Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rousettus_20aegyptiacus_20[refseq_20GCF_5F001466805.2_202016-03-17] 2,490 sequences; 1,910,250,568 total letters Query= NC_006147.2 Length=5132 Score E Sequences producing significant alignments: (Bits) Value seq1113 96.9 1e-16 >seq1113 Length=5854140 Score = 96.9 bits (106), Expect = 1e-16 Identities = 209/307 (68%), Gaps = 8/307 (3%) Strand=Plus/Minus Query 1235 GTTGATTGGCTCATTGAGATGGGTATCACCTCTGAAAAACAGTGGCTAACTGAAAATAAA 1294 ||||| ||||| || || | | || ||| ||||| ||||||||||| || ||||| Sbjct 5809681 GTTGACTGGCTTATGGAAAATGACATAACCGGTGAAAGACAGTGGCTAATGGAGGATAAA 5809622 Query 1295 GAGAGCTACCGGAGCTTTCAGGCTACATCTTCAAACAACAGA-CAAGTAAAAGCAGCACT 1353 ||| ||| | ||||| ||||| ||||| | || | | ||| | |||||||| | Sbjct 5809621 GAGTCTTACAGACATTTTCAAGCTACTTCTTCTA-CATCTCATCAAATCAAAGCAGCTAT 5809563 Query 1354 TGAAAATGCCCGAGCAGAAATGCTACTAACAAAAACTGCCACAGACTATTTGATTGGAAA 1413 |||||||||||||| |||||| | ||||| || |||||| |||| | | || || | Sbjct 5809562 AGAAAATGCCCGAGCTGAAATGGTTCTAACCAAGTCTGCCAAGGACTCTCTCATGGGCAT 5809503 Query 1414 AGACCCAGTTCTGGACATTACTAAAAATCGGATCTATCAA-ATTCTGAAGTTGAATAACT 1472 | || ||| ||||| || | ||| | | |||| || | ||||| ||||| | Sbjct 5809502 ACTTCCTGTTGGTGACATAACAATAAA----GTTTTTCAACTTTTTCAAGTT-AATAAAT 5809448 Query 1473 ATAACCCTCAATATGTAGGGAGCGTCCTATGCGGATGGGTGAAAAGAGAATTCAACAAAA 1532 |||||| || ||| || | | | ||| |||| | | | || || |||||| Sbjct 5809447 ATAACCTTCTTCATGCAGCAAACATACTAGTGAAATGGTTCCATTGGGAGTTTGACAAAA 5809388 Query 1533 GAAATGC 1539 ||||||| Sbjct 5809387 GAAATGC 5809381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16309955796450