Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rousettus_20aegyptiacus_20[refseq_20GCF_5F001466805.2_202016-03-17]
2,490 sequences; 1,910,250,568 total letters
Query= NC_006147.2
Length=5132
Score E
Sequences producing significant alignments: (Bits) Value
seq1113 96.9 1e-16
>seq1113
Length=5854140
Score = 96.9 bits (106), Expect = 1e-16
Identities = 209/307 (68%), Gaps = 8/307 (3%)
Strand=Plus/Minus
Query 1235 GTTGATTGGCTCATTGAGATGGGTATCACCTCTGAAAAACAGTGGCTAACTGAAAATAAA 1294
||||| ||||| || || | | || ||| ||||| ||||||||||| || |||||
Sbjct 5809681 GTTGACTGGCTTATGGAAAATGACATAACCGGTGAAAGACAGTGGCTAATGGAGGATAAA 5809622
Query 1295 GAGAGCTACCGGAGCTTTCAGGCTACATCTTCAAACAACAGA-CAAGTAAAAGCAGCACT 1353
||| ||| | ||||| ||||| ||||| | || | | ||| | |||||||| |
Sbjct 5809621 GAGTCTTACAGACATTTTCAAGCTACTTCTTCTA-CATCTCATCAAATCAAAGCAGCTAT 5809563
Query 1354 TGAAAATGCCCGAGCAGAAATGCTACTAACAAAAACTGCCACAGACTATTTGATTGGAAA 1413
|||||||||||||| |||||| | ||||| || |||||| |||| | | || || |
Sbjct 5809562 AGAAAATGCCCGAGCTGAAATGGTTCTAACCAAGTCTGCCAAGGACTCTCTCATGGGCAT 5809503
Query 1414 AGACCCAGTTCTGGACATTACTAAAAATCGGATCTATCAA-ATTCTGAAGTTGAATAACT 1472
| || ||| ||||| || | ||| | | |||| || | ||||| ||||| |
Sbjct 5809502 ACTTCCTGTTGGTGACATAACAATAAA----GTTTTTCAACTTTTTCAAGTT-AATAAAT 5809448
Query 1473 ATAACCCTCAATATGTAGGGAGCGTCCTATGCGGATGGGTGAAAAGAGAATTCAACAAAA 1532
|||||| || ||| || | | | ||| |||| | | | || || ||||||
Sbjct 5809447 ATAACCTTCTTCATGCAGCAAACATACTAGTGAAATGGTTCCATTGGGAGTTTGACAAAA 5809388
Query 1533 GAAATGC 1539
|||||||
Sbjct 5809387 GAAATGC 5809381
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 16309955796450
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |