Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= NC_001510.1 Length=5149 Score E Sequences producing significant alignments: (Bits) Value seq6 224 3e-55 seq8 161 3e-36 seq3 159 1e-35 seq2 116 1e-22 >seq6 Length=292091736 Score = 224 bits (248), Expect = 3e-55 Identities = 278/377 (74%), Gaps = 4/377 (1%) Strand=Plus/Plus Query 1414 TAAACAGACAAGGAGGCAAAAGAAATACTGTTTTATTTCATGGACCAGCCAGCACAGGCA 1473 |||| | |||| ||| |||||||| | | | | || ||||||| |||||||| | Sbjct 113562724 TAAATAAACAACTAGGAAAAAGAAACGCAATCCTTCTACAAGGACCAGTAAGCACAGGAA 113562783 Query 1474 AA--TCTATTATTGCACAAGCCATAGCACAAGCAGTTGGCAATGTTGGTTGCTATAATGC 1531 || |||| || ||||| | | || ||||| |||||| ||||||| || | Sbjct 113562784 AAATTCTAATAACACACAAAAAAATGTG-AATTTGTTGGTAATGTTAGTTGCTACAACCC 113562842 Query 1532 AGCCAATGTAAACTTTCCATTTAATGACTGTACCAACAAGAACTTGATTTGGGTAGAAGA 1591 ||| ||||||||||||||||||||||| ||| |||||| || | || | | ||||||| Sbjct 113562843 AGCAAATGTAAACTTTCCATTTAATGATTGTTGCAACAAAAATATTATATAGATAGAAGA 113562902 Query 1592 AGCTGGTAACTTTGGACAGCAAGTAAACCAGTTTAAAGCCATTTGCTCTGGTCAAACTAT 1651 |||| ||||||| || |||||||||||||| ||||| || ||| || || |||| ||| Sbjct 113562903 AGCTTGTAACTTGGGTCAGCAAGTAAACCAATTTAAGGCAATTATGTCAGGACAAAGTAT 113562962 Query 1652 TCGCATTGATC-AAAAAGGAAAAGGCAGCAAACAGATTGAACCAACACCAGTCATCATGA 1710 | | |||| ||||||||||||| |||||| || ||||| || ||||| || |||| Sbjct 113562963 CAGATTAGATCAAAAAAGGAAAAGGAAGCAAAGCAATAGAACCTACTCCAGTAATTATGA 113563022 Query 1711 CCACAAATGAGAACATTACAGTGGTCAGAATAGGCTGCGAAGAAAGACCAGAACACACTC 1770 || |||||||| ||| ||| || ||||| ||||| ||| |||||||||||| || Sbjct 113563023 CCTCAAATGAGGGCATAACAAATGTAAGAATTGGCTGTGAACTCAGACCAGAACACTCTG 113563082 Query 1771 AACCAATCAGAGACAGA 1787 | | || | | ||||| Sbjct 113563083 AGTCTATTAAACACAGA 113563099 Score = 176 bits (194), Expect = 1e-40 Identities = 297/428 (69%), Gaps = 9/428 (2%) Strand=Plus/Plus Query 1427 AGGCAAAAGAAATACTGTTTTATTTCATGGACCAGCCAGCACAGGCAAATCTATTATTGC 1486 ||| |||||||| || | |||| || || ||||| ||||||| |||| | || || Sbjct 48168160 AGGAAAAAGAAACACAATACTATTACAAGGGCCAGCAAGCACAGTCAAAAGCCTAATAGC 48168219 Query 1487 ACAAGCCATAGCACAAGCAGTTGGCAATGTTGGTTGCTATAATGCAGCCAATGTAAACTT 1546 |||| || | | |||||| || ||| |||||||| |||| ||||| || || Sbjct 48168220 ACAAAAAATGTGA--ATTAGTTGGTAACATTGTATGCTATAACCCAGCAAATGTTAATTT 48168277 Query 1547 TCCATTTAATGACTGTACCAACAAGAACTTGATTTGGGTAGAAGAAGCTGGTAACTTTGG 1606 |||||||||||| || ||||| || | |||||| |||||| || | ||||| | Sbjct 48168278 TCCATTTAATGATTGCTGTAACAAAAATATAATTTGGATAGAAGCAG---GAAACTTGGC 48168334 Query 1607 ACAGCAAGTAAACCAGTTTAAAGCCATTTGCTCTGGTCAAACTATTCGCATTGATCAAAA 1666 ||| ||||||| || |||||||| || || || ||| | || | | ||||||| Sbjct 48168335 ACAAGAAGTAAATCAATTTAAAGCAATCATGTCAGGACAATCAATCAGACTAAATCAAAA 48168394 Query 1667 AGGAAAAGGCAGCAAACAGATTGAACCAACACCAGTCATCATGACCACAAATGAGAACAT 1726 ||||||||| |||||| || |||||||| ||||| || ||||| | ||||| | || Sbjct 48168395 AGGAAAAGGAAGCAAATCAATCGAACCAACTCCAGTAATAATGACATCCAATGAAGATAT 