Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tursiops_20truncatus_20[genbank_20GCA_5F000151865.3_202012-01-02] 240,557 sequences; 2,551,401,796 total letters Query= NC_003287.2 Length=6407 Score E Sequences producing significant alignments: (Bits) Value seq219640 246 1e-61 seq224909 109 2e-20 seq43270 98.7 4e-17 seq234044 78.8 4e-11 >seq219640 Length=810 Score = 246 bits (272), Expect = 1e-61 Identities = 229/284 (81%), Gaps = 5/284 (2%) Strand=Plus/Plus Query 5574 GCTCCTTTCGCTTTCTTCCCTTCCTTTCTCGCCACGTTCGCCGGCTTTCCCCGTCAAGCT 5633 ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 360 GCTGCTTTCACTTTCTTCCCTTCCTTTCTCGCCACGTTCGCCGGCTTTCCCCGTCAAGCT 419 Query 5634 CTAAATCGGGGGCTCCCTTTAGGGTTCCGATTTAGTGCTTTACGGCACCTCGACCCCAAA 5693 ||||||| ||| || |||| || || ||| ||||||| |||||||||| |||||| Sbjct 420 CTAAATCCGGGACTAAATTTATGGCTCAAATTAAGTGCTTAACGGCACCTCAACCCCATG 479 Query 5694 AAACTTGATTTGGGTGATGGTTCACGTAGTGGGCCATCGCCCTGATAGACGGTTTTTCGC 5753 |||| |||| |||||||||||||| |||||| |||||| || | | |||||||||||| Sbjct 480 AAACAAGATTAGGGTGATGGTTCACCTAGTGGACCATCGACCAGGAAAACGGTTTTTCGC 539 Query 5754 CCTTTGACGTTGGAGTCCACGTTCTTTAATAGTGGACTCTTGTTCCAAACTGGAACAACA 5813 ||||||| |||||| | | || ||| | |||| ||| | | ||||||||| ||| Sbjct 540 CCTTTGAAGTTGGAAT-GGTGATC-ATAACAATGGAATCTAG-TAAAAACTGGAAGAAC- 595 Query 5814 CTCAACCCTATCTCGGGCTATTCTTTTGATTTATAAGGGATTTT 5857 |||| ||| || |||| |||||| | ||| || ||||| ||| Sbjct 596 CTCATCCCCATATCGGTCTATTC-TAAGATATAGGAGGGAATTT 638 >seq224909 Length=887 Score = 109 bits (120), Expect = 2e-20 Identities = 167/233 (72%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 5514 GCGGCGGGTGTGGTGGTTACGCGCAGCGTGACCGCTACACTTGCCAGCGCCCTAGCGCCC 5573 |||| || |||| ||||||||| || || || |||| |||| |||| ||| || | || Sbjct 283 GCGGTGGTTGTGATGGTTACGCTCATCGCGAATGCTATACTTACCAGAGCCTTACGGTCC 342 Query 5574 GCTCCTTTCGCTTTCTTCCCTTCCTTTCTCGCCACGTTCGCCGGCTTTCCCCGTCAAGCT 5633 | | ||| || |||| | ||||||| |||||| || | || ||||||| ||| || Sbjct 343 ACGCAGTTCATTTCCTTCTGT-CCTTTCTAGCCACGGTCCCTGGTGTTCCCCGGCAAACT 401 Query 5634 CTAAATCGGGGGCTCCCTTTAGGGTTCCGATTTAGTGCTTTACGGCACCTCGACCCCAAA 5693 |||| | | ||| |||||||| ||| |||| |||| ||||| | ||| | | ||| Sbjct 402 CTAATTGGAGGG-TCCCTTTAAGGTAGAGATTGGGTGCATTACGAC-CCTACATCGCAAT 459 Query 5694 AAACTTGATTTGGGTGATGGTTCACGTAGTGGGCCATCGCCCTGATAGACGGT 5746 || |||| || ||| |||| |||| | ||| ||||||||||||| || Sbjct 460 AATTTTGAAGAAGGCGATAATTCAA-TAGTCGCCCAGCGCCCTGATAGACAGT 511 >seq43270 Length=6877 Score = 98.7 bits (108), Expect = 4e-17 Identities = 101/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 5490 GCGCCCTGTAGCGGCGCATTAAGCGCGGCGGGTGTGGTGGTTACGCGCAGCGTGACCGCT 5549 || ||||||||| |||| ||| || | |||||||||||| |||||| |||||| | Sbjct 6607 GCTCCCTGTAGCTGCGCCTTATCCGTGTATCGTGTGGTGGTTAAGCGCAGAGTGACCCTT 6548 Query 5550 ACACTTGCCAGCGCCCTAGCGCCCGCTCCTTTCGCTTTCTTCCCTTCCTTTCTCGCCACG 5609 ||| |||| |||||||| | |||||| |||| ||||| ||| || ||| |||| | Sbjct 6547 GCACATGCCGGCGCCCTAACTCCCGCTAATTTCACTTTCATCCATTTATTTTTCGCTTCT 6488 Query 5610 TTCGCCGGCTTT 5621 |||||| ||||| Sbjct 6487 TTCGCCAGCTTT 6476 >seq234044 Length=1176 Score = 78.8 bits (86), Expect = 4e-11 Identities = 114/157 (73%), Gaps = 3/157 (2%) Strand=Plus/Plus Query 5513 CGCGGCGGGTGTGGTGGTTACGC-GCAGCGTGACCGCTACACTTGCCAGCGCCCTAGCGC 5571 ||||| || |||| |||||| | || | | |||||| ||||| |||| |||| ||| Sbjct 918 CGCGGAGGAGGTGGGGGTTACTCAGCGGGCAGCCCGCTAAACTTGGCAGCAACCTAACGC 977 Query 5572 CCGCTCCT-TTCGCTTTCTTCCCTTCCTTTCTCGCCACGTTCGCCGGCTTTCCCCGTCAA 5630 ||| |||| |||| |||| |||| |||||| | || |||| ||||||| |||| Sbjct 978 CCGGTCCTGTTCGTTTTCATCCCAAAGGTTCTCGA-AGTTTTGCCGCCTTTCCCGGTCAG 1036 Query 5631 GCTCTAAATCGGGGGCTCCCTTTAGGGTTCCGATTTA 5667 | ||| | | | ||||||||||||| || ||||| Sbjct 1037 GGTCTTTAACCAGTGCTCCCTTTAGGGCTCTTATTTA 1073 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 20332026808708