Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tursiops_20truncatus_20[genbank_20GCA_5F000151865.3_202012-01-02] 240,557 sequences; 2,551,401,796 total letters Query= NC_006261.1 Length=4393 Score E Sequences producing significant alignments: (Bits) Value seq135 168 2e-38 >seq135 Length=518716 Score = 168 bits (186), Expect = 2e-38 Identities = 230/320 (72%), Gaps = 1/320 (0%) Strand=Plus/Minus Query 2941 CCTACTTCGGCTACAGCACCCCCTGGGGGTATTTTGACTTTAACAGATTCCACTGCCACT 3000 ||||||| || ||||||||||| |||| || | ||||| ||||||||||| ||||||| Sbjct 126155 CCTACTTGGGTTACAGCACCCC-TGGGCCTACCTCGACTTCAACAGATTCCAGTGCCACT 126097 Query 3001 TTTCACCACGTGACTGGCAGCGACTCATCAACAACAACTGGGGATTCCGGCCCAAGAGAC 3060 || | ||||| |||||||||||||||||| ||||||| |||| || ||| | Sbjct 126096 GGAGTCCCCAAGACTGTCAGCGACTCATCAACAACTACTGGGGCATCCGACCAAAGGCTC 126037 Query 3061 TCAGCTTCAAGCTCTTCAACATCCAGGTCAAGGAGGTCACGCAGAATGAAGGCACCAAGA 3120 || |||| | |||||||| || || |||||||||| | || | |||||| |||| Sbjct 126036 GTAGAATCAAAATTTTCAACATACAAGTTAAGGAGGTCATGGAGGCAGCAGGCACAAAGA 125977 Query 3121 CCATCGCCAATAACCTCACCAGCACCATCCAGGTGTTTACGGACTCGGAGTACCAGCTGC 3180 | || ||||||||||| || ||||||||| | ||| | || |||||||||| Sbjct 125976 CAATTGCCAATAACCTAACGTCAACCATCCAGATTTTTGCAGATGACACATACCAGCTGC 125917 Query 3181 CGTACGTTCTCGGCTCTGCCCACCAGGGCTGCCTGCCTCCGTTCCCGGCGGACGTGTTCA 3240 | ||||| | || |||| | |||| ||| |||| | || || | || || || | Sbjct 125916 CATACGTGGTTGGAAATGCCACCGAGGGGTGCTTGCCCGCTTTTCCCGGTGATGTTTTTA 125857 Query 3241 TGATTCCCCAGTACGGCTAC 3260 || || |||||| | ||| Sbjct 125856 TGTGGCCTCAGTACTGGTAC 125837 Score = 154 bits (170), Expect = 4e-34 Identities = 248/354 (70%), Gaps = 3/354 (1%) Strand=Plus/Minus Query 1218 CCATCTGGCTGTTTGGACCCGCCACCACCGGCAAGACCAACATTGCGGAAGCCATCGCCC 1277 |||||||| | | |||| || |||||| ||||||| | ||| | ||| ||||| |||| Sbjct 127812 CCATCTGGTTCTACAGACCTGCGACCACCAGCAAGACAAGCATCGTGGAGGCCATTGCCC 127753 Query 1278 ACGCCGTGCCCTTCTACGGCTGCGTCAACTGGACCAATGAGAACTTTCCCTTCAATGATT 1337 || ||||| || || ||||| | |||||||| |||| ||||||||| |||||||| | Sbjct 127752 GTGCTGTGCCATTTTATGGCTGTGGAAACTGGACTAATGGGAACTTTCCTTTCAATGACT 127693 Query 1338 GCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGCAAGATGACGGCCAAGGTCGTGGAGT 1397 | || || ||||||||||| ||||||||||| || |||||||| || | || |||| Sbjct 127692 GGGTAGATAAGATGGTGATTTGGTGGGAGGAAGGAAAGATGACCAGTAAAATTGTAGAGT 127633 Query 1398 CCGCCAAGGCCATTCTCGGCGG--CAGCAAGGTGCGCGTGGACCAAAAGTGCAAGTCGTC 1455 | || || |||||| | || || | || | | | | || || ||||| || || || Sbjct 127632 CTGCTAAAGCCATTTTGGGTGGGTCGGCCATGCG-GGGTTGATCAAAAATGTAAAGGTTC 127574 Query 1456 CGCCCAGATCGACCCCACCCCCGTGATCGTCACCTCCAACACCAACATGTGCGCCGTGAT 1515 | || || || || || || || | | ||| || | | | | | | ||| | Sbjct 127573 TGTGCAAATTGAACCAACGCCTGTACTTATTACCAGTAATATATATACGGGTACTGTGGT 127514 Query 1516 TGACGGGAACAGCACCACCTTCGAGCACCAGCAGCCTCTCCAGGACCGGATGTT 1569 ||| ||||||||||| ||| | || || || | ||| | |||| | ||||| Sbjct 127513 TGATGGGAACAGCACTACCCTGGAACATAAGGAACCTTTGGAGGAAAGAATGTT 127460 Score = 89.7 bits (98), Expect = 1e-14 Identities = 183/271 (68%), Gaps = 6/271 (2%) Strand=Plus/Minus Query 3957 GACGTGTACCTGCAGGGTCCCATCTGGGCCAAGATTCCTCACACGGACGGCAACTTCCAC 4016 ||| | || || ||||| || || ||||| || |||| |||| || ||||| || || Sbjct 124940 GACATCTATCTCCAGGGCCCTATTTGGGCGAAAGCTCCTGACACTGATGGCAATTTTCAG 124881 Query 4017 CCGTCTCCGCTGATGGGCGGCTTTGGCCTGAAACATCCTCCGCCTCAGATCCTGATCAAG 4076 || ||| ||||| |||| ||| |||||||| || || ||| ||| || Sbjct 124880 CCTCATCCTAACATGGGAGGCTCTGGGTGCAAACATCCACCTCCGATGATTCTGCAGAAA 124821 Query 4077 AACACGCCTGTACCTGCGGATCCTCCGACCACCTTCAACCAGTCAAAGC---TGAACTCT 4133 || || || || ||||| || ||||| | |||||| | || || | || ||| Sbjct 124820 AATACTCCAGTCCCTGCAGAACCTCCTGCGGCCTTCACTGA---AACGCCTATTAAGTCT 124764 Query 4134 TTCATCACGCAATACAGCACCGGACAGGTCAGCGTGGAAATTGAATGGGAGCTGCAGAAG 4193 || || | || || ||| || ||||| | ||||||||||| ||||||| | Sbjct 124763 TTTATTAGTCAGTATTCCACTGGTCAGGTAACAGTGGAAATTGATTGGGAGCAAAAATCA 124704 Query 4194 GAAAACAGCAAGCGCTGGAACCCCGAGATCC 4224 ||| |||||| |||||||| || ||||||| Sbjct 124703 GAATCCAGCAAACGCTGGAATCCAGAGATCC 124673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 13908907840790