Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tursiops_20truncatus_20[genbank_20GCA_5F000151865.3_202012-01-02] 240,557 sequences; 2,551,401,796 total letters Query= NC_005889.1 Length=4693 Score E Sequences producing significant alignments: (Bits) Value seq135 156 1e-34 >seq135 Length=518716 Score = 156 bits (172), Expect = 1e-34 Identities = 244/354 (69%), Gaps = 1/354 (0%) Strand=Plus/Minus Query 1341 CCGTCTGGCTGTATGGACCCGCGACCACCGGAAAGACCAACATCGCGGAAGCCATCTCTC 1400 || ||||| | || |||| ||||||||| | ||||| | ||||| ||| ||||| | | Sbjct 127812 CCATCTGGTTCTACAGACCTGCGACCACCAGCAAGACAAGCATCGTGGAGGCCATTGCCC 127753 Query 1401 ACACCGTGCCCTTTTATGGCTGTGTGAACTGGACTAATGAGAACTTNNNNNNNNNNNNNN 1460 | ||||| ||||||||||||| ||||||||||||| |||||| Sbjct 127752 GTGCTGTGCCATTTTATGGCTGTGGAAACTGGACTAATGGGAACTTTCCTTTCAATGACT 127693 Query 1461 NNNNNGAAAAAATGTTGATCTGGTGGGAGGAGGGAAAGATGACCAGCAAGGTGGTGGAAC 1520 || || ||| |||| ||||||||||| |||||||||||||| || | || || Sbjct 127692 GGGTAGATAAGATGGTGATTTGGTGGGAGGAAGGAAAGATGACCAGTAAAATTGTAGAGT 127633 Query 1521 CCGCCAAGGCCATCTTgggggggTCTAGAGTAC-GAGTGGATCAAAAATGTAAATCCTCT 1579 | || || ||||| ||||| ||||| | | | || ||||||||||||||| ||| Sbjct 127632 CTGCTAAAGCCATTTTGGGTGGGTCGGCCATGCGGGGTTGATCAAAAATGTAAAGGTTCT 127573 Query 1580 GTACAAGTAGACTCTACCCCGGTGATTATCACCTCCAATACTAACATGTGTGTGGTGGTG 1639 || ||| | || | || || || |||| ||| |||| | | | || ||||| Sbjct 127572 GTGCAAATTGAACCAACGCCTGTACTTATTACCAGTAATATATATACGGGTACTGTGGTT 127513 Query 1640 GATGGGAACTCCACGACCTTTGAACACCAGCAGCCGCTGGAAGACCGCATGTTC 1693 ||||||||| ||| ||| | ||||| || | || |||| || | |||||| Sbjct 127512 GATGGGAACAGCACTACCCTGGAACATAAGGAACCTTTGGAGGAAAGAATGTTC 127459 Score = 120 bits (132), Expect = 9e-24 Identities = 219/310 (71%), Gaps = 12/310 (4%) Strand=Plus/Minus Query 3025 CCCCTGGGGATACTTTGACTTTAACCGCTTCCACTGCCACTTC--TCGCCAAGAGACTGG 3082 |||||||| ||| | ||||| ||| | ||||| ||||||| || |||||| ||| Sbjct 126137 CCCCTGGGCCTACCTCGACTTCAACAGATTCCAGTGCCACTGGAGTCCCCAAGA--CTGT 126080 Query 3083 CAAAGGCTCATCAACAACCACTGGGGACTGCGCCCCAAAAGCATGCA-AGTCCGCATCTT 3141 || | |||||||||||| ||||||| | || ||||| || | | | || || || Sbjct 126079 CAGCGACTCATCAACAACTACTGGGGCATCCG-ACCAAAGGCTCGTAGAATCAAAATTTT 126021 Query 3142 CAACATCCAAGTTAAGGAGGTCACGACGTCTAACGGGGA-GACGACCGTATCCAACAACC 3200 |||||| |||||||||||||||| | | | | | || | | ||| | |||| |||| Sbjct 126020 CAACATACAAGTTAAGGAGGTCATGGAGGC-AGCAGGCACAAAGACAATTGCCAATAACC 125962 Query 3201 TCACCAGCACGGTCCAGATCTTTGCGGACAGCACGTACGAGCTCCCGTACGT-GATGGAT 3259 | || || ||||||| ||||| || ||| ||| |||| || ||||| | |||| Sbjct 125961 TAACGTCAACCATCCAGATTTTTGCAGATGACACATACCAGCTGCCATACGTGGTTGGA- 125903 Query 3260 GCAGGTCA-GGAGGGCAGCTTGCCTCCTTTCCCCAACGACGTGTTCATGGTGCCTCAGTA 3318 | | || ||||| ||||||| |||| ||| || || || ||| ||||||||| Sbjct 125902 -AATGCCACCGAGGGGTGCTTGCCCGCTTTTCCCGGTGATGTTTTTATGTGGCCTCAGTA 125844 Query 3319 CGGGTACTGC 3328 | |||||||| Sbjct 125843 CTGGTACTGC 125834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14866381992290