48168454 Query 1727 TACAGTGGTCAGAATAGGCTGCGAAGAAAGACCAGAACACACTCAAC----CAATCAGAG 1782 ||| | || |||||||| || ||| | ||| |||||||| ||| |||| | | Sbjct 48168455 AACAATAGTAAGAATAGGATGTGAAATTAAACCTGAACACACAGAACAGAACAATTAAAC 48168514 Query 1783 ACAGAATGCTTAACATTCATCTAACACATACCTTGCCTGGTGACTTTGGTTTGGTTGACA 1842 ||||| | ||||| || ||| || ||| |||| |||||||| |||| | Sbjct 48168515 ACAGATGTATCAACATAAGACTGACAAATGTCTTAAATGGTAGATTTGGTTTAATTGAAA 48168574 Query 1843 AAAATGAA 1850 | || ||| Sbjct 48168575 ATAAAGAA 48168582 Score = 93.3 bits (102), Expect = 1e-15 Identities = 145/200 (73%), Gaps = 12/200 (6%) Strand=Plus/Plus Query 2410 CCTGGCTACAAGTACCTGGGACCAGGGAACAGCCTTGACCAAGGAGAACCAACCAATCCA 2469 ||||| ||||| || || |||| || ||||| |||||||||||||||||||| || ||| Sbjct 48169087 CCTGGATACAAATATCTTGGACTGGGTAACAGTCTTGACCAAGGAGAACCAACAAACCCA 48169146 Query 2470 TCTGACGCCGCTGCCAAAGAGCACGACGAGGCCTATGATC-AATACATCAAATCTGGAAA 2528 ||| ||||||||||| ||||| || |||| ||| | || | ||||||| | Sbjct 48169147 AATGATAAAGCTGCCAAAGAACACGATGAACACTATCATCTTCTGCAAC-AATCTGGTTA 48169205 Query 2529 AAATCCTTACCTGTACTTCTCTGCTGCTGA---TCAACGCTTTATTGACCAAAC-CA-AG 2583 || ||| || | |||||| ||||| | || ||||| || |||| || | Sbjct 48169206 TAACCCTCACTTCTACTTCAACAAAGCTGACACTAAA---TTTAT--ACAAAACACAGAA 48169260 Query 2584 GACGCCAAAGACTGGGGAGG 2603 ||||||||||||||||||| Sbjct 48169261 AACGCCAAAGACTGGGGAGG 48169280 >seq8 Length=312544902 Score = 161 bits (178), Expect = 3e-36 Identities = 264/376 (70%), Gaps = 7/376 (2%) Strand=Plus/Plus Query 1413 TTAAACAGACAAGGAGGCAAAAGAAATACTGTTTTATTTCATGGACCAGCCAGCACAGGC 1472 ||||||| |||| | || |||||||| || | ||||| | |||||| | |||||||| Sbjct 230387620 TTAAACAAACAATGTGGAAAAAGAAACACAATCTTATTGTAAGGACCAACTAGCACAGGA 230387679 Query 1473 AAATCTATTATTGCACAAGCCATAGCACAAGCAG-TTGGCAATGTTGGTTGCTATAATGC 1531 ||| | || ||| | ||| |||| | |||| || ||| ||||| ||| | Sbjct 230387680 AAAGGCTTAATAGCATAGAATATATT-CAAGTTGGTTGGTAACACTGGCTGCTACAATCC 230387738 Query 1532 AGCCAATGTAAACTTTCCATTTAATGACTGTACCAACAAGAACTTGATTTGGGTAGAAGA 1591 ||| |||||||||||||| ||||||||| | || || ||| | || ||| ||||||| Sbjct 230387739 AGCAAATGTAAACTTTCCTTTTAATGACAGATGCAGGAAAAACATAATATGGATAGAAGA 230387798 Query 1592 AGCTGGTAACTTTGGACAGCAAGTAAACCAGTTTAAAGCCATTTGCTCTGGTCAAACTAT 1651 |||||| | |||| ||||||||| | || ||||| || || || ||||| || Sbjct 230387799 ----GGTAACCTATGACAACAAGTAAACTAATTCAAAGCAATAATGTCAGGACAAAC-AT 230387853 Query 1652 TCGCATTGATCAAAAAGGAAAAGGCAGCAAACAGATTGAACCAACACCAGTCATCATGAC 1711 | | | || ||||||||||| || || ||| ||| |||| | || || || |||| Sbjct 230387854 TAGACTAGACCAAAAAGGAAATGGAAGTAAAAGTATTTAACCTCCTCCTGTAATAATGAT 230387913 Query 1712 CACAAATGAGAACATTACAGTGGTCAGAATAGGCTGCGAAGAAAGACCAGAACACACTCA 1771 || ||||| |||||| | | | ||| || || || ||||||||||||| | | Sbjct 230387914 CAGCAATGAAGACATTATTATAATTAAAATTGGATGTGACATTAGACCAGAACACAGTGA 230387973 Query 1772 ACCAATCAGAGACAGA 1787 |||||| | | ||||| Sbjct 230387974 ACCAATTAAACACAGA 230387989 >seq3 Length=527952102 Score = 159 bits (176), Expect = 1e-35 Identities = 304/443 (69%), Gaps = 6/443 (1%) Strand=Plus/Minus Query 1413 TTAAACAGACAAGGAGGCAAAAGAAATACTGTTTTATTTCATGGACCAGCCAGCACAGGC 1472 ||||| |||| ||| ||||||||| | | || | || ||| |||| |||||||| Sbjct 352566196 TTAAATGAACAATTAGGTAAAAGAAATGCAATACTACTACAAGGATCAGCTAGCACAGGA 352566137 Query 1473 AAATCTATTATTGCACA-AGCCATAGCACAAGCAGTTGGCAATGTTGGTTGCTATAATGC 1531 ||| | | || ||||| | | | || ||| || ||||||||||| | | | Sbjct 352566136 AAAAGTCTAATAGCACACAAAAAAATGTGAATTAGTGGGTTATGTTGGTTGCGACATCCC 352566077 Query 1532 AGCCAATGTAAACTTTCCATTTAATGACTGTACCAACAAGAACTTGATTTGGGTAGAAGA 1591 | | ||||||| ||||||||||||||||| | || || || | || ||| ||||||| Sbjct 352566076 AACAAATGTAAGCTTTCCATTTAATGACTATTGCAGTAAAAATATAATATGGATAGAAGA 352566017 Query 1592 AGCTGGTAACTTTGGACAGCAAGTAAACCAGTTTAAAGCCATTTGCTCTGGTCAA---AC 1648 ||| || ||| | || || ||||||| | |||||| | | | ||||| ||| | Sbjct 352566016 AGCAGGAAACCTAGGCCAAGAAGTAAATAAATTTAAAACAACTATGTCTGGACAAAGCAT 352565957 Query 1649 TATTCGCATTGATCAAAAAGGAAAAGGCAGCAAACAGATTGAACCAACACCAGTCATCAT 1708 |||| | | || ||||||| |||||| || ||| || || |||| ||||| | || Sbjct 352565956 TATTAGACTAGACCAAAAAGTAAAAGGAAGTAAATCTATAAAATCAACTCCAGTTGTAAT 352565897 Query 1709 GACCACAAATGAGAACATTACAGTGGTCAGAATAGGCTGCGAAGAAAGACCAGAACACAC 1768 ||| ||||||| | |||||| |||| ||| || | ||| |||||||||||| | Sbjct 352565896 GACATCAAATGAAGATATTACAAATGTCACAATTGGTTATGAATTAAGACCAGAACATTC 352565837 Query 1769 TCAACCAATCAGAGACAGAATGCTTAACAT-TCATCTAACACATACCTTGCCTGGTGACT 1827 | | | | | | ||||| ||||||| || |||||| ||| || |||| | | Sbjct 352565836 TGAGCTCCTAAAACACAGATGTGTTAACATAAGATTTAACAC-TACTTTAGGTGGTCAGT 352565778 Query 1828 TTGGTTTGGTTGACAAAAATGAA 1850 ||||| | ||||||| || ||| Sbjct 352565777 TTGGTATCATTGACAACAAAGAA 352565755 >seq2 Length=541556283 Score = 116 bits (128), Expect = 1e-22 Identities = 185/261 (71%), Gaps = 7/261 (3%) Strand=Plus/Minus Query 1527 AATGCAGCCAATGTAAACTTTCCATTTAATGACTGTACCAACAAGAACTTGATTTGGGTA 1586 ||| |||| ||| | || |||||| ||||||||||||||||||| ||| | || || || Sbjct 341710298 AATCCAGCTAATATGAA-TTTCCAATTAATGACTGTACCAACAACAACATTATG-GGTTA 341710241 Query 1587 GAAGAAGCTGGTAACTTTGGACAGCAAGTAAACCAGTTTAAAGCCATTTGCTCTGGTCAA 1646 ||| || |||| | |||||||| || | |||||| || ||| | || | ||||| Sbjct 341710240 GAAAAA-CTGGAAGTTTTGGACAACAGGCAAACCAATTCAAACAAACTTTGAGTTGTCAA 341710182 Query 1647 ACTATTCGCATTGATCAAAAAGGAAAAGGCAGCAAACAGATTGAACCAACACCAGTCATC 1706 | || | | |||||||||| ||||| | ||||| |||| | ||| ||||| || Sbjct 341710181 AAAATAAGGACTGATCAAAAAAGAAAATG----AAACAAATTGTATCAAATCCAGTAATA 341710126 Query 1707 ATGACCACAAATGAGAACATTACAGTGGTCAGAATAGGCTGCGAAGAAAGACCAGAACAC 1766 || || | |||| | | || | ||| |||| ||| || ||| |||||||| Sbjct 341710125 ATTACAAGCGATGAAGATTTAACTTAAGGAAGATTAGGTTGCAAATTGAGAACAGAACAC 341710066 Query 1767 ACTCAACCAATCAGAGACAGA 1787 ||||||||||| | || |||| Sbjct 341710065 ACTCAACCAATAAAAGGCAGA 341710045 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16363902186160