | | | |||| ||||||||||| Sbjct 116129 GCAGTGCTTCGTCAAATACAATTGGGGTCTCTGGTCCAAGAGACTTTCCTTCAAGCTGTT 116070 Query 3012 CAACATCCAGGTCAAGGAAATCACAGTACAAGATTCGACCAAAACGATCGCCAACAATCT 3071 ||| ||||||| ||||| |||| || || ||| || ||| |||| || || Sbjct 116069 TAACGTCCAGGTTAAGGAGGTCACTACGCAGGAGGGAGCCACGACCATCACCAATAACCT 116010 Query 3072 CACCAGCACCGTACAGGTCTTTGCGGACACGGAGCACCAGCTCCCGTACGTATTAGGAAA 3131 |||||||||| | ||||||||||||||| |||| ||||| ||| | |||| |||| || Sbjct 116009 CACCAGCACCATCCAGGTCTTTGCGGACTCGGACTACCAGGTCCTGCACGTGCTAGGCAA 115950 Query 3132 TGC-CACGCAGGGCACGTTTCCTCCCTTTCCGGCTGAAGTCTTTCAGTTGCCTCAGTACG 3190 || |||| |||| ||| | |||||||| ||||| | ||||| | | || ||||||| Sbjct 115949 CGCGCACG-AGGGAACGCTGCCTCCCTTCCCGGCCCATGTCTTCACGGTCCCCCAGTACG 115891 Query 3191 GCTAC 3195 |||| Sbjct 115890 CCTAC 115886 Score = 93.3 bits (102), Expect = 1e-15 Identities = 123/166 (74%), Gaps = 5/166 (3%) Strand=Plus/Minus Query 2212 CGCGGTCTAGTGGTTCCAGGTTATAAATACCTCGGTCCATTCAACGGATTAGACAAGGGC 2271 || ||||| || |||| || |||||||| ||||| || ||||| || | || ||||| Sbjct 116877 CGGGGTCTGGTCCTTCCGGGATATAAATATCTCGGACCGTTCAATGGTCTGGATAAGGGA 116818 Query 2272 GAGCCTGTCAA-CGCAGCTGACGCGGCTGCCCTTGAACACGACAAAGCTTATAACGAGCT 2330 || | |||| ||| || ||||| | || || || |||| | ||| | | ||||| Sbjct 116817 GACCGGGTCAGTCGC-GCAGACGCCGTCGCTCTAGAGCACGTCG--GCT-ACAGCGAGCA 116762 Query 2331 TCTCGAGGCTGGAGACAACCCGTACATCAAGTACAACCACGCGGAC 2376 |||||||| ||||||||||| ||| |||||| |||||| || ||| Sbjct 116761 GCTCGAGGCGGGAGACAACCCCTACCTCAAGTGCAACCATGCCGAC 116716 >seq615 Length=480679 Score = 136 bits (150), Expect = 1e-28 Identities = 394/594 (66%), Gaps = 32/594 (5%) Strand=Plus/Plus Query 2711 CCGAGGGAGTGGGTAATGCCTCGGGAGATTGGCATTGCGATACCCAATGGCTGGGCGACC 2770 |||| |||||||| ||||| | ||||||||| | |||||| |||| |||| |||| Sbjct 5623 CCGACGGAGTGGGCTCTGCCTGCAGTGATTGGCATGGAGATACCACATGGATGGGAGACC 5682 Query 2771 ACGTCATTACAAAATCTACCAGAACTTGGGTTCTGCCCTCTTACGGGAATCATCTCTACT 2830 ||||||||||| || || | || || | |||||| | ||| || || ||||| Sbjct 5683 GTGTCATTACAAAGTCCACACGGACAGGGATCCTGCCCACCTACAACAACCACATCTACA 5742 Query 2831 CGCCCATCAACTTTGATGGAACCACAGGGAACGGAACCCAAGCCGCTTACTGCGGATACG 2890 || |||| | | |||| || | | | | | | | | |||| || || | Sbjct 5743 GGCGGATCACCA------GCTCCACCGGCATCAGCAACGACAACACCTACTTTGGTTAGG 5796 Query 2891 CTACCCCCTGGGCCTACTTTGACTTTAACCGATTCCACTGCCACTTTTCCCCCCGAGACT 2950 | | || || |||||||| ||||| |||||||||||||||| |||||||||| Sbjct 5797 CGTGC---TG----TATTTTGACTTCAACCGCTTCCACTGCCACTTTTTACCCCGAGACT 5849 Query 2951 GGCAAAGACTCATTAACAACCATACCGGAATACGACCAGTCGGACTCAAATTCAAGCTGT 3010 || | | ||| | || ||| || || || || |||| |||||| | | Sbjct 5850 GGAAGCGTCTCGTCAATAACAGCTGGGGTATCCGGCCTAAGCAACTCGGTTTCAAGTTAT 5909 Query 3011 TCAACATCCAGGTCAAGGAAATC---ACAGTACAAGATTCGACCAAAACGATCGCCAACA 