Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tursiops_20truncatus_20[genbank_20GCA_5F000151865.3_202012-01-02] 240,557 sequences; 2,551,401,796 total letters Query= NC_004828.1 Length=4694 Score E Sequences producing significant alignments: (Bits) Value seq135 205 3e-49 >seq135 Length=518716 Score = 205 bits (226), Expect = 3e-49 Identities = 249/338 (74%), Gaps = 1/338 (0%) Strand=Plus/Minus Query 1244 GACATGCGACCACCGGCAAGACCAACATCGCGGAGGCTATTGCCCATGCTGTGCCGTTCT 1303 ||| |||||||||| ||||||| | ||||| |||||| ||||||| ||||||||| || | Sbjct 127797 GACCTGCGACCACCAGCAAGACAAGCATCGTGGAGGCCATTGCCCGTGCTGTGCCATTTT 127738 Query 1304 ATGGATGCGTTAACTGGACCAACGAGAACTTTCCGTTCAACGACTGCGTCGAAAAAATGA 1363 |||| || | |||||||| || | ||||||||| ||||| ||||| || || || ||| Sbjct 127737 ATGGCTGTGGAAACTGGACTAATGGGAACTTTCCTTTCAATGACTGGGTAGATAAGATGG 127678 Query 1364 TTATCTGGTGGGAGGAGGGCAAAATGACCGCCAAAGTGGTGGAAACAGCCAAGGCGATTC 1423 | || ||||||||||| || || |||||| ||| | || || | || || || ||| Sbjct 127677 TGATTTGGTGGGAGGAAGGAAAGATGACCAGTAAAATTGTAGAGTCTGCTAAAGCCATTT 127618 Query 1424 TGGGAGGATCTCGGGTG-AGAGTGGACCAAAAATGCAAAGCTTCGGTTCCGATCGAACCG 1482 |||| || || || | || || |||||||| |||| ||| || | || ||||| Sbjct 127617 TGGGTGGGTCGGCCATGCGGGGTTGATCAAAAATGTAAAGGTTCTGTGCAAATTGAACCA 127558 Query 1483 ACGCCGGTCATTATTACCAGTAACACCAACATGTGTTATGTCATCGACGGGAACACGACC 1542 ||||| || ||||||||||||| | | | | || ||| | || ||||||| || Sbjct 127557 ACGCCTGTACTTATTACCAGTAATATATATACGGGTACTGTGGTTGATGGGAACAGCACT 127498 Query 1543 ACGTTCGAGCATAAGCAGCCGTTGGAGGACAGGATGTT 1580 || | || |||||| | || |||||||| || ||||| Sbjct 127497 ACCCTGGAACATAAGGAACCTTTGGAGGAAAGAATGTT 127460 Score = 118 bits (130), Expect = 3e-23 Identities = 308/468 (66%), Gaps = 10/468 (2%) Strand=Plus/Minus Query 2937 TCCTCCGGAAATTGGCATTGCGATTCCCAATGGCTGGAAAACGGAGTCGTCACTCGAACC 2996 ||||| |||||||||||| | ||||| ||||| | | || ||| |||||| || Sbjct 126290 TCCTCAGGAAATTGGCAT-GTGATTCTCAATGACAAGGGAATCTCGTCACCACTCGTTCC 126232 Query 2997 ACCCGAACCTGGGTCTTGCCCAGCTACAACAACCACCTGTACAAACGAATCCAAGGACCC 3056 || |||| ||||| || ||| ||| ||||| | || ||||| | || |||| || Sbjct 126231 ACGAGAACTTGGGTGTTCCCCTTCTATGACAACAATCTCTACAAGCAGATTAAAGG--CC 126174 Query 3057 AGCGGAGGCNNNNNNNNNNNNNNATTCTTTGGATTCAGCACCCCCTGGGGATACTTTGAC 3116 | | | | ||| || | ||||||||| |||| ||| | ||| Sbjct 126173 AT----GCCTCTGACATGTCCGCCTACTTGGGTTACAGCACCCC-TGGGCCTACCTCGAC 126119 Query 3117 TACAATCGATTCCACTGCCACTTTTCCCCGCGAGACTGGCAACGACTCATCAACAACAAC 3176 | ||| ||||||| ||||||| || | |||||| || ||||||||||||||| || Sbjct 126118 TTCAACAGATTCCAGTGCCACTGGAGTCCCCAAGACTGTCAGCGACTCATCAACAACTAC 126059 Query 3177 TGGGGCATCCGTCCCAAAGCGATGCGCTTTAGACTCTTTAACATCCAGGTTAAAGAGGTC 3236 ||||||||||| || || || | | | | | || ||||| || ||||| |||||| Sbjct 126058 TGGGGCATCCGACCAAAGGCTCGTAGAATCAAAATTTTCAACATACAAGTTAAGGAGGTC 125999 Query 3237 ACGGTCCAAGACTTCAACACCACCATCGGCAACAACCTCACCAGTACGGTCCAGGTCTTT 3296 | || || || | || || | ||| ||||| || || ||||| | ||| Sbjct 125998 ATGGAGGCAGCAGGCACAAAGACAATTGCCAATAACCTAACGTCAACCATCCAGATTTTT 125939 Query 3297 GCGGACAAGGACTACCAACTGCCGTACGTCCTCGGATCGGCTACCGAAGGCACCTT-CCC 3355 || || | ||||| ||||| ||||| | ||| || ||||| || ||| ||| Sbjct 125938 GCAGATGACACATACCAGCTGCCATACGTGGTTGGAAATGCCACCGAGGGGTGCTTGCCC 125879 Query 3356 GCCGTTCCCAGCGGATATCTACACGATCCCGCAGTACGGGTACTGCAC 3403 || ||||| | ||| | | | | || |||||| |||||||||| Sbjct 125878 GCTTTTCCC-GGTGATGTTTTTATGTGGCCTCAGTACTGGTACTGCAC 125832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14869573572795