3067 ||| ||| || |||||||| || ||||| ||| | || || || |||||||| | Sbjct 5910 TCACCATACAAGTCAAGGAGGTCACGACAGT-CAACA--GCACAAAGACCATCGCCAATA 5966 Query 3068 ATCTCACCAGCACCGTACAGGTCTTTGCGG--ACACGGAGCACCAGCTCCCGTACGTATT 3125 | |||||||||||| | ||||| |||| || ||||||| |||||||| | | Sbjct 5967 ACCTCACCAGCACCATCCAGGTGTTTGTGGACACACGGACTGTCAGCTCCCACCCTTGAC 6026 Query 3126 AGGAAATG-CCACGCAGGGCACGTTTCCTCCCTTTCCGGCTGAAGTCTTTCAGTTGCCTC 3184 || |||| ||||| |||| | | || || ||||| || | |||||| | |||||| Sbjct 6027 TGGCAATGCCCACGAAGGGTGC-CTACCCCCTTTTCCCGCCAACGTCTTTATGGTGCCTC 6085 Query 3185 AGTACGGCT-ACTGTACCATC--CAAGGCCCTCAGGGTAAGTTTACCGACAGAAGTGCCT 3241 | ||| | | |||| || || ||| | | || || | || ||| || ||| Sbjct 6086 AATACAGATAACTG-ACTTTCAACAACGGGCACAATGT---CGTGCC--CAGGAGCACCT 6139 Query 3242 TCTACTGCTTGGAGTACTTTCCTTCCAAGATGCTGAGAACGGGGAATAACTTTG 3295 ||| || |||| |||||| ||| ||||| ||||| || || ||||||| Sbjct 6140 ACTATTGTCGGGAGCGCTTTCCCAGCAAAATGCTAAGAACAGGCAACAACTTTG 6193 Score = 104 bits (114), Expect = 7e-19 Identities = 199/291 (68%), Gaps = 2/291 (1%) Strand=Plus/Plus Query 3880 AACAGAGATATTTACCTGCAAGGTCCCATCTGGGCTAAAATACCCGATACCGATGGACAC 3939 ||| |||| || ||||| || | | |||||||| || | || | || || || ||| Sbjct 6767 AACCGAGACATCTACCTCCAGAGCCTGATCTGGGCCAAGGTTCCACACACTGACGGGCAC 6826 Query 3940 TTTCACCCGTCTCCACAAATGGGTGGTTTCGGACTTAAAAACCCACCACCGATGATCCTC 3999 ||||| | |||||| | ||||| || ||||| || || || | || | |||||| Sbjct 6827 TTTCATCTGTCTCCTCTCATGGGGGGATTCGGTCTCAAGAAGGCCCCTCTTCAGATCCTG 6886 Query 4000 ATCAAAAACACACCCGTTCCCGCCGATCCACCAACGACCTTCA-AACCGACTCCGATGAA 4058 |||| ||||| || ||||| |||||||| ||| | || | || || | | | || Sbjct 6887 GTCAAGAACACCCCGGTTCCTGCCGATCCTCCAGTGGAATTTACAAGCGTCAA-GCTCAA 6945 Query 4059 CAGCTTCATCAGCGAATACAGTACCGGTCAGGTGACTGTAGAGATGCTGTGGGAGGTCCG 4118 ||||||||||| | || || ||| | || | || || || || | |||| | | Sbjct 6946 CAGCTTCATCACTCAGTATAGCACCAGACAAGAAACCGTGGAAATTAAATAGGAGCTGCA 7005 Query 4119 GAAAGAAGACTCCAAGAGATGGAACCCGGAAATCCAGTTTACCTCCAATTT 4169 | || ||||||||||| |||||||| ||||| || | || ||||| || Sbjct 7006 GCTGGAGGACTCCAAGAGGTGGAACCCAGAAATTCAATACACTTCCAACTT 7056 Score = 78.8 bits (86), Expect = 3e-11 Identities = 95/127 (75%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 1336 CGGAAAAAGGAATACCATCTGGCTCTACGGACCAGCTACCACCGGAAAGACTATTATAGC 1395 ||| || ||||| |||||||||||| ||||| | |||||||| ||||| | || || Sbjct 3948 CGGCAAGAGGAACGCCATCTGGCTCTTTGGACCTGTGACCACCGGCAAGACCAACATTGC 4007 Query 1396 GCAAGCTATAGCCCACGGTGCTGTCC-TCTTTGGAGGAGTCAATTGGACTAATGAAAACT 1454 | | ||||| ||||| | | || || ||| ||| | |||| ||||| ||||| || | Sbjct 4008 GGAGGCTATTGCCCATGCCG-TGCCCTTCTATGGCTGCGTCAGCTGGACCAATGAGAATT 4066 Query 1455 TTCCCTT 1461 ||||||| Sbjct 4067 TTCCCTT 4073 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14565886237425